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Properties
| Property Name | Value |
|---|
| Product | Zinc finger, RING-type |
| Orig transcript id | gnl|cribi|Naga_100010g14.6201.mrna |
| Orig protein id | gnl|cribi|Naga_100010g14.6201 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002461.1 | supercontig | CM002461.1:466729..470129 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna3461 ID=rna3461|Name=rna3461|organism=Nannochloropsis gaditana|type=mRNA|length=684bp
TTTACAGGCATCAGTGCTTCTTCCAGGTCGTTTTCACCATTGGATCTCGG
CCTTTGAGTCGTGCTCAAGCTGCTAGGAACGTTGCAGTGAATCGCCTGCT
CTTCCACTGTTGCTTACGAAAAGCACGACCGAAAGACGTGTGAAAAGGCC
GCCCTGAAGAACGCATACCTGATTTCTCTATCATGAGGGGCACCTACATG
GATCCCGAGACCAACATCCGATACGACACGAATAATGCGGATTTCGAAGG
ATGGTTGACCAAGCAAAGCAGCTGGCTAAAGGAATGGAGAAGACGTTACT
TCATTTTGAAAGGCAGCAAGCTATTTTTTGCCAAGAATGAAATGTGCTCC
CCGCACGGCATGATAGACCTGTCGTCGTGCATGACAGTCAAGTCGGCGGA
GCTTAAGGCTCAGAAGCGGAATGCTCTGGAGGTCTCCACGCCCGAGACGA
CCTTTTTGATGTACGCGGACACGGAGAAAGAGAAGGACGACTGGATCGGG
GCGGTGGGTCGGGCAATCGTGCGAAGCTCCACCACCTACACGCAGGAGGT
GGGGGAGGCGGGGGACGAGGATGACGACGGGAGTGACTACGAGGATTAAG
GTGAAGTCTTGTACAGGCGAGAGGGGGGGCTTGCGCCACGGTAGAGCGAA
GTGAAAGAAACAAAAGGCGGTTGCCACGTTTGCG back to topprotein sequence of rna3461 >rna3461-protein ID=rna3461-protein|Name=rna3461|organism=Nannochloropsis gaditana|type=polypeptide|length=737bp
MQAGGSDGLPGVAGRFGGSAEETRRRPATKTGAQVPGGMRLHHTEGRVDV
QLFMNPVAGLTDLSLVHGYFKLLDGPFSSERDVFAVLKGVYLRRDGRLLL
RTVSQKQAGTLGFAYTLPASSAKTFRAQGSDSDKPAGRATRTLGEPSQRL
GGGEGVEGNPGDASDQASPSHMAANADTGLERRIAGVWGDVASYPDVEMR
LDAVLREVAASAGTDLEDRAAGREAEEADVFFGMQLQADKKLDMDGADES
EGAEVVGLTVLKGGALLAGMEEKAAPDGGLLETVLIPDRTKERYFRHQTS
NGRRCVFTLDARSSPRLNASQVMGQTGAQGDASSSSSTAAAESQARLELA
DGFEGTLTSPECDVALSVSSQAIRLDWTQAYRKAVNYSIIVTLVCVLQIA
LLFRQLYFSRTQAAASRVSLLCIGQQAILDALLCIAHLLLCAVLQPLFAA
FASIAFFKLVIFSIFEIRYMFIIHQSRDSQSAAATSFNGLRRQLAALHAR
FYAVLFLLLFLVYFLAQYLEVLVFVLYSFWVPQIVMNASKGLRRPLNRTY
VLGMSLARLAIPLYVYGCPENFIHLIFSGYRPDYRLCFALVVWVGAQVAV
LLSQDYLGPQYMIPARFLPPKYNYYRPVPQGRGGRAQGPQPTVRAGGLVH
TQSSGSSGGCEEIELMDLEEGPGHGGEADGEEGGALECAICFNDVDVTRL
GSYMVAPCNHVFDRECLERWMDIKLECPVCRCSLPHR back to topmRNA from alignment at CM002461.1:466729..470129+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna3461 ID=rna3461|Name=rna3461|organism=Nannochloropsis gaditana|type=mRNA|length=3401bp|location=Sequence derived from alignment at CM002461.1:466729..470129+ (Nannochloropsis gaditana)
CTCACGCTAGTTCACAGCATGAGACCGCTGCTGCCGGGGTTGCCATGATC
ACGGGGACTAAGGTTTTGTGTGCGCCTGAGTTCAAGCACTGCTGTCGCAT
TACCCTGCAGATACAGTCCACACCCTTATGGATGACATTTCTATCATAAT
GTTCCCCTCCAGGCGTCTTTCGGGCAAATCTCGTCTCACCCGTACTCACG
CACGGGTCTTGCGCCGATGCATCTGGGAGGAACGAAAGCATCAGCTTAGT
GGAGCATAGgaatcagcagcagcatgctGACACCAGAGCGTGAAGACaca
ccgtctcctcccctcgcccagaGGGTTCGAGCAAGGACACGAAGGTAGAC
CGCCTTCTTGACACTCGATTTTTTACATTGCATGTCCCGTCTTTGCCCCT
CCGAAACCATCACAGTTCTCAACATGTCAAATAAAAGAGCTCTGCCTTTA
TTTTTCAGCGTGTTGGCTTACAACTTGTGTGTTAGAGATTCGAGGCAGGG
CATCTTGACGTCAAGTAAAGATAACTCCCGATCCCTCCTGTGCGTTACAT
AGCACGTTGCTTCCGCATACCATTCACACGCACGCTCTCCCAACGAACGA
CAGTTGGCTTGCTAGACAAgcgccgggcggggggggcatcatggacgagg
agcaagCGCGGAGACACCGGTCAAGAGTGTTTCAGATGGGCTTGTTCATG
TGCTTTCTGCTTTTATTCGCCGATCATCGCAATGGCAATGCAGGCTCTCC
TGCATACGTGGGGGACGCAGACAGCAAcggagaggcagaggactACCGAC
AGCAAGGGGTAGGCATGGGTGATTTCGgaaacgggggggggcggggggca
gggaggaggccacgtgggagggcgtggtccTTCCAGCCAGGGCGACGCAG
CGATTGAAAGAGTTCGTCCGGCttcaaggaaaaggatgttTCTACGCTGC
AAACACCACCGGCTACTACCGCGGGGCCTGGACAAAGCAGGTGGAACCGC
CTGTGGCTTTAGAGGCCAATCCCgggcgccgcctccgcctcatGCAGGCC
GGGGGGAGTGACGGGCTGCCGGGGGTGGCGGGCAGGTTCGGCGGCTCTGC
GGAGGAGACTCGCCGCAGGCCAGCCACCAAGACGGGGGCTCAGGTGCCAG
GGGGCATGCGGCTGCACCATACAGAGGGGCGCGTGGACGTGCAGCTTTTC
ATGAATCCCGTGGCAGGCCTGACCGACCTGAGTCTGGTGCATGGCTACTT
CAAGCTCCTGGAcgggcccttctcctccgagcGCGACGTGTTCGCAGTCC
TCAAGGGCGTGTACCTGCGCCGTGATGGCCGTCTCCTGCTCCGAACCGTC
TCGCAGAAGCAGGCAGGCACCCTGGGCTTCGCCTAcaccctcccggcctc
ctcggccaagacCTTCCGGGCCCAAGGCAGCGATAGCGACAAACCTGCAG
GGCGCGCGACCCGGACCCTAGGAGAGCCGAGCCAGCGTCtagggggcgga
gagggggtAGAGGGCAATCCCGGCGACGCGAGTGATCaggcctctccctc
gcacATGGCGGCAAACGCCGATACCGGCCTTGAGAGACGGATAGCAGGTG
TCTGGGGAGATGTAGcaagctacccggatgtggaGATGCGCCTGGATGCC
GTCTTGAGGGAGGTTGCAGCGAGCGCAGGTACTGACCTGGAGGATCGGGC
GGCAGggcgagaggcagaggaagcggacgtgTTTTTCGGAATGCAGTTAC
AGGCCGACAAGAAGCTGGATATGGATGGAGCTGATGAGAGTGAAGGGGCG
GAAGTGGTGGGGCTGACGGTGCTGAAAGGTGGGGCGCTGttggcggggat
ggaggagaaggcggctcCGGACGGCGGCTTGCTGGAGACAGTCCTGATCC
CAGACAGGACCAAAGAGAGATACTTCCGGCACCAGACGAGCAACGGGCGG
CGTTGCGTGTTCACCCTGGACGCGCGCTCCTCCCCGCGCCTGAACGCCAG
CCAGGTCATGGGCCAGACGGGGGCCCAGGgcgacgcctcctcctcctcct
ccactgccgcgGCGGAGAGCCAGGCGCGGCTTGAGTTGGCGGATGGCTTC
GAAGGGACGCTGACCAGTCCCGAGTGCGACGTGGCTCTGAGTGTGTCCTC
ACAGGCGATCCGCCTCGACTGGACTCAGGCCTATCGCAAGGCCGTCAACT
ACTCCATCATCGTCACCCTTGTCTGCGTCCTGCAAatcgctctcctcttc
cgccagcTCTATTTCTCGCGCACGCAAGCAGCGGCCTCTCGGGTCTCCCT
CTTGTGTATCGGCCAGCAAGCCATCCTAGACGCCCTCCTCTGcatcgccc
acctccttctgTGCGCTGTGCTTCAGcccctcttcgccgccttcgcctcc
atcgccttcttcaaGCTTGTCATCTTCTCCATCTTCGAGATCCGCTACAT
GTTCATCATCCACCAGTCACGCGATTCTCAgtccgccgctgccacctcct
tcaacgGCCTTCGCCGGCAGCTagccgccctccacgcccgttTCTACgcg
gtccttttcctcctcctcttcctcgtttaCTTCTTGGCGCAGTACTTGGa
ggtcctcgtcttcgtcctttACTCCTTCTGGGTTCCGCAGATCGTCATGA
ACGCCAGCAAAGGCCTCCGGCGTCCTCTCAATCGGACCTACGTGCTTGGC
ATGAGTCTGGCGCGCCTCGCCATCCCCCTCTACGTGTACGGCTGTCCGGA
GAACTTTATTCACCTCATTTTTTCGGGCTACAGGCCCGATTACCGGCTCT
GCTTCGCCCTGGTCGTCTGGGTGGGGGCGCAagtcgctgtcctcctctcg
caaGATTACCTTGGCCCGCAGTATATGATCCCAGCGCGCTTCCTACCGCC
CAAGTACAACTACTATCGCCCAGTGCcccagggaaggggggggagagcgc
aAGGTCCTCAACCCACAGTGCGAGCAGGAGGGTTGGTGCACACGCAAAGC
AGTGGGAGCAGTGGTGGCTGCGAGGAGATTGAGTTGATGGACCTGGAAGA
GGGACCGGGacacgggggggaagcggatggggaggagggcggggccctGG
AGTGCGCCATTTGCTTCAACGACGTGGATGTGACGCGCTTGGGGAGCTAC
ATGGTAGCGCCGTGCAATCACGTCTTCGACAGGGAGTGTCTGGAGCGCTG
GATGGACATCAAGTTGGAGTGTCCTGTCTGCCGgtgctcccttcctcatc
ggTGAAatggcgcggggagggggtcgGCTGTACATAGTCAATCAAAGATG
GGccggaaaaggggggggctggcctCTGTGTCGATGCGAAGACTTGCGAG
AGAGCAAATAGTGTTCTTGGCAAAGAAATGAACGGATACTTGTGCTTGCA
G back to topCoding sequence (CDS) from alignment at CM002461.1:466729..470129+ >rna3461 ID=rna3461|Name=rna3461|organism=Nannochloropsis gaditana|type=CDS|length=2214bp|location=Sequence derived from alignment at CM002461.1:466729..470129+ (Nannochloropsis gaditana)
atGCAGGCCGGGGGGAGTGACGGGCTGCCGGGGGTGGCGGGCAGGTTCGG
CGGCTCTGCGGAGGAGACTCGCCGCAGGCCAGCCACCAAGACGGGGGCTC
AGGTGCCAGGGGGCATGCGGCTGCACCATACAGAGGGGCGCGTGGACGTG
CAGCTTTTCATGAATCCCGTGGCAGGCCTGACCGACCTGAGTCTGGTGCA
TGGCTACTTCAAGCTCCTGGAcgggcccttctcctccgagcGCGACGTGT
TCGCAGTCCTCAAGGGCGTGTACCTGCGCCGTGATGGCCGTCTCCTGCTC
CGAACCGTCTCGCAGAAGCAGGCAGGCACCCTGGGCTTCGCCTAcaccct
cccggcctcctcggccaagacCTTCCGGGCCCAAGGCAGCGATAGCGACA
AACCTGCAGGGCGCGCGACCCGGACCCTAGGAGAGCCGAGCCAGCGTCta
gggggcggagagggggtAGAGGGCAATCCCGGCGACGCGAGTGATCaggc
ctctccctcgcacATGGCGGCAAACGCCGATACCGGCCTTGAGAGACGGA
TAGCAGGTGTCTGGGGAGATGTAGcaagctacccggatgtggaGATGCGC
CTGGATGCCGTCTTGAGGGAGGTTGCAGCGAGCGCAGGTACTGACCTGGA
GGATCGGGCGGCAGggcgagaggcagaggaagcggacgtgTTTTTCGGAA
TGCAGTTACAGGCCGACAAGAAGCTGGATATGGATGGAGCTGATGAGAGT
GAAGGGGCGGAAGTGGTGGGGCTGACGGTGCTGAAAGGTGGGGCGCTGtt
ggcggggatggaggagaaggcggctcCGGACGGCGGCTTGCTGGAGACAG
TCCTGATCCCAGACAGGACCAAAGAGAGATACTTCCGGCACCAGACGAGC
AACGGGCGGCGTTGCGTGTTCACCCTGGACGCGCGCTCCTCCCCGCGCCT
GAACGCCAGCCAGGTCATGGGCCAGACGGGGGCCCAGGgcgacgcctcct
cctcctcctccactgccgcgGCGGAGAGCCAGGCGCGGCTTGAGTTGGCG
GATGGCTTCGAAGGGACGCTGACCAGTCCCGAGTGCGACGTGGCTCTGAG
TGTGTCCTCACAGGCGATCCGCCTCGACTGGACTCAGGCCTATCGCAAGG
CCGTCAACTACTCCATCATCGTCACCCTTGTCTGCGTCCTGCAAatcgct
ctcctcttccgccagcTCTATTTCTCGCGCACGCAAGCAGCGGCCTCTCG
GGTCTCCCTCTTGTGTATCGGCCAGCAAGCCATCCTAGACGCCCTCCTCT
GcatcgcccacctccttctgTGCGCTGTGCTTCAGcccctcttcgccgcc
ttcgcctccatcgccttcttcaaGCTTGTCATCTTCTCCATCTTCGAGAT
CCGCTACATGTTCATCATCCACCAGTCACGCGATTCTCAgtccgccgctg
ccacctccttcaacgGCCTTCGCCGGCAGCTagccgccctccacgcccgt
tTCTACgcggtccttttcctcctcctcttcctcgtttaCTTCTTGGCGCA
GTACTTGGaggtcctcgtcttcgtcctttACTCCTTCTGGGTTCCGCAGA
TCGTCATGAACGCCAGCAAAGGCCTCCGGCGTCCTCTCAATCGGACCTAC
GTGCTTGGCATGAGTCTGGCGCGCCTCGCCATCCCCCTCTACGTGTACGG
CTGTCCGGAGAACTTTATTCACCTCATTTTTTCGGGCTACAGGCCCGATT
ACCGGCTCTGCTTCGCCCTGGTCGTCTGGGTGGGGGCGCAagtcgctgtc
ctcctctcgcaaGATTACCTTGGCCCGCAGTATATGATCCCAGCGCGCTT
CCTACCGCCCAAGTACAACTACTATCGCCCAGTGCcccagggaagggggg
ggagagcgcaAGGTCCTCAACCCACAGTGCGAGCAGGAGGGTTGGTGCAC
ACGCAAAGCAGTGGGAGCAGTGGTGGCTGCGAGGAGATTGAGTTGATGGA
CCTGGAAGAGGGACCGGGacacgggggggaagcggatggggaggagggcg
gggccctGGAGTGCGCCATTTGCTTCAACGACGTGGATGTGACGCGCTTG
GGGAGCTACATGGTAGCGCCGTGCAATCACGTCTTCGACAGGGAGTGTCT
GGAGCGCTGGATGGACATCAAGTTGGAGTGTCCTGTCTGCCGgtgctccc
ttcctcatcggTGA back to top
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