rna3459, rna3459 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna3459
Unique Name	rna3459
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2551
Alignment location	CM002461.1:464309..465505 +

Link to JBrowse

Properties


Property Name	Value
Product	50s ribosomal protein l1
Orig transcript id	gnl\|cribi\|Naga_100010g12.6152.mrna
Orig protein id	gnl\|cribi\|Naga_100010g12.6152
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002461.1	supercontig	CM002461.1:464309..465505 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100010g12	gene3333	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna3459	rna3459-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM27182.1	cds3450	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002461.1:464309..465505+
coding sequence from alignment at CM002461.1:464309..465505+

mRNA sequence

>rna3459 ID=rna3459|Name=rna3459|organism=Nannochloropsis gaditana|type=mRNA|length=2551bp
CCGCCGGCGTGTGCAAGGATTGACGGGCTCTCGAGACGCAGGTTGGCTGA
ATTACAAGTCGGAATAGCAGTCCGTATACGGTCAGGAAAGTTAGATTTTC
CAAGTTCCGAGTTGTGTGAATAAATGCGGTATGACGGTGTGAGTGCTACT
CCTCATGCTTGAAGTGTTGAAGCTCCCTTGCGGCATTATTCCAAGAAATC
TCGTAAGCATGTCGACGGACACGACGATCAAGCCTACCATTTTCACACTT
TCAAAAAGCACACAGTTCAAAATTCATCAAGTGTGCGTGTCGGTCGTTGT
GTACTTCTCCGCGTTTCTCCTGCTTCCTCTCATTGTTTTGAGTGGCCCGG
CAGCGTTCCAGGCCGTCTCTTTGCTGTCCCATCATCAAGGAACATTTGTA
TTGCCAGGAAAGCACATGGCACATGTGATCACTGCCGTCGAAGGCACTCA
AGCGGACCTCTGGAAGGTAAAGCGTGCTCTCCTTTCGGTCTCGGACAAGA
CGGGCTTGCTAGAGCTCGCCACGTTTCTGGTGGAGCAGGGCGTGGAGCTT
TTGTCCACGGGGGGGACTGCCAAAGTGATACGAGAGGCGGGACTGCCGGT
CAAGGACGTGTCGGAGTACACCGGCGCCCCCGAGATCTTGGACGGGCGCG
TCAAGACACTCCACCCCAAGGTCCATGGCGGTCTGTTGGGGGTGCGAGGA
AACCCCACGCATGAGTCACAAATGGCGGAGAACGGAATCTCGAACATCGA
CGTTGTGGTGCTGAACCTGTACGCCTTCGAGCACACTGTACAGAAGGGCG
GGGACTTCGCCACATGCATCGAGAACATTGACATTGGCGGGCCGTCCATG
CTGCGCTCCTCGGCCAAGAACCACAAGTACGTCGTTATTGCCACCTCGCC
CTCTCAGTACGGTGAACTCATGGCCGAGATGAAGGCTCATGGCGGAAGCA
CATCCTTGGCCCTGCGAAAGCGCTTCGCCGCGCGCGCCTTTGCCACCTCG
GCGGCCTACGACTCGGCTATCGCCGGATGGATCAATGGCCAGCTCGGTGA
GGCCGCGCCTGTCGTGACGCGCGTCTACACGCCGCAATTCCCCCTCAAGT
ATGGCTGCAACCCCCATCAGGCGCCCGCGGGCATCCTCTCCATCCTCGGC
ACCCCCATGCCTTTCCAGGTCCTGAACGGCACGCCCGGCTACATCAACCT
GCTAGACGCACTCAACGCTTACCAGCTCGTGCGGGAGCTTCGCGCGGCTC
TGGGCTTGGCGGCAGCAGCCTCGTTCAAGCACGTGTCGCCCGCGGGGGCC
GGGGTGGCCGTGCCACTGACCGCGGAGGAGGCCCAGGCCTACGAGGTCGG
AGAACCGGGGGCCTTGACTCCCGTTGCCCTCGCCTACATTCGCGCGCGCG
GTGCGGATCCCATGTGCTCTTTCGGGGACTTTGTGGCCGTGAGCGACGTG
GTAGACGAGGCGACAGCGAAGGTCCTACAGAGGGAGGTGAGTGACGGAAT
CATTGCCCCGGGCTACGAGCCCGCGGCGTTGCAGATCCTGGCCTCCAAGA
AGCAGGGGAAGTTCATTGTCCTGCAGGCCACAGCAGATTTCACGCCTCCC
CCTGTGGAGTATCGGGAGGTCTACGGTGCAGCCTTCAAGCAGCGCCGCAA
CGACGCCTTCCTCTCCCCATCGGATCTGAGCAAAGTGGTGACAACCGCTC
AGCTTCCTGAGGAGGCGGTGCGGGATCTGATCATTGCCTCCATCGCCATC
AAGTACACTCAATCCAATTCGGTTGGCTACGCCTTGAATGGGCAGGTAAT
CGGCGTGGGGGCAGGTCAGCAAAGTCGAGTGGACTGTGTGAAACTAGCGG
GGCGAAAGGTGGAAATCTGGTGGCTGCGACAGCACCCGAAGGTGCGCTCC
CTGGCCTTTAAGCCCACTGTGAAGCGTCAGGACCGCGTCAATGCCCGCGT
GCGCTACATCGAAGGCGACATCACCGCGGCGGAGCGTCCACTCTGGGAGG
CAAACTTCGAGGACGTGCCGTCGCCCCTCACAGAAGATGAGAAGGCGGCT
TTCATGGGAATGCTGAAAGGGGTGAGCTTGTCCTCGGACGCATTTTTCCC
GTTTCGGGACTCCATCGACCACGCCTCCAAGTATGGGGTGACGTACGTTG
TCCAGCCAGGAGGCTCAGTCCAAGATACGCAGGTTACTGAGTGCTGCAAC
AACTACGGTATGGCGATGGCCTTCACAAATGTTCGACTCTTCCATCACTA
GATCGTGGGCGACGTTCTTAGACCGCCAGGTCCACTAACAAAAATATGGA
TTTACCAGGGTAAAGAAAGTAGCCGCAGCTCGCAACCTAGCTAGGCGAGC
TTCGACGTTGCATGACAATGACTCACTCCACCTCCGACAGCCAATATTCT
TTGCAAAATGGTCTACAAAGTTATTTAGCCCGAAATGACGTAGAGATTAC
CGATAAGATACGGTTGAAAGCGAAGTTTTTTTCAGGTTCAAATACAGGGT
GTTTTGAAATACTTTCATTCAAAGAACAAAGCAATACTTTGCGGGCGTAG
A

protein sequence of rna3459

>rna3459-protein ID=rna3459-protein|Name=rna3459|organism=Nannochloropsis gaditana|type=polypeptide|length=308bp
MLRRIRHQEYRVSTALLGSLRGFTAETVRKRRPPSTTVGKAVASLNSARA
SQRSSSPVTSSHSLLQSSPSAPSSSRVTEALPIRDALAAVLQYAKEEKRR
NFTETVDLAIQLGVDPRKPNQSVRGVQTLPNGTGKSVRVAVFARGDDAEA
AKAAGAAVVGAEDLVKAIQDGELAFDRCVATPEVMPLVSRVARVLGPRGL
MPNPKMGTVTKDVGAAVKSAMAGQAQFKADRFGMVHVGVGKVSFEPEALL
ENIRVLMVALGNAKPEGAKGKYFKGVFLTSTMGKAVPVEVATVDPRSSRF
MLEAALTT

mRNA from alignment at CM002461.1:464309..465505+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna3459 ID=rna3459|Name=rna3459|organism=Nannochloropsis gaditana|type=mRNA|length=1197bp|location=Sequence derived from alignment at CM002461.1:464309..465505+ (Nannochloropsis gaditana)
ATGCTTCGGAGAATTCGTCATCAGGAATATAGAGTTTCGACAGCTCTTTT
GGGCTCCCTCAGGGGCTTCACAGCCGAGACTGTCCGAAAACGAAGGCCGC
CGTCCACTACTGTTGGCAAGGCAGTCGCGTCCCTAAATTCTGCCCGGGCA
AGCCAGCGAAGCTCGAGTCcggtcacctcctcccattcacTGTTGCAATC
CTCACCTTCTGCTCCTTCGTCGTCCAGGGTAATACACGCATACAAGCGCG
TCCCgcacctttcttcccccttcttctttacGTTGATGTCTTTGCTCTCG
TCCATCTCGCCGACATACCTTAACTGTGAGCGCGTAAACTTTTACGACCG
TATTGTAGCTAATAAAAAGAATTATGCATGGCGGGCACACAGGTCACAGA
GGCGTTGCCAATAAGAGATGCTTTGGCAGCAGTGCTTCAGTAtgcaaagg
aggaaaaacggaGAAATTTTACCGAGACTGTCGATCTTGCCATTCAGTTG
GGAGTAGATCCTCGAAAGCCCAATCAAAGCGTGCGAGGCGTACAAACATT
GCCCAATGGCACTGGTAAATCTGTTCGGGTGGCTGTGTTCGCCCGCGGAG
ACGTACGTAcaggaggagaatgggaatgctgcaagggaggaggaggatgc
cgagAAGTTTCTTGGGTACCTCCATGGACGCATTCGCTCACGCTCATGCA
CACAACAGGACGCAGAAGCCGCCAAGGCCGCGGGCGCCGCTGTGGTGGGC
GCGGAGGATTTAGTGAAGGCCATCCAAGACGGAGAGCTGGCGTTCGACCG
GTGCGTGGCGACGCCCGAGGTGATGCCGCTGGTGAGTCGGGTGGCGCGGG
TCCTGGGCCCGCGCGGCCTCATGCCCAACCCAAAGATGGGCACCGTCACC
AAGGACGTGGGCGCGGCTGTCAAGTCGGCCATGGCGGGGCAGGCCCAGTT
CAAGGCGGATCGATTCGGGATGGTGCACGTGGGGGTGGGCAAGGTCTCGT
TCGAGCCAGAGGCCCTCTTGGAGAACATCCGGGTATTGATGGTGGCGCTA
GGCAACGCAAAGCCGGAGGGGGCCAAGGGGAAGTATTTCAAGGGTGTCTT
TCTCACCTCCACCATGGGCAAGGCGGtgccggtggaggtggcgacaGTCG
ATCCTCGGTCCTCGCGGTTCATGCTCGAGGCGGCACTCACGACCTGA

Coding sequence (CDS) from alignment at CM002461.1:464309..465505+

>rna3459 ID=rna3459|Name=rna3459|organism=Nannochloropsis gaditana|type=CDS|length=2781bp|location=Sequence derived from alignment at CM002461.1:464309..465505+ (Nannochloropsis gaditana)
ATGCTTCGGAGAATTCGTCATCAGGAATATAGAGTTTCGACAGCTCTTTT
GGGCTCCCTCAGGGGCTTCACAGCCGAGACTGTCCGAAAACGAAGGCCGC
CGTCCACTACTGTTGGCAAGGCAGTCGCGTCCCTAAATTCTGCCCGGGCA
AGCCAGCGAAGCTCGAGTCcggtcacctcctcccattcacTGTTGCAATC
CTCACCTTCTGCTCCTTCGTCGTCCAGGGTCACAGAGGCGTTGCCAATAA
GAGATGCTTTGGCAGCAGTGCTTCAGTAtgcaaaggaggaaaaacggaGA
AATTTTACCGAGACTGTCGATCTTGCCATTCAGTTGGGAGTAGATCCTCG
AAAGCCCAATCAAAGCGTGCGAGGCGTACAAACATTGCCCAATGGCACTG
GTAAATCTGTTCGGGTGGCTGTGTTCGCCCGCGGAGACGACGCAGAAGCC
GCCAAGGCCGCGGGCGCCGCTGTGGTGGGCGCGGAGGATTTAGTGAAGGC
CATCCAAGACGGAGAGCTGGCGTTCGACCGGTGCGTGGCGACGCCCGAGG
TGATGCCGCTGGTGAGTCGGGTGGCGCGGGTCCTGGGCCCGCGCGGCCTC
ATGCCCAACCCAAAGATGGGCACCGTCACCAAGGACGTGGGCGCGGCTGT
CAAGTCGGCCATGGCGGGGCAGGCCCAGTTCAAGGCGGATCGATTCGGGA
TGGTGCACGTGGGGGTGGGCAAGGTCTCGTTCGAGCCAGAGGCCCTCTTG
GAGAACATCCGGGTATTGATGGTGGCGCTAGGCAACGCAAAGCCGGAGGG
GGCCAAGGGGAAGTATTTCAAGGGTGTCTTTCTCACCTCCACCATGGGCA
AGGCGGtgccggtggaggtggcgacaGTCGATCCTCGGTCCTCGCGGTTC
ATGCTCGAGGCGGCACTCACGACCTGAATGCTTCGGAGAATTCGTCATCA
GGAATATAGAGTTTCGACAGCTCTTTTGGGCTCCCTCAGGGGCTTCACAG
CCGAGACTGTCCGAAAACGAAGGCCGCCGTCCACTACTGTTGGCAAGGCA
GTCGCGTCCCTAAATTCTGCCCGGGCAAGCCAGCGAAGCTCGAGTCcggt
cacctcctcccattcacTGTTGCAATCCTCACCTTCTGCTCCTTCGTCGT
CCAGGGTCACAGAGGCGTTGCCAATAAGAGATGCTTTGGCAGCAGTGCTT
CAGTAtgcaaaggaggaaaaacggaGAAATTTTACCGAGACTGTCGATCT
TGCCATTCAGTTGGGAGTAGATCCTCGAAAGCCCAATCAAAGCGTGCGAG
GCGTACAAACATTGCCCAATGGCACTGGTAAATCTGTTCGGGTGGCTGTG
TTCGCCCGCGGAGACGACGCAGAAGCCGCCAAGGCCGCGGGCGCCGCTGT
GGTGGGCGCGGAGGATTTAGTGAAGGCCATCCAAGACGGAGAGCTGGCGT
TCGACCGGTGCGTGGCGACGCCCGAGGTGATGCCGCTGGTGAGTCGGGTG
GCGCGGGTCCTGGGCCCGCGCGGCCTCATGCCCAACCCAAAGATGGGCAC
CGTCACCAAGGACGTGGGCGCGGCTGTCAAGTCGGCCATGGCGGGGCAGG
CCCAGTTCAAGGCGGATCGATTCGGGATGGTGCACGTGGGGGTGGGCAAG
GTCTCGTTCGAGCCAGAGGCCCTCTTGGAGAACATCCGGGTATTGATGGT
GGCGCTAGGCAACGCAAAGCCGGAGGGGGCCAAGGGGAAGTATTTCAAGG
GTGTCTTTCTCACCTCCACCATGGGCAAGGCGGtgccggtggaggtggcg
acaGTCGATCCTCGGTCCTCGCGGTTCATGCTCGAGGCGGCACTCACGAC
CTGAATGCTTCGGAGAATTCGTCATCAGGAATATAGAGTTTCGACAGCTC
TTTTGGGCTCCCTCAGGGGCTTCACAGCCGAGACTGTCCGAAAACGAAGG
CCGCCGTCCACTACTGTTGGCAAGGCAGTCGCGTCCCTAAATTCTGCCCG
GGCAAGCCAGCGAAGCTCGAGTCcggtcacctcctcccattcacTGTTGC
AATCCTCACCTTCTGCTCCTTCGTCGTCCAGGGTCACAGAGGCGTTGCCA
ATAAGAGATGCTTTGGCAGCAGTGCTTCAGTAtgcaaaggaggaaaaacg
gaGAAATTTTACCGAGACTGTCGATCTTGCCATTCAGTTGGGAGTAGATC
CTCGAAAGCCCAATCAAAGCGTGCGAGGCGTACAAACATTGCCCAATGGC
ACTGGTAAATCTGTTCGGGTGGCTGTGTTCGCCCGCGGAGACGACGCAGA
AGCCGCCAAGGCCGCGGGCGCCGCTGTGGTGGGCGCGGAGGATTTAGTGA
AGGCCATCCAAGACGGAGAGCTGGCGTTCGACCGGTGCGTGGCGACGCCC
GAGGTGATGCCGCTGGTGAGTCGGGTGGCGCGGGTCCTGGGCCCGCGCGG
CCTCATGCCCAACCCAAAGATGGGCACCGTCACCAAGGACGTGGGCGCGG
CTGTCAAGTCGGCCATGGCGGGGCAGGCCCAGTTCAAGGCGGATCGATTC
GGGATGGTGCACGTGGGGGTGGGCAAGGTCTCGTTCGAGCCAGAGGCCCT
CTTGGAGAACATCCGGGTATTGATGGTGGCGCTAGGCAACGCAAAGCCGG
AGGGGGCCAAGGGGAAGTATTTCAAGGGTGTCTTTCTCACCTCCACCATG
GGCAAGGCGGtgccggtggaggtggcgacaGTCGATCCTCGGTCCTCGCG
GTTCATGCTCGAGGCGGCACTCACGACCTGA

Synonyms

Publications