EWM27182.1, cds3450 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM27182.1 vs. NCBI_GenBank
Match: gi|553190827|ref|XP_005855271.1| (large subunit ribosomal protein L1 [Nannochloropsis gaditana CCMP526] >gi|422293796|gb|EKU21096.1| large subunit ribosomal protein L1 [Nannochloropsis gaditana CCMP526] >gi|585109362|gb|EWM27182.1| 50s ribosomal protein l1 [Nannochloropsis gaditana]) HSP 1 Score: 615.15 bits (1585), Expect = 0.000e+0 Identity = 308/308 (100.00%), Postives = 308/308 (100.00%), Query Frame = 0
Query: 1 MLRRIRHQEYRVSTALLGSLRGFTAETVRKRRPPSTTVGKAVASLNSARASQRSSSPVTSSHSLLQSSPSAPSSSRVTEALPIRDALAAVLQYAKEEKRRNFTETVDLAIQLGVDPRKPNQSVRGVQTLPNGTGKSVRVAVFARGDDAEAAKAAGAAVVGAEDLVKAIQDGELAFDRCVATPEVMPLVSRVARVLGPRGLMPNPKMGTVTKDVGAAVKSAMAGQAQFKADRFGMVHVGVGKVSFEPEALLENIRVLMVALGNAKPEGAKGKYFKGVFLTSTMGKAVPVEVATVDPRSSRFMLEAALTT 308
MLRRIRHQEYRVSTALLGSLRGFTAETVRKRRPPSTTVGKAVASLNSARASQRSSSPVTSSHSLLQSSPSAPSSSRVTEALPIRDALAAVLQYAKEEKRRNFTETVDLAIQLGVDPRKPNQSVRGVQTLPNGTGKSVRVAVFARGDDAEAAKAAGAAVVGAEDLVKAIQDGELAFDRCVATPEVMPLVSRVARVLGPRGLMPNPKMGTVTKDVGAAVKSAMAGQAQFKADRFGMVHVGVGKVSFEPEALLENIRVLMVALGNAKPEGAKGKYFKGVFLTSTMGKAVPVEVATVDPRSSRFMLEAALTT
Sbjct: 1 MLRRIRHQEYRVSTALLGSLRGFTAETVRKRRPPSTTVGKAVASLNSARASQRSSSPVTSSHSLLQSSPSAPSSSRVTEALPIRDALAAVLQYAKEEKRRNFTETVDLAIQLGVDPRKPNQSVRGVQTLPNGTGKSVRVAVFARGDDAEAAKAAGAAVVGAEDLVKAIQDGELAFDRCVATPEVMPLVSRVARVLGPRGLMPNPKMGTVTKDVGAAVKSAMAGQAQFKADRFGMVHVGVGKVSFEPEALLENIRVLMVALGNAKPEGAKGKYFKGVFLTSTMGKAVPVEVATVDPRSSRFMLEAALTT 308
BLAST of EWM27182.1 vs. NCBI_GenBank
Match: gi|301103448|ref|XP_002900810.1| (50S ribosomal protein L1 [Phytophthora infestans T30-4] >gi|262101565|gb|EEY59617.1| 50S ribosomal protein L1 [Phytophthora infestans T30-4]) HSP 1 Score: 284.648 bits (727), Expect = 1.554e-92 Identity = 144/249 (57.83%), Postives = 187/249 (75.10%), Query Frame = 0
Query: 53 RSSSPVTSSHSLLQSSPSAPSSSRVTEALPIRDALAAVLQYAKEEKRRNFTETVDLAIQLGVDPRKPNQSVRGVQTLPNGTGKSVRVAVFARGDDAEAAKAAGAAVVGAEDLVKAIQDGELAFDRCVATPEVMPLVSRVARVLGPRGLMPNPKMGTVTKDVGAAVKSAMAGQAQFKADRFGMVHVGVGKVSFEPEALLENIRVLMVALGNAKPEGAKGKYFKGVFLTSTMGKAVPVEVATVDPRSSRFM 301
R++S + S L++ + P+ S +P D + L K + R F ET+DLA+QLGVDPRKPNQSVRGV +LPNGTGK VR+AVFARG AE AKAAGA +VGAEDLV+ +Q G+L FDRC+ATP+VMPLV RVAR+LGPRGLMPNPK+GTVT++VG A+ +A GQ +F+A++ G++H GVGK+SF EALLEN+R MVAL +AKPEGAKGKY K L+S+MG + +++ +DP S+ FM
Sbjct: 16 RATSCWVRASSTLETPSTKPTRSPTALGIPPID-IQTALSKCKAQNLRKFDETIDLAVQLGVDPRKPNQSVRGVVSLPNGTGKQVRIAVFARGPKAEEAKAAGATIVGAEDLVEQVQSGKLEFDRCIATPDVMPLVGRVARILGPRGLMPNPKLGTVTQEVGDAIAAARGGQVEFRAEKKGIIHAGVGKMSFSEEALLENVRAFMVALSDAKPEGAKGKYIKAAHLSSSMGPSYNLDIKYLDPSSTSFM 263
BLAST of EWM27182.1 vs. NCBI_GenBank
Match: gi|695397053|ref|XP_009521646.1| (hypothetical protein PHYSODRAFT_327273 [Phytophthora sojae] >gi|348686543|gb|EGZ26358.1| hypothetical protein PHYSODRAFT_327273 [Phytophthora sojae]) HSP 1 Score: 284.263 bits (726), Expect = 3.542e-92 Identity = 152/253 (60.08%), Postives = 190/253 (75.10%), Query Frame = 0
Query: 53 RSSSPVTSSHSLLQSSPSA----PSSSRVTEALPIRDALAAVLQYAKEEKRRNFTETVDLAIQLGVDPRKPNQSVRGVQTLPNGTGKSVRVAVFARGDDAEAAKAAGAAVVGAEDLVKAIQDGELAFDRCVATPEVMPLVSRVARVLGPRGLMPNPKMGTVTKDVGAAVKSAMAGQAQFKADRFGMVHVGVGKVSFEPEALLENIRVLMVALGNAKPEGAKGKYFKGVFLTSTMGKAVPVEVATVDPRSSRFM 301
R+SS + + + SP+A P S V E P D AV + K +K RNF ET+DLAIQLGVDPRKPNQSVRGV +LPNGTGK VR+AVFARG AE AKAAGA +VGAEDLV+ +Q G+L FDRC+ATP+VMPLV RVAR+LGPRGLMPNPK+GTVT +VG A+ +A GQ +F+A++ G++H GVGK+SF EALLEN+R MVAL +AKPEGAKGKY K L+S+MG + +++ +DP S+ FM
Sbjct: 26 RASSTLETPSAAPTRSPTALGLVPRRSNVPE--PAIDVQTAVSK-CKTQKARNFDETIDLAIQLGVDPRKPNQSVRGVVSLPNGTGKQVRIAVFARGPKAEEAKAAGATIVGAEDLVEQVQSGKLEFDRCIATPDVMPLVGRVARILGPRGLMPNPKLGTVTLEVGDAIAAARGGQVEFRAEKKGIIHAGVGKMSFSEEALLENVRAFMVALSDAKPEGAKGKYIKAAHLSSSMGPSYTLDIKYLDPASTSFM 275
BLAST of EWM27182.1 vs. NCBI_GenBank
Match: gi|1214699659|gb|OWZ12409.1| (Ribosomal protein L1 [Phytophthora megakarya]) HSP 1 Score: 283.878 bits (725), Expect = 3.774e-92 Identity = 153/260 (58.85%), Postives = 194/260 (74.62%), Query Frame = 0
Query: 48 ARASQ--RSSSPVTSSHSLLQSSPSA----PSSSRVTEALPIRDALAAVLQYAKEEKRRNFTETVDLAIQLGVDPRKPNQSVRGVQTLPNGTGKSVRVAVFARGDDAEAAKAAGAAVVGAEDLVKAIQDGELAFDRCVATPEVMPLVSRVARVLGPRGLMPNPKMGTVTKDVGAAVKSAMAGQAQFKADRFGMVHVGVGKVSFEPEALLENIRVLMVALGNAKPEGAKGKYFKGVFLTSTMGKAVPVEVATVDPRSSRFM 301
ARAS R+SS + + + SP+A P SS V A PI + + L K + R F ET+DLA+QLGVDPRKPNQSVRGV +LPNGTGK VR+AVFARG AE AKAAGA +VGAEDLV+ +Q G+L FDRC+ATP+VMPLV RVAR+LGPRGLMPNPK+GTVT++VG A+ +A GQ +F+A++ G++H GVGK+SF EALLEN+R MVAL +AKPEGAKGKY K L+S+MG + +++ +DP S+ FM
Sbjct: 15 ARASCWVRASSTLETPSAKSTRSPTALGIVPRSSNVAPA-PID--IQSALSRCKSQNERKFDETIDLAVQLGVDPRKPNQSVRGVVSLPNGTGKQVRIAVFARGPKAEEAKAAGATIVGAEDLVEQVQSGKLEFDRCIATPDVMPLVGRVARILGPRGLMPNPKLGTVTQEVGDAIAAARGGQVEFRAEKKGIIHAGVGKMSFSEEALLENVRAFMVALSDAKPEGAKGKYIKAAHLSSSMGPSYNLDIKYLDPASTSFM 271
BLAST of EWM27182.1 vs. NCBI_GenBank
Match: gi|698818967|ref|XP_009842512.1| (ribosomal protein L1 [Aphanomyces astaci] >gi|574102398|gb|ETV67949.1| ribosomal protein L1 [Aphanomyces astaci]) HSP 1 Score: 282.337 bits (721), Expect = 1.092e-91 Identity = 141/221 (63.80%), Postives = 173/221 (78.28%), Query Frame = 0
Query: 81 LPIRDALAAVLQYAKEEKRRNFTETVDLAIQLGVDPRKPNQSVRGVQTLPNGTGKSVRVAVFARGDDAEAAKAAGAAVVGAEDLVKAIQDGELAFDRCVATPEVMPLVSRVARVLGPRGLMPNPKMGTVTKDVGAAVKSAMAGQAQFKADRFGMVHVGVGKVSFEPEALLENIRVLMVALGNAKPEGAKGKYFKGVFLTSTMGKAVPVEVATVDPRSSRFM 301
+P+ ALAA Q A R F ETVD+ ++LGVDPRKPNQSVR V TLP+GTGK VRVAVFA+GD A+ A+AAGA +VGAEDL+ IQ G+L FDRCVATP++M LV RVARVLGPRGLMPNPK+GTVT+DV AA+ +AM GQ +F+A++ G+VH GVGKVSF +ALL+NIR MVA+G AKPEGAKGKY K L+STMG + ++ +DP S +FM
Sbjct: 45 VPLNVALAACKQGAV----RKFDETVDIVVELGVDPRKPNQSVRSVVTLPHGTGKVVRVAVFAKGDKADEARAAGATIVGAEDLLADIQAGKLDFDRCVATPDMMALVGRVARVLGPRGLMPNPKLGTVTQDVTAAITAAMGGQVEFRAEKKGIVHAGVGKVSFSDDALLDNIRAFMVAVGEAKPEGAKGKYVKACHLSSTMGHGIRLDPRQLDPSSPQFM 261
BLAST of EWM27182.1 vs. NCBI_GenBank
Match: gi|566013435|gb|ETI36346.1| (ribosomal protein L1 [Phytophthora parasitica P1569] >gi|567950866|gb|ETK76573.1| ribosomal protein L1 [Phytophthora parasitica] >gi|567979507|gb|ETL29986.1| ribosomal protein L1 [Phytophthora parasitica] >gi|568009023|gb|ETL83237.1| ribosomal protein L1 [Phytophthora parasitica] >gi|568038943|gb|ETM36457.1| ribosomal protein L1 [Phytophthora parasitica] >gi|570317119|gb|ETO65067.1| ribosomal protein L1 [Phytophthora parasitica P1976] >gi|570940929|gb|ETP06186.1| ribosomal protein L1 [Phytophthora parasitica CJ01A1] >gi|570971167|gb|ETP34286.1| ribosomal protein L1 [Phytophthora parasitica P10297] >gi|970655469|gb|KUF93628.1| Peptidyl-prolyl cis-trans isomerase [Phytophthora nicotianae]) HSP 1 Score: 281.182 bits (718), Expect = 4.840e-91 Identity = 149/253 (58.89%), Postives = 188/253 (74.31%), Query Frame = 0
Query: 53 RSSSPVTSSHSLLQSSPSA----PSSSRVTEALPIRDALAAVLQYAKEEKRRNFTETVDLAIQLGVDPRKPNQSVRGVQTLPNGTGKSVRVAVFARGDDAEAAKAAGAAVVGAEDLVKAIQDGELAFDRCVATPEVMPLVSRVARVLGPRGLMPNPKMGTVTKDVGAAVKSAMAGQAQFKADRFGMVHVGVGKVSFEPEALLENIRVLMVALGNAKPEGAKGKYFKGVFLTSTMGKAVPVEVATVDPRSSRFM 301
R+SS + + S SP+A P S V E PI + L K + R F ET+DLA+QLGVDPRKPNQSVRGV +LPNGTGK VR+AVFARG AE AKAAGA +VGAEDLV+ +Q G+L FDRC+ATP+VMPLV RVAR+LGPRGLMPNPK+GTVT++VG A+ +A GQ +F+A++ G++H GVGK+SF EALLEN+R MVAL +AKPEGAKGKY K L+S+MG + +++ +DP S+ FM
Sbjct: 25 RASSTLETPSSKPTRSPTALGLVPRRSNVPEP-PID--IQTALSKCKAQNARKFDETIDLAVQLGVDPRKPNQSVRGVVSLPNGTGKQVRIAVFARGPKAEEAKAAGATIVGAEDLVEQVQSGKLEFDRCIATPDVMPLVGRVARILGPRGLMPNPKLGTVTQEVGDAIAAARGGQVEFRAEKKGIIHAGVGKMSFSEEALLENVRAFMVALSDAKPEGAKGKYIKAAHLSSSMGPSYNLDIKYLDPASTSFM 274
BLAST of EWM27182.1 vs. NCBI_GenBank
Match: gi|675174269|ref|XP_008896019.1| (ribosomal protein L1 [Phytophthora parasitica INRA-310] >gi|568103671|gb|ETN18328.1| ribosomal protein L1 [Phytophthora parasitica INRA-310]) HSP 1 Score: 280.796 bits (717), Expect = 8.529e-91 Identity = 149/253 (58.89%), Postives = 188/253 (74.31%), Query Frame = 0
Query: 53 RSSSPVTSSHSLLQSSPSA----PSSSRVTEALPIRDALAAVLQYAKEEKRRNFTETVDLAIQLGVDPRKPNQSVRGVQTLPNGTGKSVRVAVFARGDDAEAAKAAGAAVVGAEDLVKAIQDGELAFDRCVATPEVMPLVSRVARVLGPRGLMPNPKMGTVTKDVGAAVKSAMAGQAQFKADRFGMVHVGVGKVSFEPEALLENIRVLMVALGNAKPEGAKGKYFKGVFLTSTMGKAVPVEVATVDPRSSRFM 301
R+SS + + S SP+A P S V E PI + L K + R F ET+DLA+QLGVDPRKPNQSVRGV +LPNGTGK VR+AVFARG AE AKAAGA +VGAEDLV+ +Q G+L FDRC+ATP+VMPLV RVAR+LGPRGLMPNPK+GTVT++VG A+ +A GQ +F+A++ G++H GVGK+SF EALLEN+R MVAL +AKPEGAKGKY K L+S+MG + +++ +DP S+ FM
Sbjct: 25 RASSTLETPSSKPTRSPTALGLVPRRSNVPEP-PID--IQTALSKCKAQNARKFDETIDLAVQLGVDPRKPNQSVRGVVSLPNGTGKPVRIAVFARGPKAEEAKAAGATIVGAEDLVEQVQSGKLEFDRCIATPDVMPLVGRVARILGPRGLMPNPKLGTVTQEVGDAIAAARGGQVEFRAEKKGIIHAGVGKMSFSEEALLENVRAFMVALSDAKPEGAKGKYIKAAHLSSSMGPSYNLDIKYLDPASTSFM 274
BLAST of EWM27182.1 vs. NCBI_GenBank
Match: gi|953486784|emb|CEG48846.1| (50s ribosomal protein l1 [Plasmopara halstedii]) HSP 1 Score: 276.559 bits (706), Expect = 3.173e-89 Identity = 132/211 (62.56%), Postives = 171/211 (81.04%), Query Frame = 0
Query: 91 LQYAKEEKRRNFTETVDLAIQLGVDPRKPNQSVRGVQTLPNGTGKSVRVAVFARGDDAEAAKAAGAAVVGAEDLVKAIQDGELAFDRCVATPEVMPLVSRVARVLGPRGLMPNPKMGTVTKDVGAAVKSAMAGQAQFKADRFGMVHVGVGKVSFEPEALLENIRVLMVALGNAKPEGAKGKYFKGVFLTSTMGKAVPVEVATVDPRSSRFM 301
++ K +K RNF ETVDLA+QLGVDPRKPNQSVRG+ +LPNGTGK VR+AVFARG AE AKAAGA +VGAEDLV+ IQ G++ FDRC+ATP++MPLV R+AR+LGPRGLMPNPK+GTVT+++G A+ +A GQ F+A++ G++H GVGK+SF EALLEN+R MVAL +AKPEGAKGKY K +++TMG + +++ +DP + FM
Sbjct: 62 IRKCKAQKARNFDETVDLAVQLGVDPRKPNQSVRGIVSLPNGTGKQVRIAVFARGPKAEEAKAAGATIVGAEDLVEQIQSGKMEFDRCIATPDIMPLVGRIARILGPRGLMPNPKLGTVTQEIGDAIVAARGGQVAFRAEKNGIIHAGVGKLSFSEEALLENVRAFMVALSDAKPEGAKGKYIKAAHVSTTMGPSYSLDIKYLDPALTSFM 272
BLAST of EWM27182.1 vs. NCBI_GenBank
Match: gi|675174271|ref|XP_008896020.1| (ribosomal protein L1 [Phytophthora parasitica INRA-310] >gi|568103672|gb|ETN18329.1| ribosomal protein L1 [Phytophthora parasitica INRA-310]) HSP 1 Score: 282.337 bits (721), Expect = 1.278e-88 Identity = 149/253 (58.89%), Postives = 188/253 (74.31%), Query Frame = 0
Query: 53 RSSSPVTSSHSLLQSSPSA----PSSSRVTEALPIRDALAAVLQYAKEEKRRNFTETVDLAIQLGVDPRKPNQSVRGVQTLPNGTGKSVRVAVFARGDDAEAAKAAGAAVVGAEDLVKAIQDGELAFDRCVATPEVMPLVSRVARVLGPRGLMPNPKMGTVTKDVGAAVKSAMAGQAQFKADRFGMVHVGVGKVSFEPEALLENIRVLMVALGNAKPEGAKGKYFKGVFLTSTMGKAVPVEVATVDPRSSRFM 301
R+SS + + S SP+A P S V E PI + L K + R F ET+DLA+QLGVDPRKPNQSVRGV +LPNGTGK VR+AVFARG AE AKAAGA +VGAEDLV+ +Q G+L FDRC+ATP+VMPLV RVAR+LGPRGLMPNPK+GTVT++VG A+ +A GQ +F+A++ G++H GVGK+SF EALLEN+R MVAL +AKPEGAKGKY K L+S+MG + +++ +DP S+ FM
Sbjct: 240 RASSTLETPSSKPTRSPTALGLVPRRSNVPEP-PID--IQTALSKCKAQNARKFDETIDLAVQLGVDPRKPNQSVRGVVSLPNGTGKQVRIAVFARGPKAEEAKAAGATIVGAEDLVEQVQSGKLEFDRCIATPDVMPLVGRVARILGPRGLMPNPKLGTVTQEVGDAIAAARGGQVEFRAEKKGIIHAGVGKMSFSEEALLENVRAFMVALSDAKPEGAKGKYIKAAHLSSSMGPSYNLDIKYLDPASTSFM 489
BLAST of EWM27182.1 vs. NCBI_GenBank
Match: gi|673026886|ref|XP_008867404.1| (ribosomal protein L1 [Aphanomyces invadans] >gi|574477451|gb|ETW04448.1| ribosomal protein L1 [Aphanomyces invadans]) HSP 1 Score: 271.552 bits (693), Expect = 2.143e-87 Identity = 142/221 (64.25%), Postives = 172/221 (77.83%), Query Frame = 0
Query: 81 LPIRDALAAVLQYAKEEKRRNFTETVDLAIQLGVDPRKPNQSVRGVQTLPNGTGKSVRVAVFARGDDAEAAKAAGAAVVGAEDLVKAIQDGELAFDRCVATPEVMPLVSRVARVLGPRGLMPNPKMGTVTKDVGAAVKSAMAGQAQFKADRFGMVHVGVGKVSFEPEALLENIRVLMVALGNAKPEGAKGKYFKGVFLTSTMGKAVPVEVATVDPRSSRFM 301
LP+ AL Q A R F ETVD+ ++LGVDPRKPNQSVR V +LP+GTGK VRVAVFA+GD A+ A+AAGAA+VGAEDL+ IQ G+L FDRCVATP++M LV RVARVLGPRGLMPNPK+GTVT+DV AA+K+A GQ +F+A++ G+VH GVGKVSF EALLENIR MVA+G AKPEGAKGKY K L+STMG+ + ++ +DP S FM
Sbjct: 46 LPLNVALVECKQGAV----RKFDETVDIVVELGVDPRKPNQSVRSVVSLPHGTGKVVRVAVFAKGDKADEARAAGAAIVGAEDLLADIQAGKLDFDRCVATPDMMALVGRVARVLGPRGLMPNPKLGTVTQDVTAAIKAAQGGQVEFRAEKKGIVHAGVGKVSFSDEALLENIRAFMVAVGEAKPEGAKGKYIKACHLSSTMGRGIRLDTRYLDPSSPHFM 262 The following BLAST results are available for this feature:
BLAST of EWM27182.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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