rna3456, rna3456 (mRNA) Nannochloropsis gaditana

Overview
Namerna3456
Unique Namerna3456
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length240
Alignment locationCM002461.1:454776..456995 +

Link to JBrowse

Properties
Property NameValue
Productlamin-b receptor
Orig transcript idgnl|cribi|Naga_100010g9.6138.mrna
Orig protein idgnl|cribi|Naga_100010g9.6138
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002461.1supercontigCM002461.1:454776..456995 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100010g9gene3330Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna3456rna3456-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM27168.1cds3447Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna3456 ID=rna3456|Name=rna3456|organism=Nannochloropsis gaditana|type=mRNA|length=240bp
ATGCAAGCTTACGAAGGAACACACAAAATTACAGCTTTTTCAATCATGCT
CGGTGTTGTTCGGGGAATCGCGGCCCGCGTCAAGCCTGCCAAGAACCAGG
CGCAGCTCATTTCCAGGCGCATGATGGGAGGCGACGGTGGTCACCATCCC
CACTACGTTTTTGAACCCCCTTTCAACAAAACGTTTGTGGCCGTGCTCGT
GGGCGGCGGTGTCACTCTCGGTACTGGCCTCGTTGTGTAA
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protein sequence of rna3456

>rna3456-protein ID=rna3456-protein|Name=rna3456|organism=Nannochloropsis gaditana|type=polypeptide|length=653bp
MVSTRRRRSPGSKKENAATAPEIRTVRRRTVAAVTSSGTDNIPLTPTSKI
LGSPPRKKAPKSRSIDSPLSEEDNAPTRPKATRKKPMSKALSASAPSHPP
EAVASSFKYEFGGPWGALGIVVGLPVVVMGLYYFCPNFMSSASPSSSSSK
YPLSFRSSTSPLACLRWTDMAHFLTSTLPALLRALPSTFSTFALQARRSP
HNTASAFMAIIQHIPGALKARGSALVALVQNELWDPLAFACIVAWFCFQV
VLERLLPGEVALGVPLLGAEGLRLPYKLNGHLAFWISLLLLVHGCPRFAV
PVEDEGILPTIVGDEGDEQFVYTASAAGDAVLQHAGQAANGAIPVLGELT
GFGPFPLEKLYDHFPQFAFAAVVFSFGLSLLLYLASFRKGARLADGGRSG
NVMYDFYMGRELNPRLGSFDWKYFCELRPGLIGWVALNMGMLMKQQQLQA
VTGEPPSWPLVLVNVFQGWYVLDALLNERAILTTMDITTDGFGFMLAFGD
LAWVPFTYSLQARYLVGRPVSLSTYALAGLSAMHLVGYWIFRQANSTKDA
FRRDPTSVPHVRYMDTIRGTKLMVSGWWGWARKINYTGDWLMALAWCGLC
GPTHVLPYFYAIYFGILLVHRAARDDHLCSLKYGADWQKYKKEVKWLFLP
GIY
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mRNA from alignment at CM002461.1:454776..456995+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna3456 ID=rna3456|Name=rna3456|organism=Nannochloropsis gaditana|type=mRNA|length=2220bp|location=Sequence derived from alignment at CM002461.1:454776..456995+ (Nannochloropsis gaditana)
CTCGCGCGCTACGAAGTGAAGCGACTTCGCAACCATGGTAAGCACTAGGA
GAAGGCGCTCGCCTGGgagcaaaaaggaaaatgcTGCGACAGCTCCTGAA
ATTAGAACTGTTAGGCGGCGTACTGTGGCTGCTGTGACGTCTAGTGGCAC
GGATAACATCCCGTTGACCCCAACCTCCAAGATTCTTGGAAGCCCTCCTC
GAAAAAAGGCGCCAAAATCACGTTCTATTGACTCACCCCTATCAGAGGAG
GATAATGCGCCCACTCGCCCGAAAGCCACGAGGAAAAAACCGATGTCGAA
AGCACTATCAGCCTCAGCACCTTCTCATCCACCGGAAGCTGTGGCCTCGT
CTTTTAAGTACGAGTTTGGCGGGCCTTGGGGTGCCCTGGGGATCGTGGTC
GGCCTGCCTGTAGTCGTGATGGGGCTGTACTATTTTTGTCCAAACTTTAT
GTCTTCGGCGTCCCCgtcatcatcgtcgtcgaagtaccctctctccttca
gATCCTCCACTTCTCCCCTGGCATGCCTGCGTTGGACTGACATGGCCCAT
TTTCTGACCTCAACGctgcctgccctcctccgagCGCTGCCGagcacctt
ctccaccttcGCTTTGCAAGCCAGGCGCTCACCGCACAACACGGCAAGTG
CCTTCATGGCAATCATTCAACACATCCCCGGCGCCCTCAAGGCCCGGGGT
TCGGCGCTCGTAGCCCTCGTACAAAACGAGCTCTGGGACCCCCTGGCCTT
TGCCTGCATAGTCGCCTGGTTCTGCTTTCAGGTCGTTTTGGAGCGCTTGC
TCCCCGGTGAGGTAGCTTTGGGTGTGCCCCTGTTAGGAGCAGAAGGGCTG
CGTCTTCCGTACAAGTTGAACGGGCACTTGGCGTTCTGGATCTCTCTTTT
GCTGCTAGTTCACGGCTGTCCGCGGTTCGCGGTGCcagtggaggacgagg
gaatcCTGCCCACAATCGTTGGAGATGAAGGGGATGAGCAATTTGTGTAC
ACGGCCTCGGCCGCAGGAGACGCAGTGTTGCAGCACGCCGGACAGGCCGC
TAACGGCGCTATCCCCGTGCTCGGTGAACTAACTGGTTTcggtccctttc
ctcttgaAAAGCTCTACGACCACTTCCCTCAGTTCGCCTTCGCGGCCGTG
GTCTTTTCTTTCGGCctgtccctgctcctctACCTAGCCTCTTTTCGAAA
GGGTGCTCGGCTAGCCGACGGGGGACGGAGCGGGAATGTCATGTACGATT
TCTACATGGGCCGCGAACTGAACCCTCGTCTGGGCAGCTTTGACTGGAAG
TATTTCTGTGAGCTGCGCCCTGGGCTCATTGGATGGGTGGCATTGAATAT
GGGAATGCTGATGaaacagcagcagcttcaGGCCGTCACGGGGGAGCCTC
CCAGCTGGCCCCTGGTGCTGGTGAACGTCTTCCAGGGGTGGTACGTCCTA
GACGCCCTCCTGAACGAGCGTGCCATTCTAACCACCATGGACATCACCAC
GGACGGCTTCGGCTTCATGCTGGCCTTCGGCGACCTTGCCTGGGTGCCGT
TCACCTACTCTTTGCAAGCGCGCTACCTGGTCGGccgccctgtctccctc
tccacctacGCGTTGGCGGGCCTCTCGGCCATGCACCTGGTGGGCTACTG
GATCTTCCGGCAGGCGAACTCGACCAAGGACGCTTTCCGCCGCGACCCCA
CAAGCGTTCCGCATGTCCGTTATATGGACACAATCCGAGGGACCAAGCTC
ATGGTTTCGGGctggtggggatgggcgcGCAAGATCAACTACACGGGGGA
CTGGCTGATGGCCTTGGCATGGTGCGGGCTTTGTGGACCGACGCACGTGC
TACCCTATTTCTATGCCATTTACTTTGGGATTCTGCTTGTGCATCGAGCG
GCCCGCGACGATCATTTGTGTTCCCTGAAATATGGCGCAGACTGGCAAAA
ATACAAAAAAGAGGTTAAGTGGCTCTTTCTGCCCGGAATCTACTGAGATA
CTGAGGATCATGTTTATGAGGAGCGGGCAGTGAGACCGCGACAGTTTCAT
GCATTTGGAAGTAGGGGACTTGGGGAAATTCAAAAGGATATGAAAGGTTA
CACTGAGAAATCTTGACGGCGAAAATAACGTAAAGTACTGGATTGATATG
AAGGAGTGGGTGATAAAGCTATAATCGACCGGCAAACGGACAACACGGTA
CCTCAAAATCAATGCTCAAT
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Coding sequence (CDS) from alignment at CM002461.1:454776..456995+

>rna3456 ID=rna3456|Name=rna3456|organism=Nannochloropsis gaditana|type=CDS|length=1962bp|location=Sequence derived from alignment at CM002461.1:454776..456995+ (Nannochloropsis gaditana)
ATGGTAAGCACTAGGAGAAGGCGCTCGCCTGGgagcaaaaaggaaaatgc
TGCGACAGCTCCTGAAATTAGAACTGTTAGGCGGCGTACTGTGGCTGCTG
TGACGTCTAGTGGCACGGATAACATCCCGTTGACCCCAACCTCCAAGATT
CTTGGAAGCCCTCCTCGAAAAAAGGCGCCAAAATCACGTTCTATTGACTC
ACCCCTATCAGAGGAGGATAATGCGCCCACTCGCCCGAAAGCCACGAGGA
AAAAACCGATGTCGAAAGCACTATCAGCCTCAGCACCTTCTCATCCACCG
GAAGCTGTGGCCTCGTCTTTTAAGTACGAGTTTGGCGGGCCTTGGGGTGC
CCTGGGGATCGTGGTCGGCCTGCCTGTAGTCGTGATGGGGCTGTACTATT
TTTGTCCAAACTTTATGTCTTCGGCGTCCCCgtcatcatcgtcgtcgaag
taccctctctccttcagATCCTCCACTTCTCCCCTGGCATGCCTGCGTTG
GACTGACATGGCCCATTTTCTGACCTCAACGctgcctgccctcctccgag
CGCTGCCGagcaccttctccaccttcGCTTTGCAAGCCAGGCGCTCACCG
CACAACACGGCAAGTGCCTTCATGGCAATCATTCAACACATCCCCGGCGC
CCTCAAGGCCCGGGGTTCGGCGCTCGTAGCCCTCGTACAAAACGAGCTCT
GGGACCCCCTGGCCTTTGCCTGCATAGTCGCCTGGTTCTGCTTTCAGGTC
GTTTTGGAGCGCTTGCTCCCCGGTGAGGTAGCTTTGGGTGTGCCCCTGTT
AGGAGCAGAAGGGCTGCGTCTTCCGTACAAGTTGAACGGGCACTTGGCGT
TCTGGATCTCTCTTTTGCTGCTAGTTCACGGCTGTCCGCGGTTCGCGGTG
CcagtggaggacgagggaatcCTGCCCACAATCGTTGGAGATGAAGGGGA
TGAGCAATTTGTGTACACGGCCTCGGCCGCAGGAGACGCAGTGTTGCAGC
ACGCCGGACAGGCCGCTAACGGCGCTATCCCCGTGCTCGGTGAACTAACT
GGTTTcggtccctttcctcttgaAAAGCTCTACGACCACTTCCCTCAGTT
CGCCTTCGCGGCCGTGGTCTTTTCTTTCGGCctgtccctgctcctctACC
TAGCCTCTTTTCGAAAGGGTGCTCGGCTAGCCGACGGGGGACGGAGCGGG
AATGTCATGTACGATTTCTACATGGGCCGCGAACTGAACCCTCGTCTGGG
CAGCTTTGACTGGAAGTATTTCTGTGAGCTGCGCCCTGGGCTCATTGGAT
GGGTGGCATTGAATATGGGAATGCTGATGaaacagcagcagcttcaGGCC
GTCACGGGGGAGCCTCCCAGCTGGCCCCTGGTGCTGGTGAACGTCTTCCA
GGGGTGGTACGTCCTAGACGCCCTCCTGAACGAGCGTGCCATTCTAACCA
CCATGGACATCACCACGGACGGCTTCGGCTTCATGCTGGCCTTCGGCGAC
CTTGCCTGGGTGCCGTTCACCTACTCTTTGCAAGCGCGCTACCTGGTCGG
ccgccctgtctccctctccacctacGCGTTGGCGGGCCTCTCGGCCATGC
ACCTGGTGGGCTACTGGATCTTCCGGCAGGCGAACTCGACCAAGGACGCT
TTCCGCCGCGACCCCACAAGCGTTCCGCATGTCCGTTATATGGACACAAT
CCGAGGGACCAAGCTCATGGTTTCGGGctggtggggatgggcgcGCAAGA
TCAACTACACGGGGGACTGGCTGATGGCCTTGGCATGGTGCGGGCTTTGT
GGACCGACGCACGTGCTACCCTATTTCTATGCCATTTACTTTGGGATTCT
GCTTGTGCATCGAGCGGCCCGCGACGATCATTTGTGTTCCCTGAAATATG
GCGCAGACTGGCAAAAATACAAAAAAGAGGTTAAGTGGCTCTTTCTGCCC
GGAATCTACTGA
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Synonyms
Publications