rna3453, rna3453 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna3453
Unique Name	rna3453
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1696
Alignment location	CM002461.1:451218..453113 +

Link to JBrowse

Properties


Property Name	Value
Product	mitochondrial import inner membrane translocase subunit tim50
Orig transcript id	gnl\|cribi\|Naga_100010g6.6149.mrna
Orig protein id	gnl\|cribi\|Naga_100010g6.6149
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002461.1	supercontig	CM002461.1:451218..453113 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100010g6	gene3327	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna3453	rna3453-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM27179.1	cds3444	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002461.1:451218..453113+
coding sequence from alignment at CM002461.1:451218..453113+

mRNA sequence

>rna3453 ID=rna3453|Name=rna3453|organism=Nannochloropsis gaditana|type=mRNA|length=1696bp
CAGGGACATTGTGATGACGGGGAGGGATGATTATCAAAGTGGAAGTGGAG
GCTGTGGTGAAATACTGCGCAGTGGCTTTGGGAAAAACGGAGGAAATTGC
GAGCAAAACGTAGCACATCGACCCGTCCCCCCACCGACCTCAACGTCGTT
AGCCACTCCGGAGGAGATGCACAAGGAGCAACAACATTTGTTAGAGGTGG
TTACTGCCTTCTTGGAGTATAGCAAATTTGCTGGAATGGAGTTGGAGCGG
CGATGGGTCCATTTAGGCCGTCTTCCGGAGCACTACGCTAAATTGCTTCC
TCCTCACTCGTTGGCACCCGCCCTGCGGGAGCACCGCAAGGCCATTGTTG
ACAACCAAGCCTTTTTAAATGCGGTGGTAAGAGGTGTCCATGAAATTGCA
CCTGCTGAGGGCATACTGGACCAAGCTCAAAAACAGCTAGCGCGACAAGC
AACGTTAGCTCCAAGACAAATTCTAACAAGCCCAGCGAATATGACCAAAA
TTTATGCCACCCTCCACAGTTGCATGCGAGAATGGTCCGAGGAGGGGGCC
GGTGAGCGTGCTGCATGTTTTGATGTTATTCTGGACGCTTTAGTTGAGTT
TTTGCCCGTGGATGACTCGAATCGAGGTCGGCAGAGAGTACTGGTGCCGG
GCGCGGGCCTTGGGCGCTTACCATTAGAAGTTGTCGGCCGCGGTTACGCC
TGCCAAGGAAATGAATTTTCCTATTTCATGCTTTTGACCTCGAACTTTCT
CTTGAACCACGGAGAAAGTGCGAAAAGTCTCCGCCTGTTCCCGTTCGCGG
AGCAGAGTTGCAACCTCGTCAGGCTCGGCGACAACGTGAGGCCGGTGCTG
GTTCCAGATGTGTCTCCCGCTGAGATGTTGCGAGAGCGTGAGGTGGAAGA
GGGGCCCACCGAAGAGGAAAGATCGGCCAATGCGAAGGCAAGAGACGGAA
GGAAACGAGAGGCACCACGCGGGAGGGGGCCTGAGATGAAGCTGGAAGTG
GGGGGGGAGAAGGGGGAGGACCGGGACGAGGAAGACGGGTATGGAGAGCA
GGAATGCCATGATGCGGCCCATCTTCCTCGGAAATGTCTTACACCAGACT
TCAGCATGACGGCGGGGGAGTTCCTGGAGGTCTACGGGGAGCAACGAGGC
TGCTGGGACGCCCTGGTCACCTGCTTCTTCCTGGATACGGCGCCCGTGGT
GTTCGAATACATGGAGACCATTCATCGGCTCCTTCGACCAGGGGGTATTT
GGATTAATTTTGGACCCCTCCTATACCATTGGAAGGGCGGAGGGCCCATG
GGCGTGGGGGAGGAGGAGGATGAGCGTTTCAGACGGTCGGTCGAGCTTTC
CTGGGAGGAGATCAGGCATGTCATGACGGGACAGGAGGGGGAAGGGGGGG
GTGCTTTCCGTTTCGATATGAAAAGGGAAGACTTTTGCGGGCCCGTTACC
TACGCGGCGGATCCCACGTCGATGATGCGAACAGTATACGACTGTGTCTT
CTTCGTTGCCGCGAAGAAGGGGGGGGAGGGCGATCGAGGAGACGCGGAGT
GGTTGGCGCCACAGGCGCCCGTGCAGGGTAATGTAAAAAGAGCATTAAAC
ATTTAGTCTCGATAACAAGTGGGAAGTGAATTTTGGGTAGAGAACTCTGC
GGACTGCGGAGTTCGCGTGCTCCAAAATATCAAGTAATGTGGTGTG

protein sequence of rna3453

>rna3453-protein ID=rna3453-protein|Name=rna3453|organism=Nannochloropsis gaditana|type=polypeptide|length=456bp
MASCAISASASLCRRVCKRHFFRSRFPPQRSFCAAEGQAGGTGASNANAT
GIAITSREARRQKWLKEKAAAQEASAVGSKAGSSEGDSAAMAAGPASSGA
APSHAASAAIKLLATGGAAGVAYVVYETSAGDKSTDDVLRASPLGRPYAW
LYDAVFSPFVNPSREKLLPDWHSIPNIPPDAPCPPTLVLDLEDTLVHATW
DPKYGWRYAKRPGVDRLLQDLSKYYEIVLFSPSNFGVVDPITWTLDKQGL
IMHRLYKDSTRFHQGKHVKDLSKLNRDLRKVVIVDDDPEAFQFQPENGIR
IKPFRNAKDKADRSLEKLRGFLLALVMEGVADDIPAVLRQFQGLDAEQIG
DAYASMLRRAQVREIEKQQRGLGGLLRSGRAFQSMGHGLPGNAARSPAAP
TRLSAKDIVGEPMGESAQPNSTVAAAAAVPDQPHQTPPPRPGRSRRASSG
SGTRIT

mRNA from alignment at CM002461.1:451218..453113+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna3453 ID=rna3453|Name=rna3453|organism=Nannochloropsis gaditana|type=mRNA|length=1896bp|location=Sequence derived from alignment at CM002461.1:451218..453113+ (Nannochloropsis gaditana)
GGATACTCTTGTTTAATGCTGCCCATTCCACTCAACAGGTCGCATTGAAT
CAACCACACACGGTGCACGTGAATTTCATGGCCAGCTGTGCGATATCGGC
CTCTGCGTCTCTATGCCGGCGTGTGTGTAAGAGACATTTTTTCAGATCGC
GCTTTCCACCACAACGATCGTTTTGTGCTGCAGAAGGGCAAGCTGGAGGG
ACGGGCGCATCAAATGCGAACGCCACTGGCATTGCGATTACTTCGAGGGA
AGCAAGGCGTCAAAAGTGgttgaaagagaaagcggcgGCTCAAGAGGCGT
CCGCTGTAGGATCAAAGGTAGGCTTACGAAGTGTCGAGGGTCACACGATT
GGCAGGGCATGGAATTGGCGGAGCACATTGCAAGCGCATGTTTGCGGGTG
CAACTTTCCTTCATGATTGATTTATTTTTGCTTTCAAAAATACACGCATA
TCGTTGTTGGAGCAGGCAGGCAGCTCGGAGGGTGATTCCGCGGCGATGGC
TGctggccctgcctcctcgggCGCCGCTCCCAGCCATGCAGCCTCCGCCG
CGATCAAACTCCTGGCTACCGGTGGAGCGGCAGGTGTTGCATACGTGGTT
TACGAAACTTCGGCTGGCGACAAAAGTACCGACGacgtcctccgcgcctc
ccccctgggTCGCCCTTACGCGTGGCTTTACGACGCAGTCTTCTCACCCT
TCGTCAATCCCTCCCGCGAAAAGCTCCTGCCCGACTGGCACAGTATTCCC
AACATCCCACCGGacgcgccctgccccccgacGCTCGTACTCGACCTAGA
GGATACCCTGGTTCACGCGACCTGGGACCCGAAGTACGGCTGGAGGTATG
CCAAACGTCCTGGCGTGGACCGCCTCCTGCAGGACCTGAGCAAGTACTAC
GAGATCGTGCTCTTCTCGCCCAGCAACTTCGGGGTGGTCGACCCCATCAC
CTGGACCCTGGATAAACAGGGCCTGATCATGCACCGGCTCTACAAGGACT
CGACGCGCTTTCACCAGGGCAAGCACGTCAAGGACCTGAGTAAGTTGAAC
CGGGACCTGCGCAAGGTGGTGATTGTGGACGACGACCCCGAGGCCTTCCA
GTTCCAGCCCGAGAATGGGATCCGCATTAAGCCTTTCCGCAATgccaagg
acaaggcggatCGCTCGCTCGAGAAGCTCCGGGGCTTCCTGCTAGCCCTG
GTCATGGAGGGCGTCGCCGACGACATCCCCGCCGTTCTCCGCCAGTTCCA
AGGCCTGGACGCGGAGCAGATCGGGGACGCCTACGCCAGTATGCTGCGAC
GGGCCCAAGTCCGGGAGATAGAGAAGCAGCAGAGGGGTCTGGGCGGACTC
TTGCGGTCGGGGAGGGCCTTTCAGAGCATGGGCCACGGCTTGCCCGGGAA
CGCTGCCCGCTCGCCCGCGGCGCCCACCCGCCTCTCGGCCAAGGACATTG
TGGGGGAGCCGATGGGGGAAAGCGCACAGCCAAACTCcaccgtggcggcg
gcagcggcggtgCCCGACCAGCCCCACCagactccccccccccgcccggg
ccgGTCAAGAAGGGCAAGCTCTGGCAGCGGTACCAGGATTActtgaagga
ggcggaagaggaccaGAGGCGCAAGCTGGAGTTGTGGagcaagaagcagc
agcagcgggaggaagaagcacgcCGACAGGCCATCGCggcgggagtgggg
gggCAATGAAGGGCCAATGTCGTAGCCGACGCGCTAGACATTTAAAAATA
AATCATTATGAAACATCTTTTCACAATCTCTACATGTTTTTGCTTTCAAA
AACGATGTAGTTGTTTGCCTTGTTTTTTTGGCAGCCGTCCACGGCGAGGG
ATTGGACAAGCTTCCACGCGCGAATCAAATAGAACATCCATAAAGC

Coding sequence (CDS) from alignment at CM002461.1:451218..453113+

>rna3453 ID=rna3453|Name=rna3453|organism=Nannochloropsis gaditana|type=CDS|length=2742bp|location=Sequence derived from alignment at CM002461.1:451218..453113+ (Nannochloropsis gaditana)
ATGGCCAGCTGTGCGATATCGGCCTCTGCGTCTCTATGCCGGCGTGTGTG
TAAGAGACATTTTTTCAGATCGCGCTTTCCACCACAACGATCGTTTTGTG
CTGCAGAAGGGCAAGCTGGAGGGACGGGCGCATCAAATGCGAACGCCACT
GGCATTGCGATTACTTCGAGGGAAGCAAGGCGTCAAAAGTGgttgaaaga
gaaagcggcgGCTCAAGAGGCGTCCGCTGTAGGATCAAAGGCAGGCAGCT
CGGAGGGTGATTCCGCGGCGATGGCTGctggccctgcctcctcgggCGCC
GCTCCCAGCCATGCAGCCTCCGCCGCGATCAAACTCCTGGCTACCGGTGG
AGCGGCAGGTGTTGCATACGTGGTTTACGAAACTTCGGCTGGCGACAAAA
GTACCGACGacgtcctccgcgcctcccccctgggTCGCCCTTACGCGTGG
CTTTACGACGCAGTCTTCTCACCCTTCGTCAATCCCTCCCGCGAAAAGCT
CCTGCCCGACTGGCACAGTATTCCCAACATCCCACCGGacgcgccctgcc
ccccgacGCTCGTACTCGACCTAGAGGATACCCTGGTTCACGCGACCTGG
GACCCGAAGTACGGCTGGAGGTATGCCAAACGTCCTGGCGTGGACCGCCT
CCTGCAGGACCTGAGCAAGTACTACGAGATCGTGCTCTTCTCGCCCAGCA
ACTTCGGGGTGGTCGACCCCATCACCTGGACCCTGGATAAACAGGGCCTG
ATCATGCACCGGCTCTACAAGGACTCGACGCGCTTTCACCAGGGCAAGCA
CGTCAAGGACCTGAGTAAGTTGAACCGGGACCTGCGCAAGGTGGTGATTG
TGGACGACGACCCCGAGGCCTTCCAGTTCCAGCCCGAGAATGGGATCCGC
ATTAAGCCTTTCCGCAATgccaaggacaaggcggatCGCTCGCTCGAGAA
GCTCCGGGGCTTCCTGCTAGCCCTGGTCATGGAGGGCGTCGCCGACGACA
TCCCCGCCGTTCTCCGCCAGTTCCAAGGCCTGGACGCGGAGCAGATCGGG
GACGCCTACGCCAGTATGCTGCGACGGGCCCAAGTCCGGGAGATAGAGAA
GCAGCAGAGGGGTCTGGGCGGACTCTTGCGGTCGGGGAGGGCCTTTCAGA
GCATGGGCCACGGCTTGCCCGGGAACGCTGCCCGCTCGCCCGCGGCGCCC
ACCCGCCTCTCGGCCAAGGACATTGTGGGGGAGCCGATGGGGGAAAGCGC
ACAGCCAAACTCcaccgtggcggcggcagcggcggtgCCCGACCAGCCCC
ACCagactccccccccccgcccgggccgGTCAAGAAGGGCAAGCTCTGGC
AGCGGTACCAGGATTActtgaATGGCCAGCTGTGCGATATCGGCCTCTGC
GTCTCTATGCCGGCGTGTGTGTAAGAGACATTTTTTCAGATCGCGCTTTC
CACCACAACGATCGTTTTGTGCTGCAGAAGGGCAAGCTGGAGGGACGGGC
GCATCAAATGCGAACGCCACTGGCATTGCGATTACTTCGAGGGAAGCAAG
GCGTCAAAAGTGgttgaaagagaaagcggcgGCTCAAGAGGCGTCCGCTG
TAGGATCAAAGGCAGGCAGCTCGGAGGGTGATTCCGCGGCGATGGCTGct
ggccctgcctcctcgggCGCCGCTCCCAGCCATGCAGCCTCCGCCGCGAT
CAAACTCCTGGCTACCGGTGGAGCGGCAGGTGTTGCATACGTGGTTTACG
AAACTTCGGCTGGCGACAAAAGTACCGACGacgtcctccgcgcctccccc
ctgggTCGCCCTTACGCGTGGCTTTACGACGCAGTCTTCTCACCCTTCGT
CAATCCCTCCCGCGAAAAGCTCCTGCCCGACTGGCACAGTATTCCCAACA
TCCCACCGGacgcgccctgccccccgacGCTCGTACTCGACCTAGAGGAT
ACCCTGGTTCACGCGACCTGGGACCCGAAGTACGGCTGGAGGTATGCCAA
ACGTCCTGGCGTGGACCGCCTCCTGCAGGACCTGAGCAAGTACTACGAGA
TCGTGCTCTTCTCGCCCAGCAACTTCGGGGTGGTCGACCCCATCACCTGG
ACCCTGGATAAACAGGGCCTGATCATGCACCGGCTCTACAAGGACTCGAC
GCGCTTTCACCAGGGCAAGCACGTCAAGGACCTGAGTAAGTTGAACCGGG
ACCTGCGCAAGGTGGTGATTGTGGACGACGACCCCGAGGCCTTCCAGTTC
CAGCCCGAGAATGGGATCCGCATTAAGCCTTTCCGCAATgccaaggacaa
ggcggatCGCTCGCTCGAGAAGCTCCGGGGCTTCCTGCTAGCCCTGGTCA
TGGAGGGCGTCGCCGACGACATCCCCGCCGTTCTCCGCCAGTTCCAAGGC
CTGGACGCGGAGCAGATCGGGGACGCCTACGCCAGTATGCTGCGACGGGC
CCAAGTCCGGGAGATAGAGAAGCAGCAGAGGGGTCTGGGCGGACTCTTGC
GGTCGGGGAGGGCCTTTCAGAGCATGGGCCACGGCTTGCCCGGGAACGCT
GCCCGCTCGCCCGCGGCGCCCACCCGCCTCTCGGCCAAGGACATTGTGGG
GGAGCCGATGGGGGAAAGCGCACAGCCAAACTCcaccgtggcggcggcag
cggcggtgCCCGACCAGCCCCACCagactccccccccccgcccgggccgG
TCAAGAAGGGCAAGCTCTGGCAGCGGTACCAGGATTActtga

Synonyms

Publications