EWM27179.1, cds3444 (CDS) Nannochloropsis gaditana

Overview
NameEWM27179.1
Unique Namecds3444
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002461.1:451295..451534 +
Alignment locationCM002461.1:451683..452813 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM27179.1
Productmitochondrial import inner membrane translocase subunit tim50
Orig transcript idgnl|cribi|Naga_100010g6.6149.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002461.1supercontigCM002461.1:451295..451534 +
CM002461.1supercontigCM002461.1:451683..452813 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006810transport
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO:0005739mitochondrion
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR023214HAD-like_dom
IPR004274NIF
Homology
BLAST of EWM27179.1 vs. NCBI_GenBank
Match: gi|585109359|gb|EWM27179.1| (mitochondrial import inner membrane translocase subunit tim50 [Nannochloropsis gaditana])

HSP 1 Score: 931.013 bits (2405), Expect = 0.000e+0
Identity = 456/456 (100.00%), Postives = 456/456 (100.00%), Query Frame = 0
Query:    1 MASCAISASASLCRRVCKRHFFRSRFPPQRSFCAAEGQAGGTGASNANATGIAITSREARRQKWLKEKAAAQEASAVGSKAGSSEGDSAAMAAGPASSGAAPSHAASAAIKLLATGGAAGVAYVVYETSAGDKSTDDVLRASPLGRPYAWLYDAVFSPFVNPSREKLLPDWHSIPNIPPDAPCPPTLVLDLEDTLVHATWDPKYGWRYAKRPGVDRLLQDLSKYYEIVLFSPSNFGVVDPITWTLDKQGLIMHRLYKDSTRFHQGKHVKDLSKLNRDLRKVVIVDDDPEAFQFQPENGIRIKPFRNAKDKADRSLEKLRGFLLALVMEGVADDIPAVLRQFQGLDAEQIGDAYASMLRRAQVREIEKQQRGLGGLLRSGRAFQSMGHGLPGNAARSPAAPTRLSAKDIVGEPMGESAQPNSTVAAAAAVPDQPHQTPPPRPGRSRRASSGSGTRIT 456
            MASCAISASASLCRRVCKRHFFRSRFPPQRSFCAAEGQAGGTGASNANATGIAITSREARRQKWLKEKAAAQEASAVGSKAGSSEGDSAAMAAGPASSGAAPSHAASAAIKLLATGGAAGVAYVVYETSAGDKSTDDVLRASPLGRPYAWLYDAVFSPFVNPSREKLLPDWHSIPNIPPDAPCPPTLVLDLEDTLVHATWDPKYGWRYAKRPGVDRLLQDLSKYYEIVLFSPSNFGVVDPITWTLDKQGLIMHRLYKDSTRFHQGKHVKDLSKLNRDLRKVVIVDDDPEAFQFQPENGIRIKPFRNAKDKADRSLEKLRGFLLALVMEGVADDIPAVLRQFQGLDAEQIGDAYASMLRRAQVREIEKQQRGLGGLLRSGRAFQSMGHGLPGNAARSPAAPTRLSAKDIVGEPMGESAQPNSTVAAAAAVPDQPHQTPPPRPGRSRRASSGSGTRIT
Sbjct:    1 MASCAISASASLCRRVCKRHFFRSRFPPQRSFCAAEGQAGGTGASNANATGIAITSREARRQKWLKEKAAAQEASAVGSKAGSSEGDSAAMAAGPASSGAAPSHAASAAIKLLATGGAAGVAYVVYETSAGDKSTDDVLRASPLGRPYAWLYDAVFSPFVNPSREKLLPDWHSIPNIPPDAPCPPTLVLDLEDTLVHATWDPKYGWRYAKRPGVDRLLQDLSKYYEIVLFSPSNFGVVDPITWTLDKQGLIMHRLYKDSTRFHQGKHVKDLSKLNRDLRKVVIVDDDPEAFQFQPENGIRIKPFRNAKDKADRSLEKLRGFLLALVMEGVADDIPAVLRQFQGLDAEQIGDAYASMLRRAQVREIEKQQRGLGGLLRSGRAFQSMGHGLPGNAARSPAAPTRLSAKDIVGEPMGESAQPNSTVAAAAAVPDQPHQTPPPRPGRSRRASSGSGTRIT 456          
BLAST of EWM27179.1 vs. NCBI_GenBank
Match: gi|553190830|ref|XP_005855272.1| (translocase of inner mitochondrial membrane 50-like protein [Nannochloropsis gaditana CCMP526] >gi|422293797|gb|EKU21097.1| translocase of inner mitochondrial membrane 50-like protein [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 813.527 bits (2100), Expect = 0.000e+0
Identity = 400/401 (99.75%), Postives = 400/401 (99.75%), Query Frame = 0
Query:   56 SREARRQKWLKEKAAAQEASAVGSKAGSSEGDSAAMAAGPASSGAAPSHAASAAIKLLATGGAAGVAYVVYETSAGDKSTDDVLRASPLGRPYAWLYDAVFSPFVNPSREKLLPDWHSIPNIPPDAPCPPTLVLDLEDTLVHATWDPKYGWRYAKRPGVDRLLQDLSKYYEIVLFSPSNFGVVDPITWTLDKQGLIMHRLYKDSTRFHQGKHVKDLSKLNRDLRKVVIVDDDPEAFQFQPENGIRIKPFRNAKDKADRSLEKLRGFLLALVMEGVADDIPAVLRQFQGLDAEQIGDAYASMLRRAQVREIEKQQRGLGGLLRSGRAFQSMGHGLPGNAARSPAAPTRLSAKDIVGEPMGESAQPNSTVAAAAAVPDQPHQTPPPRPGRSRRASSGSGTRIT 456
            S EARRQKWLKEKAAAQEASAVGSKAGSSEGDSAAMAAGPASSGAAPSHAASAAIKLLATGGAAGVAYVVYETSAGDKSTDDVLRASPLGRPYAWLYDAVFSPFVNPSREKLLPDWHSIPNIPPDAPCPPTLVLDLEDTLVHATWDPKYGWRYAKRPGVDRLLQDLSKYYEIVLFSPSNFGVVDPITWTLDKQGLIMHRLYKDSTRFHQGKHVKDLSKLNRDLRKVVIVDDDPEAFQFQPENGIRIKPFRNAKDKADRSLEKLRGFLLALVMEGVADDIPAVLRQFQGLDAEQIGDAYASMLRRAQVREIEKQQRGLGGLLRSGRAFQSMGHGLPGNAARSPAAPTRLSAKDIVGEPMGESAQPNSTVAAAAAVPDQPHQTPPPRPGRSRRASSGSGTRIT
Sbjct:    2 SLEARRQKWLKEKAAAQEASAVGSKAGSSEGDSAAMAAGPASSGAAPSHAASAAIKLLATGGAAGVAYVVYETSAGDKSTDDVLRASPLGRPYAWLYDAVFSPFVNPSREKLLPDWHSIPNIPPDAPCPPTLVLDLEDTLVHATWDPKYGWRYAKRPGVDRLLQDLSKYYEIVLFSPSNFGVVDPITWTLDKQGLIMHRLYKDSTRFHQGKHVKDLSKLNRDLRKVVIVDDDPEAFQFQPENGIRIKPFRNAKDKADRSLEKLRGFLLALVMEGVADDIPAVLRQFQGLDAEQIGDAYASMLRRAQVREIEKQQRGLGGLLRSGRAFQSMGHGLPGNAARSPAAPTRLSAKDIVGEPMGESAQPNSTVAAAAAVPDQPHQTPPPRPGRSRRASSGSGTRIT 402          
BLAST of EWM27179.1 vs. NCBI_GenBank
Match: gi|219110763|ref|XP_002177133.1| (predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1] >gi|217411668|gb|EEC51596.1| predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 250.751 bits (639), Expect = 6.719e-78
Identity = 113/220 (51.36%), Postives = 159/220 (72.27%), Query Frame = 0
Query:  158 PFVNPSREKLLPDWHSIPNIPPDAPCPPTLVLDLEDTLVHATWDPKYGWRYAKRPGVDRLLQDLSKYYEIVLFSPSNFGVVDPITWTLDKQGLIMHRLYKDSTRFHQGKHVKDLSKLNRDLRKVVIVDDDPEAFQFQPENGIRIKPFRNAKDKADRSLEKLRGFLLALVMEGVADDIPAVLRQFQGLDAEQIGDAYASMLRRAQVREIEKQQRGLGGLLR 377
            P   P+ EKLLPDW  +PN+P D P P TLVLDLE+TLV +TWD +YGWR+AKRPGVD+ L++L++YYEIVL+SPS  G+ DP+  +LDK G IMHRLY+++T +  G HVKDL++LNR L ++V++DDDP   QF PEN IR+KP+ +  D+ D +LE++  FL+ +  EG  +D+P +LRQ++G+DA+QI D     +   +     + Q+GLG L R
Sbjct:    1 PLAKPAHEKLLPDWSQLPNVPQDIPVPHTLVLDLENTLVSSTWDRRYGWRHAKRPGVDKFLRELAQYYEIVLYSPSIDGIADPVVTSLDKDGCIMHRLYREATYYTGGVHVKDLNRLNRPLNRMVVIDDDPSEVQFNPENLIRVKPYADPTDRTDNTLERILPFLVEIAREGY-NDVPGLLRQYEGMDADQIADEQDRRIHELRTHRERRSQQGLGALAR 219          
BLAST of EWM27179.1 vs. NCBI_GenBank
Match: gi|676384527|ref|XP_009035542.1| (hypothetical protein AURANDRAFT_24304, partial [Aureococcus anophagefferens] >gi|323453607|gb|EGB09478.1| hypothetical protein AURANDRAFT_24304, partial [Aureococcus anophagefferens])

HSP 1 Score: 255.758 bits (652), Expect = 4.368e-77
Identity = 151/335 (45.07%), Postives = 195/335 (58.21%), Query Frame = 0
Query:   78 GSKAGSSEGDSAAMAAGPASSGAAPSHAASAAIKLLATGGAAGVAYVVYETSAGDKSTDDVLRASPLGRPYAWLYDAVFSPFVNPSREKLLPDWH-SIPNIPPDAPCPPTLVLDLEDTLVHATWDPKYGWRYAKRPGVDRLLQDLSKYYEIVLFSPSNFGVVDPITWTLDKQGLIMHRLYKDSTRFHQGKHVKDLSKLNRDLRKVVIVDDDPEAFQFQPENGIRIKPFRNAKDKADRSLEKLRGFLLALVMEGVADDIPAVLRQFQGLDAEQIGDAYASMLRRAQVREIEKQQRGLGGLLRSGRAFQSMGHGLPGNAARSPAAPTRLSAKDIVGE 411
            G   G   G +AA+ A  A+S A  S        L+A    + +A     ++ G     +V  AS               PFV PSREKLLPDW     NI PD PCP TLVLDL+DTLV ATWD +YGWR+AKRPG ++ L++++KYYEIV+F+ +  GV DP+   LDK G  MHRLY+D+T F +G H KDLSKLNRD+RK+V+VD D  A Q QP N I +KP+ +A D+ D  LE L  FL ALV E V  D+PA L +F   DA  +   Y  ML+ A+ +    ++ GLGG +R GRA Q     L    A +  +   LSAKDI G+
Sbjct:   51 GQATGEETGTTAALWASVAASTAVIS---GGIYSLMADPEESALAKAAQSSALGGWVVANVSEAS--------------KPFVQPSREKLLPDWPPDYLNISPDVPCPHTLVLDLDDTLVRATWDRRYGWRHAKRPGAEQFLREMAKYYEIVIFTTNIAGVADPVVHALDKDGCAMHRLYRDATMFVRGTHCKDLSKLNRDVRKIVVVDKDRAAVQLQPGNAIIVKPYTDATDRLDTELEDLTPFLAALVNENVR-DVPAALAKFSSNDATVVAAEYGDMLKEAKNKTDAVRKIGLGGFVR-GRARQPEPD-LALEPAGTMLSAAGLSAKDIAGD 365          
BLAST of EWM27179.1 vs. NCBI_GenBank
Match: gi|1210524962|dbj|GAX16154.1| (hypothetical protein FisN_3Hh365 [Fistulifera solaris])

HSP 1 Score: 247.284 bits (630), Expect = 5.684e-74
Identity = 119/258 (46.12%), Postives = 169/258 (65.50%), Query Frame = 0
Query:  156 FSPFVNPSREKLLPDWHSIPNIPPDAPCPPTLVLDLEDTLVHATWDPKYGWRYAKRPGVDRLLQDLSKYYEIVLFSPSNFGVVDPITWTLDKQGLIMHRLYKDSTRFHQGKHVKDLSKLNRDLRKVVIVDDDPEAFQFQPENGIRIKPFRNAKDKADRSLEKLRGFLLALVMEGVADDIPAVLRQFQGLDAEQIGDAYASMLRRAQVREIEKQQRGLGGLLRSGRAFQSMGHGLPGNAARSPAA--PTRLSAKDIVGE 411
            F     P  +KLLPDW  +PN+P D P P TLV+DL++TLV +TWD KYG+R+AKRPGVD+ L+ ++ YYEIVLFSPS  G+ DP+  +LDK+G IMHRLY+D+T +  G ++KDL +LNR++ ++V++DDDPE  QF P N I IKP+ +  D+ D +LE++  FL+ +  E    DIP +LRQ+ G+D++QI D     +   +   +++  RGLGGL       Q     LP  A  S     P +L+AKDI G+
Sbjct:  108 FEEMAVPQYDKLLPDWSQMPNVPHDIPVPHTLVIDLDNTLVSSTWDRKYGYRHAKRPGVDQFLRTMAMYYEIVLFSPSIDGMADPVVTSLDKEGCIMHRLYRDATVYKNGVYIKDLDRLNRNVNRIVVLDDDPEEVQFHPYNVIPIKPYTDPSDRTDNALERITPFLIEIARENYG-DIPTLLRQYHGMDSDQIADEIERRINLIRYDRLQQSSRGLGGLAPRN---QLPAPELPAEAVSSTTVTRPVQLTAKDIAGK 361          
BLAST of EWM27179.1 vs. NCBI_GenBank
Match: gi|1210531068|dbj|GAX10169.1| (hypothetical protein FisN_3Lh365 [Fistulifera solaris])

HSP 1 Score: 247.284 bits (630), Expect = 7.232e-74
Identity = 120/260 (46.15%), Postives = 172/260 (66.15%), Query Frame = 0
Query:  156 FSPFVNPSREKLLPDWHSIPNIPPDAPCPPTLVLDLEDTLVHATWDPKYGWRYAKRPGVDRLLQDLSKYYEIVLFSPSNFGVVDPITWTLDKQGLIMHRLYKDSTRFHQGKHVKDLSKLNRDLRKVVIVDDDPEAFQFQPENGIRIKPFRNAKDKADRSLEKLRGFLLALVMEGVADDIPAVLRQFQGLDAEQIGDAYASMLRRAQVREIEKQQRGLGGLL-RSGRAFQSMGHGLPGNAARSPAAPTR---LSAKDIVGE 411
            F     P  +KLLPDW  +PN+P D P P TLV+DL++TLV +TWD KYG+R+AKRPGVD+ L+ ++ YYEIVLFSPS  G+ DP+  +LDK+G IMHRLY+D+T +  G ++KDL +LNR++ ++V++DDDPE  QF P N I IKP+ +  D+ D +LE++  FL+ +  E    DIP +LRQ+ G+D++QI D     +   +   +++  RGLGGL+ R+          LP +A  S    TR   L+AKDI G+
Sbjct:  111 FEEMAVPQYDKLLPDWSQMPNVPHDIPVPHTLVIDLDNTLVSSTWDRKYGYRHAKRPGVDQFLRTMAMYYEIVLFSPSIDGMADPVVTSLDKEGCIMHRLYRDATVYKNGVYIKDLDRLNRNVNRIVVLDDDPEEVQFHPYNVIPIKPYTDPSDRTDNALERITPFLIEIARENYG-DIPTLLRQYHGMDSDQIADEIERRINLIRYDRLQQSSRGLGGLVPRNALP----APELPADAVSSTITTTRPVQLTAKDIAGK 365          
BLAST of EWM27179.1 vs. NCBI_GenBank
Match: gi|570966641|gb|ETP29760.1| (mitochondrial import inner membrane translocase subunit TIM50 [Phytophthora parasitica P10297])

HSP 1 Score: 225.328 bits (573), Expect = 1.058e-65
Identity = 138/354 (38.98%), Postives = 194/354 (54.80%), Query Frame = 0
Query:   69 AAAQEASAVGSKAGSS--------EGDSAAMAAGPASSGAAPSHA--------ASAAIKLLATGGAAGVAYVVYETSAGDKSTDDVLRASPLGRPYAWLYDAV---FSPFVNPSREKLLPDWHSIPNIPPDAPCPPTLVLDLEDTLVHATWDPKYGWRYAKRPGVDRLLQDLSKYYEIVLFSPSNFGVVDPITWTLDKQGLIMHRLYKDSTRFHQGKHVKDLSKLNRDLRKVVIVDDDPEAFQFQPENGIRIKPFRNAKDKADRSLEKLRGFLLALVMEGVADDIPAVLRQFQGLD--AEQIGDAYASMLRRAQVREIEKQQRGLGGLLRSGRAFQSMGHGLPGNAARSPAAPT 401
            ++  EAS+V +K G              AA  A   S+ AA  H         A  +  LLA   +  + +      +  KS  + L A+ LG  Y  +   V     PF +PSR+KLLPDW  IP +P D P  P LVLDLEDTLVH+ W  K+GWR+AKRPGVD  L+ L +YYEIV+FS  N+G  + I   LD +   +H L +D+TR+  G HVKDLS LNRDL++VVI+DDDP A+Q QPEN I +KPF N +D+ D  L+ L  FL AL  E V  D   V+ +F+  D     +   Y + + + ++++ +++++G GG +R             G  +  PA+PT
Sbjct:   36 SSVSEASSVFAKVGRDIPLKVVPRAERQAARKAAKHSADAATGHKVVRTSSLPARISFALLAGSISGSIVWNFVLDDSIKKSIKETLGATFLGDIYVVIAKKVEETVKPFTDPSRQKLLPDW-PIPQVPADTPPVPVLVLDLEDTLVHSEWSRKHGWRHAKRPGVDEFLETLCQYYEIVIFS-QNYGA-EEIVQKLDPKQCALHVLSRDATRYLNGAHVKDLSNLNRDLKQVVILDDDPAAYQLQPENAIPVKPFTNGRDRDDHELKDLIPFLKALASERVP-DFRQVIGEFRDEDGVVRDLATKYGARVHQLEMQKEQQKKKGFGGFVR-------------GRMSHHPASPT 372          
BLAST of EWM27179.1 vs. NCBI_GenBank
Match: gi|568004483|gb|ETL78807.1| (mitochondrial import inner membrane translocase subunit TIM50 [Phytophthora parasitica])

HSP 1 Score: 224.942 bits (572), Expect = 1.441e-65
Identity = 138/354 (38.98%), Postives = 194/354 (54.80%), Query Frame = 0
Query:   69 AAAQEASAVGSKAGSS--------EGDSAAMAAGPASSGAAPSHA--------ASAAIKLLATGGAAGVAYVVYETSAGDKSTDDVLRASPLGRPYAWLYDAV---FSPFVNPSREKLLPDWHSIPNIPPDAPCPPTLVLDLEDTLVHATWDPKYGWRYAKRPGVDRLLQDLSKYYEIVLFSPSNFGVVDPITWTLDKQGLIMHRLYKDSTRFHQGKHVKDLSKLNRDLRKVVIVDDDPEAFQFQPENGIRIKPFRNAKDKADRSLEKLRGFLLALVMEGVADDIPAVLRQFQGLD--AEQIGDAYASMLRRAQVREIEKQQRGLGGLLRSGRAFQSMGHGLPGNAARSPAAPT 401
            ++  EAS+V +K G              AA  A   S+ AA  H         A  +  LLA   +  + +      +  KS  + L A+ LG  Y  +   V     PF +PSR+KLLPDW  IP +P D P  P LVLDLEDTLVH+ W  K+GWR+AKRPGVD  L+ L +YYEIV+FS  N+G  + I   LD +   +H L +D+TR+  G HVKDLS LNRDL++VVI+DDDP A+Q QPEN I +KPF N +D+ D  L+ L  FL AL  E V  D   V+ +F+  D     +   Y + + + ++++ +++++G GG +R             G  +  PA+PT
Sbjct:   36 SSVSEASSVFAKVGRDIPLKVVPRVERQAARKAAKHSADAATGHKVVRTSSLPARISFALLAGSISGSIVWNFVLDDSIKKSIKETLGATFLGDIYVVIAKKVEETVKPFTDPSRQKLLPDW-PIPQVPADTPPVPVLVLDLEDTLVHSEWSRKHGWRHAKRPGVDEFLETLCQYYEIVIFS-QNYGA-EEIVQKLDPKQCALHVLSRDATRYLNGAHVKDLSNLNRDLKQVVILDDDPAAYQLQPENAIPVKPFTNGRDRDDHELKDLIPFLKALASERVP-DFRQVIGEFRDEDGVVRDLATKYGARVHQLEMQKEQQKKKGFGGFVR-------------GRMSHHPASPT 372          
BLAST of EWM27179.1 vs. NCBI_GenBank
Match: gi|675212181|ref|XP_008914975.1| (mitochondrial import inner membrane translocase subunit TIM50 [Phytophthora parasitica INRA-310] >gi|568084812|gb|ETM99733.1| mitochondrial import inner membrane translocase subunit TIM50 [Phytophthora parasitica INRA-310])

HSP 1 Score: 223.402 bits (568), Expect = 4.651e-65
Identity = 125/301 (41.53%), Postives = 176/301 (58.47%), Query Frame = 0
Query:  106 ASAAIKLLATGGAAGVAYVVYETSAGDKSTDDVLRASPLGRPYAWLYDAV---FSPFVNPSREKLLPDWHSIPNIPPDAPCPPTLVLDLEDTLVHATWDPKYGWRYAKRPGVDRLLQDLSKYYEIVLFSPSNFGVVDPITWTLDKQGLIMHRLYKDSTRFHQGKHVKDLSKLNRDLRKVVIVDDDPEAFQFQPENGIRIKPFRNAKDKADRSLEKLRGFLLALVMEGVADDIPAVLRQFQGLD--AEQIGDAYASMLRRAQVREIEKQQRGLGGLLRSGRAFQSMGHGLPGNAARSPAAPT 401
            A  +  LLA   +  + +      +  KS  + L A+ LG  Y  +   V     PF +PSR+KLLPDW  IP +P D P  P LVLDLEDTLVH+ W  K+GWR+AKRPGVD  L+ L +YYEIV+FS  N+G  + I   LD +   +H L +D+TR+  G HVKDLS LNRDL++VVI+DDDP A+Q QPEN I +KPF N +D+ D  L+ L  FL AL  E V  D   V+ +F+  D     +   Y + + + ++++ +++++G GG +R             G  +  PA+PT
Sbjct:   89 ARISFALLAGSISGSIVWNFVLDDSIKKSIKETLGATFLGDIYVVIAKKVEETVKPFTDPSRQKLLPDW-PIPQVPADTPPVPVLVLDLEDTLVHSEWSRKHGWRHAKRPGVDEFLETLCQYYEIVIFS-QNYGA-EEIVQKLDPKQCALHVLSRDATRYLNGAHVKDLSNLNRDLKQVVILDDDPAAYQLQPENAIPVKPFTNGRDRDDHELKNLIPFLKALASERVP-DFRQVIGEFRDEDGVVRDLATKYGARVHQLEMQKEQQKKKGFGGFVR-------------GRMSHHPASPT 372          
BLAST of EWM27179.1 vs. NCBI_GenBank
Match: gi|566008876|gb|ETI31787.1| (mitochondrial import inner membrane translocase subunit TIM50 [Phytophthora parasitica P1569] >gi|567975017|gb|ETL25589.1| mitochondrial import inner membrane translocase subunit TIM50 [Phytophthora parasitica] >gi|568034402|gb|ETM32073.1| mitochondrial import inner membrane translocase subunit TIM50 [Phytophthora parasitica] >gi|570312558|gb|ETO60506.1| mitochondrial import inner membrane translocase subunit TIM50 [Phytophthora parasitica P1976] >gi|570936314|gb|ETP01571.1| mitochondrial import inner membrane translocase subunit TIM50 [Phytophthora parasitica CJ01A1])

HSP 1 Score: 223.402 bits (568), Expect = 4.651e-65
Identity = 125/301 (41.53%), Postives = 176/301 (58.47%), Query Frame = 0
Query:  106 ASAAIKLLATGGAAGVAYVVYETSAGDKSTDDVLRASPLGRPYAWLYDAV---FSPFVNPSREKLLPDWHSIPNIPPDAPCPPTLVLDLEDTLVHATWDPKYGWRYAKRPGVDRLLQDLSKYYEIVLFSPSNFGVVDPITWTLDKQGLIMHRLYKDSTRFHQGKHVKDLSKLNRDLRKVVIVDDDPEAFQFQPENGIRIKPFRNAKDKADRSLEKLRGFLLALVMEGVADDIPAVLRQFQGLD--AEQIGDAYASMLRRAQVREIEKQQRGLGGLLRSGRAFQSMGHGLPGNAARSPAAPT 401
            A  +  LLA   +  + +      +  KS  + L A+ LG  Y  +   V     PF +PSR+KLLPDW  IP +P D P  P LVLDLEDTLVH+ W  K+GWR+AKRPGVD  L+ L +YYEIV+FS  N+G  + I   LD +   +H L +D+TR+  G HVKDLS LNRDL++VVI+DDDP A+Q QPEN I +KPF N +D+ D  L+ L  FL AL  E V  D   V+ +F+  D     +   Y + + + ++++ +++++G GG +R             G  +  PA+PT
Sbjct:   89 ARISFALLAGSISGSIVWNFVLDDSIKKSIKETLGATFLGDIYVVIAKKVEETVKPFTDPSRQKLLPDW-PIPQVPADTPPVPVLVLDLEDTLVHSEWSRKHGWRHAKRPGVDEFLETLCQYYEIVIFS-QNYGA-EEIVQKLDPKQCALHVLSRDATRYLNGAHVKDLSNLNRDLKQVVILDDDPAAYQLQPENAIPVKPFTNGRDRDDHELKDLIPFLKALASERVP-DFRQVIGEFRDEDGVVRDLATKYGARVHQLEMQKEQQKKKGFGGFVR-------------GRMSHHPASPT 372          
The following BLAST results are available for this feature:
BLAST of EWM27179.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585109359|gb|EWM27179.1|0.000e+0100.00mitochondrial import inner membrane translocase su... [more]
gi|553190830|ref|XP_005855272.1|0.000e+099.75translocase of inner mitochondrial membrane 50-lik... [more]
gi|219110763|ref|XP_002177133.1|6.719e-7851.36predicted protein, partial [Phaeodactylum tricornu... [more]
gi|676384527|ref|XP_009035542.1|4.368e-7745.07hypothetical protein AURANDRAFT_24304, partial [Au... [more]
gi|1210524962|dbj|GAX16154.1|5.684e-7446.12hypothetical protein FisN_3Hh365 [Fistulifera sola... [more]
gi|1210531068|dbj|GAX10169.1|7.232e-7446.15hypothetical protein FisN_3Lh365 [Fistulifera sola... [more]
gi|570966641|gb|ETP29760.1|1.058e-6538.98mitochondrial import inner membrane translocase su... [more]
gi|568004483|gb|ETL78807.1|1.441e-6538.98mitochondrial import inner membrane translocase su... [more]
gi|675212181|ref|XP_008914975.1|4.651e-6541.53mitochondrial import inner membrane translocase su... [more]
gi|566008876|gb|ETI31787.1|4.651e-6541.53mitochondrial import inner membrane translocase su... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna3453rna3453Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications