rna3450, rna3450 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna3450
Unique Name	rna3450
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2583
Alignment location	CM002461.1:444115..446432 -

Link to JBrowse

Properties


Property Name	Value
Product	pre-rrna-processing protein tsr1
Orig transcript id	gnl\|cribi\|Naga_100010g3.6179.mrna
Orig protein id	gnl\|cribi\|Naga_100010g3.6179
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002461.1	supercontig	CM002461.1:444115..446432 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100010g3	gene3324	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM27209.1	cds3441	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna3450	rna3450-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002461.1:444115..446432-
coding sequence from alignment at CM002461.1:444115..446432-

mRNA sequence

>rna3450 ID=rna3450|Name=rna3450|organism=Nannochloropsis gaditana|type=mRNA|length=2583bp
AGTCTGCAAAACGGTCGGGTCAATCGCTTCCATCACTTAGCTTTGCCGGC
GCCCGTCGCCTACCTCGCTCCTTGCACAATGAATGTCTCATCAGCACTCA
TGTGAAGTGACGTCTGTGTACACCATGCGCATACCTTTGTGCCCGTCACG
TACTTGTAAGGTCATTTTGCTGCCGGATGTGTGCTCTTCTCACTTCACCC
CACAAATGCCTCTCCCACCCAGGCCCTTAGGAGTCATGACGCTGGGGTCT
GTCACCCCGCGACTGTGGGCAAGTGCTTTCACCATTGGTCTATCGTCACT
TCTGTTTGGTTACAGCCTGGCATGCTTGAATACGGTGATCACTTGCTCCT
CTACGCCTTGCCCAAAGGGCTCAATCCTTACAAACCTGAATCTAAGTCTG
GAGGAGCAGCAATTGGCCACTGCCATGACAATTATTGGCGCGATGCTGGG
AGGGCTTTTCGCTTCCTATCCAAATGATCACTTTGGCCGGCGCAAATCCC
TTCTGTTCAACAACATTTTTTTCCTGATAGGCGGCGTGCTCACGGCAATA
GCCTCCCTGGACTCCATCCTCGTCGGCCGCTTCTTGCTCGGACTGGGCAC
AGGGGTCGAGTCGATGGTGGCGCCTGTTTTGCTATCTGAAATTGCATCGA
ACGAAACTCGAGGAGCTATCACGAGCTTGCATCAGCTTAACATCACGCTG
GGCATTCTAATTAGCAATTTGATCGGCTACGGCTTTGTTCCCAACGTGGA
CGGAGGCTGGCGGTATGTCCAGCTCTTTGTCGTCTTGCCTGCAGCGCTGC
AAGTGCTTCTTTTCTGGTTGGTTCCCGAGTCCCCCCGCTGGTTACTCCGG
GCTGACCGTAGAGAAGATGCCAGGAGTGTTTTAAGCCATCTTCGGATATG
CAAGAAGGGCGACGCGGCGGCTCAGGCAGCCGGAGCGGAACTCGTTGAGG
CTGAGCTTGTTGCCTTGGAGCAGGAGTTGGGATCCAGCATGAAGCAACCC
ACAGCCGGCTGGAAAGAGACTTTTTCTTACGGTAAAGCGATGCGGATCGG
AATGTTGATGATGTTTTTTAGCGCCATGACAGGCATCAACACGGTTATTT
TCTACTCCACCACCATTTTCGCGTTGGCGGGAGTGGAAAATGCCTTTTTG
GGCACCGTGCTGGTGGGTATTTTGAATGTCATCATAACGATGGTGTCGGG
CTACCTTGTAGACAAGGCGGGGCGGAAAGTCCTCTTGACGGGCGGGACCT
GGATCATGCTCGTCAGCCTCCTTCTTTTGGGCAGCATCCTGCTGGCGGAT
GGCGTGCCCCCAGTCGCGATCTCGATTGTGGCCGTCGGATCTATGCTCCT
CTACGTATTTGGCTTCGCCATCGGTATCGGAGCTGTGCAGTGGGTGGTAG
TGGGCGAGGTGGTTCCCACCAAGATCCGATCCAAAGCGTACTCGATCTTT
GTCACTAGCAACTGGACCGCAAATCTTGTCATCTCCCTCGTTACGCTTTC
CCTCATCGACGCCCTGGGTAAGTCCCTGGCCTCCGCCGGGTCTTCCGTTG
AGAAACAGGAGCAGTTGGGTGTGGCTCTTTTGTACATGTGTTTCGCGGGA
ATGTGTGTCTTGTGCTTGCTCTTTCTCTACTTCCTGGTGCCGGAGACGAA
GCATCAGCACGAGGAGAAGGCTGCTCACCACCATCGTCGCGTCTCCTCCG
AGTTCGCAGTGGCTGATGTTGATATCATCACCGAGGTGGTGCACTGCGTG
GAGGCTCACGGAGAGGGCCCAGTCGACGCTCCGGCCGACGCGGCGGGCAA
GCAGCCGGTGTCAATGGTGTAGAGAAGAGAGGCAGGAACAGCGACACAAG
ATACAAGAAAGGACTAGAGCACGGGCAATTAAAGTACTTGTAAGACTGCA
ATCATCTAGGGGTGAAGTGAGTCGTAAGGAGACAGACAATGCGAAGTAAC
AGGATACCGACGCTGAAGATGATGCCGAAGGCGGTGCTCTGAAAGCCTCT
GTAACAGCAATAGCTGGAGCAATAGAACGTGTGGAATGAGAGTAGAAATG
CATGATGGGTCAGACAGGGCGTCAGTCCAGGTAGAAACGAAAAAAAAATC
CTGGAACACTTTGGTAAAGGGTCATAAGGAATTGTGAAAAAGGGGAAGGA
TATCATGGCCTAAAGCTTCGACTCGGATAAAGCTTGATGGACAAATATAT
GCATGAATGGAGCAATAGCAGGCAAGTCGCCTTGGGACGGCACTGTTTCA
CTGCCATTGGGGCGCAGTGTGGAAGCGTCGGAAGGGTTCGAGGGGGCACA
TGGGGGGGAAAGATGCATGCTTATGGGGGAGTCCATGCGAGTAACGCCTG
TGGAGAAGTGTTGTTCTGCGGTCATTGTAATAGAAGGGATGTGTGATTGC
TGTGGTGCGGCACTGGCGACCTCCCGTTGTGACAGCAGCAAAACGGGCGA
AGGACTGCCGCAATGGGGACGAAAGACATCAAATTGGAAGACATTTGCGG
GGCATCGAAGAGTCTTTGCAGTCGACATTGATGACGAGCATTCTTTCACC
CTATGTATACTATGTTCATGCATGCCCTCCTCC

protein sequence of rna3450

>rna3450-protein ID=rna3450-protein|Name=rna3450|organism=Nannochloropsis gaditana|type=polypeptide|length=465bp
MSEYQASWFEGEEEEGQNDEGGEEEEGEEEEGEEEEGEEEGEEEEDPSLS
IGSEQQRQGRQVRQLEKDELEFPDEVQTPDDRPAKERFARYRALKSLRTS
PWDPNESLPREYARIFKFSSFAASLARVTSEMEEREKAQNRHLLATLLPP
PASSATKKKDGEDDSGMEVEDEKSSDKFSEGFVPAGSYVTLELGGVPAEV
GKRAQRLQAKESPLTVFSLLRYENKVSVLHFNILRHPACSTPVKSKDRLV
FYTGFRSFEARPVFSEHNLNCDKHKFSRFLHGGRFAVATVFGPVSMPPCP
VLVFRKSSPDEMGEEGKTATTPSRTGGSGSFLPATAGVVEPKSHTRDLTL
VATGTLHTVDPDRIILKRILLTGYPIRVKRRSAVVKHMFYNPEDVKWFKP
AELSTKLGAAGHIREPVGTHGLMKVRFNRIIQQSDTVCLPLFKRVFPKLL
PEEIEEDGAHAAHFP

mRNA from alignment at CM002461.1:444115..446432-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna3450 ID=rna3450|Name=rna3450|organism=Nannochloropsis gaditana|type=mRNA|length=2318bp|location=Sequence derived from alignment at CM002461.1:444115..446432- (Nannochloropsis gaditana)
TATGTGCGTGGGAAGCCTCTGGGCGTCAATCAACTTGTGCATGTCCCGGG
TTTGGGCACCTACGCCATGGATCGTATCCTCAGTAGCCGGGGGGAAGAGC
CTTGCCCCTTGCGAGGCGCATCCTCGTCCTCGTCACACATGCAAGTCGCG
CTTTCTATGGAGGGTGCTGGAAGCCATCAAGAGGAGGTTATGGCGGTGGC
AGCGCCAGGACCGGCGCGGGAGGAATCTTTGAAGATGTGGGCGGACGTGG
ACGAACTTGCAGGCGAGCAGACCTGGCCTATGGCGGAAGAAGGGGGGGGG
AGAGTGGCCTGACGACAATGAGGAGGGGGGGGAGAAGAAGAAGAAGGCTG
CGAAGGAGAAGCTGTTGAAAAACATGTCGGAGTATCAGGCGTCCTGGTTC
GAGGGGGAGGAGGAGGAAGGGCAAAATGACGAGGGTGGGGAGGAAGAGGA
GGGGGAGGAGGAGGAGGGGGAGGAGGAGGAGGGGGAGGAGGAGGGGGAGG
AGGAGGAGGACCCGAGCCTATCGATAGGAAGTGAACAGCAGCGACAGGGG
CGACAAGTGAGGCAGCTTGAGAAGGACGAGCTTGAGTTTCCCGATGAAGT
GCAGACTCCGGACGATCGGCCCGCCAAGGAGCGTTTCGCGCGCTACCGAG
CTCTTAAGAGCCTGCGCACCAGCCCCTGGGATCCCAACGAATCCCTGCCT
CGCGAGTACGCTCGGATATTCAAATTTTCGAGTTTCGCGGCCTCTCTTGC
GCGAGTGACGAGCGAGATGGAGGAGAGAGAAAAGGCGCAGAATCGGCACC
TGCTGGCGACCTTGTTGCCCCCACCCGCGTCGAGCGCGACGAAGAAAAAA
GATGGGGAAGACGACAGTGGGATGGAGGTGGAGGATGAGAAGAGCAGCGA
CAAGTTCTCGGAGGGATTTGTGCCGGCGGGCTCCTACGTCACGTTGGAGC
TCGGGGGTGTCCCTGCAGAGGTGGGAAAGCGAGCGCAGCGATTGCAAGCA
AAGGAGTCGCCGTTGACGGTCTTCTCGTTGCTGCGTTACGAGAACAAAGT
AAGCGTCTTGCACTTCAACATCCTCAGGCACCCGGCTTGCTCGACTCCCG
TTAAGAGCAAAGACCGGCTCGTGTTCTACACCGGCTTCCGCTCCTTCGAG
GCCCGCCCCGTCTTTTCGGAGCACAACCTCAATTGCGATAAACATAAATT
TTCTCGCTTCCTACACGGGGGTCGTTTCGCCGTGGCCACCGTCTTCGGGC
CCGTCAGTATGCCCCCTTGCCCTGTCCTCGTGTTTCGCAAGTCGTCGCCT
GACGAGATGGGAGAGGAAGGCAAGACAGCCACGACGCCGTCCAGGACGGG
AGGAAGCGGCTCTTTTCTGCCTGCCACAGCCGGGGTGGTGGAGCCAAAAT
CACACACGCGCGACCTGACCTTGGTTGCCACAGGTACTCTACACACTGTT
GATCCGGACCGCATCATTTTGAAGCGCATTTTGCTGACGGGTTACCCCAT
ACGAGTCAAACGGCGCTCGGCGGTCGTCAAGCACATGTTTTACAATCCCG
AGGACGTGAAGTGGTTCAAACCCGCGGAGTTGTCTACCAAGCTCGGTGCG
GCGGGGCACATACGGGAACCAGTCGGCACGCATGGTCTGATGAAAGTGCG
ATTCAACCGAATTATCCAGCAAAGCGACACAGTATGTCTGCCTTTATTCA
AACGGGTTTTCCCCAAATTGTTGCCTGAGGAAATCGAAGAGGATGGTGCC
CATGCGGCGCACTTTCCTTAAGATGATATACATTGGAAGGCGTCAACATT
ATTCGGAGGTCAAGGAAGTAAAAAATATTCGTGGAAGAAAAAGGCATGTA
TAGTATCCTGCGCAACGCGATGACCACATTTATAAGTTTGCAGGTCACGA
TAACCACATTTGTAAGTTTGCAGGTACGCCGCAAGGGAGATCCCCGCTCT
CATAGTCTAGTGGTTTATGACTCTGCACTTTGAATGCAGCAACCTGGGTT
AGCGACTGATCGGATCTGATGACCAGGTACCCGACACGAGCCCCGTTCGA
ATCCCGGTGAGAGCTTTCCCTACTTTTTTTTCCCTGTCACTCTTTTTTAC
TTCATGCCTCATCATAAAGTTAGTGCTGACCATTTATTAATGTTTCTTAG
AAACATCATAAGATTGAACATCTCGAAATGAGTTGGCACGGGCATGAGAT
TCGTTTTACAGATCATAAGTGGTACGACTTGGCCCATAATTTTATTTGCT
GTCTTCAACTACAACGACGCCACAACCCCATCTTGTTGCGAGAGGAAATA
ATTTGTATTGCCCATTCG

Coding sequence (CDS) from alignment at CM002461.1:444115..446432-

>rna3450 ID=rna3450|Name=rna3450|organism=Nannochloropsis gaditana|type=CDS|length=1398bp|location=Sequence derived from alignment at CM002461.1:444115..446432- (Nannochloropsis gaditana)
ATGTCGGAGTATCAGGCGTCCTGGTTCGAGGGGGAGGAGGAGGAAGGGCA
AAATGACGAGGGTGGGGAGGAAGAGGAGGGGGAGGAGGAGGAGGGGGAGG
AGGAGGAGGGGGAGGAGGAGGGGGAGGAGGAGGAGGACCCGAGCCTATCG
ATAGGAAGTGAACAGCAGCGACAGGGGCGACAAGTGAGGCAGCTTGAGAA
GGACGAGCTTGAGTTTCCCGATGAAGTGCAGACTCCGGACGATCGGCCCG
CCAAGGAGCGTTTCGCGCGCTACCGAGCTCTTAAGAGCCTGCGCACCAGC
CCCTGGGATCCCAACGAATCCCTGCCTCGCGAGTACGCTCGGATATTCAA
ATTTTCGAGTTTCGCGGCCTCTCTTGCGCGAGTGACGAGCGAGATGGAGG
AGAGAGAAAAGGCGCAGAATCGGCACCTGCTGGCGACCTTGTTGCCCCCA
CCCGCGTCGAGCGCGACGAAGAAAAAAGATGGGGAAGACGACAGTGGGAT
GGAGGTGGAGGATGAGAAGAGCAGCGACAAGTTCTCGGAGGGATTTGTGC
CGGCGGGCTCCTACGTCACGTTGGAGCTCGGGGGTGTCCCTGCAGAGGTG
GGAAAGCGAGCGCAGCGATTGCAAGCAAAGGAGTCGCCGTTGACGGTCTT
CTCGTTGCTGCGTTACGAGAACAAAGTAAGCGTCTTGCACTTCAACATCC
TCAGGCACCCGGCTTGCTCGACTCCCGTTAAGAGCAAAGACCGGCTCGTG
TTCTACACCGGCTTCCGCTCCTTCGAGGCCCGCCCCGTCTTTTCGGAGCA
CAACCTCAATTGCGATAAACATAAATTTTCTCGCTTCCTACACGGGGGTC
GTTTCGCCGTGGCCACCGTCTTCGGGCCCGTCAGTATGCCCCCTTGCCCT
GTCCTCGTGTTTCGCAAGTCGTCGCCTGACGAGATGGGAGAGGAAGGCAA
GACAGCCACGACGCCGTCCAGGACGGGAGGAAGCGGCTCTTTTCTGCCTG
CCACAGCCGGGGTGGTGGAGCCAAAATCACACACGCGCGACCTGACCTTG
GTTGCCACAGGTACTCTACACACTGTTGATCCGGACCGCATCATTTTGAA
GCGCATTTTGCTGACGGGTTACCCCATACGAGTCAAACGGCGCTCGGCGG
TCGTCAAGCACATGTTTTACAATCCCGAGGACGTGAAGTGGTTCAAACCC
GCGGAGTTGTCTACCAAGCTCGGTGCGGCGGGGCACATACGGGAACCAGT
CGGCACGCATGGTCTGATGAAAGTGCGATTCAACCGAATTATCCAGCAAA
GCGACACAGTATGTCTGCCTTTATTCAAACGGGTTTTCCCCAAATTGTTG
CCTGAGGAAATCGAAGAGGATGGTGCCCATGCGGCGCACTTTCCTTAA

Synonyms

Publications