EWM27209.1, cds3441 (CDS) Nannochloropsis gaditana

Overview
NameEWM27209.1
Unique Namecds3441
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002461.1:444662..446059 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM27209.1
Productpre-rrna-processing protein tsr1
Orig transcript idgnl|cribi|Naga_100010g3.6179.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002461.1supercontigCM002461.1:444662..446059 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0009987cellular process
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Vocabulary: INTERPRO
TermDefinition
IPR007034BMS1_TSR1_C
Homology
BLAST of EWM27209.1 vs. NCBI_GenBank
Match: gi|585109389|gb|EWM27209.1| (pre-rrna-processing protein tsr1 [Nannochloropsis gaditana])

HSP 1 Score: 947.192 bits (2447), Expect = 0.000e+0
Identity = 465/465 (100.00%), Postives = 465/465 (100.00%), Query Frame = 0
Query:    1 MSEYQASWFEGEEEEGQNDEGGEEEEGEEEEGEEEEGEEEGEEEEDPSLSIGSEQQRQGRQVRQLEKDELEFPDEVQTPDDRPAKERFARYRALKSLRTSPWDPNESLPREYARIFKFSSFAASLARVTSEMEEREKAQNRHLLATLLPPPASSATKKKDGEDDSGMEVEDEKSSDKFSEGFVPAGSYVTLELGGVPAEVGKRAQRLQAKESPLTVFSLLRYENKVSVLHFNILRHPACSTPVKSKDRLVFYTGFRSFEARPVFSEHNLNCDKHKFSRFLHGGRFAVATVFGPVSMPPCPVLVFRKSSPDEMGEEGKTATTPSRTGGSGSFLPATAGVVEPKSHTRDLTLVATGTLHTVDPDRIILKRILLTGYPIRVKRRSAVVKHMFYNPEDVKWFKPAELSTKLGAAGHIREPVGTHGLMKVRFNRIIQQSDTVCLPLFKRVFPKLLPEEIEEDGAHAAHFP 465
            MSEYQASWFEGEEEEGQNDEGGEEEEGEEEEGEEEEGEEEGEEEEDPSLSIGSEQQRQGRQVRQLEKDELEFPDEVQTPDDRPAKERFARYRALKSLRTSPWDPNESLPREYARIFKFSSFAASLARVTSEMEEREKAQNRHLLATLLPPPASSATKKKDGEDDSGMEVEDEKSSDKFSEGFVPAGSYVTLELGGVPAEVGKRAQRLQAKESPLTVFSLLRYENKVSVLHFNILRHPACSTPVKSKDRLVFYTGFRSFEARPVFSEHNLNCDKHKFSRFLHGGRFAVATVFGPVSMPPCPVLVFRKSSPDEMGEEGKTATTPSRTGGSGSFLPATAGVVEPKSHTRDLTLVATGTLHTVDPDRIILKRILLTGYPIRVKRRSAVVKHMFYNPEDVKWFKPAELSTKLGAAGHIREPVGTHGLMKVRFNRIIQQSDTVCLPLFKRVFPKLLPEEIEEDGAHAAHFP
Sbjct:    1 MSEYQASWFEGEEEEGQNDEGGEEEEGEEEEGEEEEGEEEGEEEEDPSLSIGSEQQRQGRQVRQLEKDELEFPDEVQTPDDRPAKERFARYRALKSLRTSPWDPNESLPREYARIFKFSSFAASLARVTSEMEEREKAQNRHLLATLLPPPASSATKKKDGEDDSGMEVEDEKSSDKFSEGFVPAGSYVTLELGGVPAEVGKRAQRLQAKESPLTVFSLLRYENKVSVLHFNILRHPACSTPVKSKDRLVFYTGFRSFEARPVFSEHNLNCDKHKFSRFLHGGRFAVATVFGPVSMPPCPVLVFRKSSPDEMGEEGKTATTPSRTGGSGSFLPATAGVVEPKSHTRDLTLVATGTLHTVDPDRIILKRILLTGYPIRVKRRSAVVKHMFYNPEDVKWFKPAELSTKLGAAGHIREPVGTHGLMKVRFNRIIQQSDTVCLPLFKRVFPKLLPEEIEEDGAHAAHFP 465          
BLAST of EWM27209.1 vs. NCBI_GenBank
Match: gi|553190805|ref|XP_005855264.1| (pre-rrna-processing protein tsr1 [Nannochloropsis gaditana CCMP526] >gi|422293789|gb|EKU21089.1| pre-rrna-processing protein tsr1 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 936.791 bits (2420), Expect = 0.000e+0
Identity = 461/466 (98.93%), Postives = 461/466 (98.93%), Query Frame = 0
Query:    1 MSEYQASWFEGEEEEGQNDEGGEEEEGEEEEGEEE-EGEEEGEEEEDPSLSIGSEQQRQGRQVRQLEKDELEFPDEVQTPDDRPAKERFARYRALKSLRTSPWDPNESLPREYARIFKFSSFAASLARVTSEMEEREKAQNRHLLATLLPPPASSATKKKDGEDDSGMEVEDEKSSDKFSEGFVPAGSYVTLELGGVPAEVGKRAQRLQAKESPLTVFSLLRYENKVSVLHFNILRHPACSTPVKSKDRLVFYTGFRSFEARPVFSEHNLNCDKHKFSRFLHGGRFAVATVFGPVSMPPCPVLVFRKSSPDEMGEEGKTATTPSRTGGSGSFLPATAGVVEPKSHTRDLTLVATGTLHTVDPDRIILKRILLTGYPIRVKRRSAVVKHMFYNPEDVKWFKPAELSTKLGAAGHIREPVGTHGLMKVRFNRIIQQSDTVCLPLFKRVFPKLLPEEIEEDGAHAAHFP 465
            MSEYQASWFEGEEEEGQNDEGGEEEEGEEEEG     GEEEGEEEEDPSLSIGSEQQRQGRQVRQLEKDELEFPDEVQTPDDRPAKERFARYRALKSLRTSPWDPNESLPREYARIFKFSSFAASLARVTSEMEEREKAQNRHLLATLLPPPASSATKKKDGEDDSGMEVEDEKSSDKFSEGFVPAGSYVTLELGGVPAEVGKRAQRLQAKESPLTVFSLLRYENKVSVLHFNILRHPACSTPVKSKDRLVFYTGFRSFEARPVFSEHNLNCDKHKFSRFLHGGRFAVATVFGPVSMPPCPVLVFRKSSPDEMGEEGKTATTPSRTGGSGSFLPATAGVVEPKSHTRDLTLVATGTLHTVDPDRIILKRILLTGYPIRVKRRSAVVKHMFYNPEDVKWFKPAELSTKLGAAGHIREPVGTHGLMKVRFNRIIQQSDTVCLPLFKRVFPKLLPEEIEEDGAHAAHFP
Sbjct:  460 MSEYQASWFEGEEEEGQNDEGGEEEEGEEEEGGGGGRGEEEGEEEEDPSLSIGSEQQRQGRQVRQLEKDELEFPDEVQTPDDRPAKERFARYRALKSLRTSPWDPNESLPREYARIFKFSSFAASLARVTSEMEEREKAQNRHLLATLLPPPASSATKKKDGEDDSGMEVEDEKSSDKFSEGFVPAGSYVTLELGGVPAEVGKRAQRLQAKESPLTVFSLLRYENKVSVLHFNILRHPACSTPVKSKDRLVFYTGFRSFEARPVFSEHNLNCDKHKFSRFLHGGRFAVATVFGPVSMPPCPVLVFRKSSPDEMGEEGKTATTPSRTGGSGSFLPATAGVVEPKSHTRDLTLVATGTLHTVDPDRIILKRILLTGYPIRVKRRSAVVKHMFYNPEDVKWFKPAELSTKLGAAGHIREPVGTHGLMKVRFNRIIQQSDTVCLPLFKRVFPKLLPEEIEEDGAHAAHFP 925          
BLAST of EWM27209.1 vs. NCBI_GenBank
Match: gi|553181644|ref|XP_005853601.1| (ribosome biogenesis protein [Nannochloropsis gaditana CCMP526] >gi|422295463|gb|EKU22762.1| ribosome biogenesis protein [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 879.396 bits (2271), Expect = 0.000e+0
Identity = 430/430 (100.00%), Postives = 430/430 (100.00%), Query Frame = 0
Query:   36 EGEEEGEEEEDPSLSIGSEQQRQGRQVRQLEKDELEFPDEVQTPDDRPAKERFARYRALKSLRTSPWDPNESLPREYARIFKFSSFAASLARVTSEMEEREKAQNRHLLATLLPPPASSATKKKDGEDDSGMEVEDEKSSDKFSEGFVPAGSYVTLELGGVPAEVGKRAQRLQAKESPLTVFSLLRYENKVSVLHFNILRHPACSTPVKSKDRLVFYTGFRSFEARPVFSEHNLNCDKHKFSRFLHGGRFAVATVFGPVSMPPCPVLVFRKSSPDEMGEEGKTATTPSRTGGSGSFLPATAGVVEPKSHTRDLTLVATGTLHTVDPDRIILKRILLTGYPIRVKRRSAVVKHMFYNPEDVKWFKPAELSTKLGAAGHIREPVGTHGLMKVRFNRIIQQSDTVCLPLFKRVFPKLLPEEIEEDGAHAAHFP 465
            EGEEEGEEEEDPSLSIGSEQQRQGRQVRQLEKDELEFPDEVQTPDDRPAKERFARYRALKSLRTSPWDPNESLPREYARIFKFSSFAASLARVTSEMEEREKAQNRHLLATLLPPPASSATKKKDGEDDSGMEVEDEKSSDKFSEGFVPAGSYVTLELGGVPAEVGKRAQRLQAKESPLTVFSLLRYENKVSVLHFNILRHPACSTPVKSKDRLVFYTGFRSFEARPVFSEHNLNCDKHKFSRFLHGGRFAVATVFGPVSMPPCPVLVFRKSSPDEMGEEGKTATTPSRTGGSGSFLPATAGVVEPKSHTRDLTLVATGTLHTVDPDRIILKRILLTGYPIRVKRRSAVVKHMFYNPEDVKWFKPAELSTKLGAAGHIREPVGTHGLMKVRFNRIIQQSDTVCLPLFKRVFPKLLPEEIEEDGAHAAHFP
Sbjct:    4 EGEEEGEEEEDPSLSIGSEQQRQGRQVRQLEKDELEFPDEVQTPDDRPAKERFARYRALKSLRTSPWDPNESLPREYARIFKFSSFAASLARVTSEMEEREKAQNRHLLATLLPPPASSATKKKDGEDDSGMEVEDEKSSDKFSEGFVPAGSYVTLELGGVPAEVGKRAQRLQAKESPLTVFSLLRYENKVSVLHFNILRHPACSTPVKSKDRLVFYTGFRSFEARPVFSEHNLNCDKHKFSRFLHGGRFAVATVFGPVSMPPCPVLVFRKSSPDEMGEEGKTATTPSRTGGSGSFLPATAGVVEPKSHTRDLTLVATGTLHTVDPDRIILKRILLTGYPIRVKRRSAVVKHMFYNPEDVKWFKPAELSTKLGAAGHIREPVGTHGLMKVRFNRIIQQSDTVCLPLFKRVFPKLLPEEIEEDGAHAAHFP 433          
BLAST of EWM27209.1 vs. NCBI_GenBank
Match: gi|298713556|emb|CBJ27084.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 388.267 bits (996), Expect = 2.030e-123
Identity = 217/470 (46.17%), Postives = 286/470 (60.85%), Query Frame = 0
Query:    2 SEYQASWFEGEEE-EGQNDEGGEEEEGEEEEGEEEEGEEEGEEEEDPSLSIGSEQQRQGRQVRQLEKDELEFPDEVQTPDDRPAKERFARYRALKSLRTSPWDPNESLPREYARIFKFSSFAASLARVTSEMEEREKAQNRHLL----ATLLPPPASSATKKKDGEDDSGMEVEDEK-----------SSDKFSEGFVPAGSYVTLELGGVPAEV-GKRAQRLQAKESPLTVFSLLRYENKVSVLHFNILRHPACSTPVKSKDRLVFYTGFRSFEARPVFSEHNLNCDKHKFSRFLHGGRFAVATVFGPVSMPPCPVLVFRKSSPDEMGEEGKTATTPSRTGGSGSFLPATAGVVEPKSHTRDLTLVATGTLHTVDPDRIILKRILLTGYPIRVKRRSAVVKHMFYNPEDVKWFKPAELSTKLGAAGHIREPVGTHGLMKVRFNRIIQQSDTVCLPLFKRVFPKLLPEEI 454
            S YQA W EG    +G+N+EG   +EGE    +E++ ++E  +  D +L          RQV   E ++  FPDEV TP DR A+ERFAR+RALKS RTSPWDP ESLP++YARIF+F  F A    V    E  E+ QN++LL     +      SS      G   +GM+V+              ++D+    +V +G YV + +  VP +V  KR + L  ++ PL +FSLLR+E+++S LHFNI R      P+ SK+ L+F  GFR +EARPVFS+ NLNCDKHK+ RFL   RF+ A+V+GP +  P PVLVF+        E   T +   RT                        LVATGTL  VDPDRI+LK+I+LTGYPIRV++R AVVKHMF+ P DVKWFKPAEL TK G  GHI+EPVGTHGLMKV FN+ ++Q+DTVCL L+KRV+PK++  E+
Sbjct:  409 SGYQAEWLEGAGSVDGENEEG--SDEGEAWAFDEKDDDDESVDPMDATLDAAR------RQV--AENEDTRFPDEVDTPADRSARERFARFRALKSFRTSPWDPKESLPKDYARIFQFEDFPAMQKDVLRAGEAMERQQNQNLLEVKEGSERGSRRSSFASSVVGTCGAGMDVDSAADQDLTDPSGVLAADQDRVSYVQSGQYVEVVIDSVPLDVLEKRKELLGGRDWPLVLFSLLRHEHRLSALHFNINRDARFVEPIPSKEPLIFQCGFRRWEARPVFSQINLNCDKHKYERFLRQDRFSAASVYGPTTFQPSPVLVFK--------EVAATGSNAKRT-----------------------VLVATGTLLGVDPDRIVLKKIVLTGYPIRVRKRKAVVKHMFHRPGDVKWFKPAELVTKYGLTGHIKEPVGTHGLMKVIFNKAVKQNDTVCLNLYKRVYPKMVAGEV 837          
BLAST of EWM27209.1 vs. NCBI_GenBank
Match: gi|356508752|ref|XP_003523118.1| (PREDICTED: pre-rRNA-processing protein TSR1 homolog [Glycine max] >gi|734406038|gb|KHN33807.1| Pre-rRNA-processing protein TSR1 like [Glycine soja] >gi|947112644|gb|KRH60946.1| hypothetical protein GLYMA_04G018100 [Glycine max])

HSP 1 Score: 340.502 bits (872), Expect = 1.745e-105
Identity = 193/472 (40.89%), Postives = 258/472 (54.66%), Query Frame = 0
Query:    2 SEYQASWF--EGEEEE----GQNDEGGEEEEGEE----EEGEEEEGEEEGEE----EEDPSLSIGSEQQRQGRQVRQLEKDEL-----------EFPDEVQTPDDRPAKERFARYRALKSLRTSPWDPNESLPREYARIFKFSSFAASLARVTSEMEEREKAQNRHLLATLLPPPASSATKKKDGEDDSGMEVEDEKSSDKFSEGFVPAGSYVTLELGGVPAEVGKRAQRLQAKESPLTVFSLLRYENKVSVLHFNILRHPACSTPVKSKDRLVFYTGFRSFEARPVFSEHNLNCDKHKFSRFLHGGRFAVATVFGPVSMPPCPVLVFRKSSPDEMGEEGKTATTPSRTGGSGSFLPATAGVVEPKSHTRDLTLVATGTLHTVDPDRIILKRILLTGYPIRVKRRSAVVKHMFYNPEDVKWFKPAELSTKLGAAGHIREPVGTHGLMKVRFNRIIQQSDTVCLPLFKRVFPK 448
            SEYQA+W   + +EEE     +ND+G   +EGE+    +E    + + +G      + D    I S         R+  +DEL           EFPDEV TP D PA++RFA+YR LKS RTS WDP ESLP++YARIF+F +F               K   +H+LA                     +E++ E   D      +P GSY  L + GVP+ V  +   L AK  P+T   LL++E+KVSVLHF++ +H     P+KSK+ L+F+ GFR F  RP+FS   +N DK+K  RFLH GRF+VA+++ P+S PP P ++ +++  D                      PA A V               G+L TVD DRIILKR++LTGYP RV +R A V+HMFYNPEDVKWFKP EL TK G  G I+EPVGTHG MK   N +++Q DTVC+ LFKR +PK
Sbjct:  386 SEYQAAWIVDDSDEEESDCDNENDDGMVLDEGEDGFPGQENRYSDFDGDGASLRLGDSDEETDIDSVMMEVDNLTREKIEDELKELKEAHAADEEFPDEVDTPLDVPARKRFAKYRGLKSFRTSSWDPKESLPQDYARIFEFDNF---------------KRTQKHVLA-------------------KALELDQENRED-----CIPVGSYARLHIMGVPSAVASKLS-LLAKTIPVTACGLLKHESKVSVLHFSVKKHETYDAPIKSKEELIFHVGFRQFVGRPIFSSEFINTDKNKMERFLHAGRFSVASIYAPISFPPLPTIILKRAGEDAA--------------------PAVAAV---------------GSLKTVDADRIILKRVILTGYPQRVSKRKASVRHMFYNPEDVKWFKPVELYTKRGLRGRIKEPVGTHGTMKCLLNGVLEQRDTVCMNLFKRAYPK 782          
BLAST of EWM27209.1 vs. NCBI_GenBank
Match: gi|1201320717|gb|OVA19550.1| (Ribosome biogenesis protein BMS1/TSR1 [Macleaya cordata])

HSP 1 Score: 340.117 bits (871), Expect = 2.325e-105
Identity = 184/476 (38.66%), Postives = 270/476 (56.72%), Query Frame = 0
Query:    2 SEYQASWF-----------EGEE----EEGQNDEGGEEEEGEEEEGEE----EEGEEEGEEEEDPSLSIGSEQQRQG-----RQVRQLEKDELEFPDEVQTPDDRPAKERFARYRALKSLRTSPWDPNESLPREYARIFKFSSFAASLARVTSEMEEREKAQNRHLLATLLPPPASSATKKKDGEDDSGMEVEDEKSSDKFSEGFVPAGSYVTLELGGVPAEVGKRAQRLQAKESPLTVFSLLRYENKVSVLHFNILRHPACSTPVKSKDRLVFYTGFRSFEARPVFSEHNLNCDKHKFSRFLHGGRFAVATVFGPVSMPPCPVLVFRKSSPDEMGEEGKTATTPSRTGGSGSFLPATAGVVEPKSHTRDLTLVATGTLHTVDPDRIILKRILLTGYPIRVKRRSAVVKHMFYNPEDVKWFKPAELSTKLGAAGHIREPVGTHGLMKVRFNRIIQQSDTVCLPLFKRVFPKLLPEE 453
            S+YQA+WF            G++    +EG ND  G ++    +  ++      G+ +GE E D  ++ G +  ++      R++++   ++ EFPDEV TP D PA++RFA+YR LKS RTS WDP ESLP EYAR+F+F +F+ +   V ++  + E+      L                                       PAGSYV L +  VP +V  + + LQ K+ P+ V  LL++E+K+SVLHF+I +H   + P+KSK+ L+F+ GFR F  RP+FS   +N +KHK  RFLH GRF++A+++ PVS PP P++V +                     G G        VV+P        + A G+L ++DPDRIILK+I+LTGYP RV ++ A+V++MF+NP+DV+WFKP E+ +K G  G ++EPVGTHG MK  FN ++QQ DTVC+ LFKRVFPK  PE+
Sbjct:  385 SKYQAAWFGDDDVDDEDSENGDDGMVLDEGDNDSPGLQDNNHWDSHDDGTSLNSGDSDGETEADTMMTDGEQLTKEQIEDEIRKIKEAHAEDEEFPDEVDTPTDVPARDRFAKYRGLKSFRTSSWDPKESLPPEYARLFEFVNFSRTQKGVLAKALDMEQGSMDECL---------------------------------------PAGSYVRLHVKEVPIDVASKLRELQ-KKLPVLVCGLLQHESKMSVLHFSIKKHDTYNAPIKSKETLIFHVGFRQFVVRPIFSSDAINSNKHKMERFLHAGRFSMASIYAPVSFPPLPLVVLK--------------------SGEGE-------VVKP-------AVAAVGSLRSIDPDRIILKKIILTGYPQRVSKKKAIVRYMFHNPQDVRWFKPVEVWSKCGRRGRVKEPVGTHGAMKCIFNGVVQQHDTVCMTLFKRVFPK-WPEQ 785          
BLAST of EWM27209.1 vs. NCBI_GenBank
Match: gi|502131129|ref|XP_004500884.1| (PREDICTED: pre-rRNA-processing protein TSR1 homolog [Cicer arietinum])

HSP 1 Score: 338.576 bits (867), Expect = 1.040e-104
Identity = 195/473 (41.23%), Postives = 262/473 (55.39%), Query Frame = 0
Query:    2 SEYQASWFEGEEEEGQNDEGGEEEEGEEEEGEEEEGEEEGE-----------------EEEDPSLSIGSEQQRQGRQVRQLEKDEL--------EFPDEVQTPDDRPAKERFARYRALKSLRTSPWDPNESLPREYARIFKFSSFAASLARVTSEMEEREKAQNRHLLATLLPPPASSATKKKDGEDDSGMEVEDEKSSDKFSEGFVPAGSYVTLELGGVPAEVGKRAQRLQAKESPLTVFSLLRYENKVSVLHFNILRHPACSTPVKSKDRLVFYTGFRSFEARPVFSEHNLNCDKHKFSRFLHGGRFAVATVFGPVSMPPCPVLVFRKSSPDEMGEEGKTATTPSRTGGSGSFLPATAGVVEPKSHTRDLTLVATGTLHTVDPDRIILKRILLTGYPIRVKRRSAVVKHMFYNPEDVKWFKPAELSTKLGAAGHIREPVGTHGLMKVRFNRIIQQSDTVCLPLFKRVFPKL 449
            SEYQA+WF  E +E ++D   E++    +E E+E   +EG                  +EE  + S+  E     R+  Q E  EL        EFPDEV TP D PA++RFA+YR LKS RTS WDP ESLP++YA+IF+F +F               K   +++LA  L         + DGE+                E  +P GSYV L +  VP+ V  +   L A  +P+T   L++ E+K+SVLHF++ +H     P+KSK+ L+F+ GFR F  RP FS   +N +K+K  RFLH GRF+VAT++ P+S+PP P +V ++     +GE+                +PA A V               G+L TVDPDRIILKR++LTGYP RV +R A VKHMFYNPEDVKWFKP EL TK G  G I+EPVGTHG MK   N +++Q DTVCL L+KR +PK 
Sbjct:  385 SEYQAAWFNDEPDEEESDCDNEDDGMLLDEIEDEFPGQEGNMYLDADGDEASQRFGDSDEETDNDSVMMEVDNMTREKIQDELKELKEAHGADEEFPDEVDTPLDVPARKRFAKYRGLKSFRTSSWDPKESLPQDYAKIFEFGNF---------------KRLQKYVLAKAL---------ELDGEN---------------REDCIPVGSYVRLHIKEVPSAVALKLCML-ANTTPVTACGLMKEESKLSVLHFSVKKHETYDAPIKSKEELIFHVGFRQFVGRPTFSSEFINTNKNKMERFLHAGRFSVATIYAPISLPPLPTIVLKR-----IGEDA---------------VPAVAAV---------------GSLKTVDPDRIILKRVILTGYPQRVSKRKASVKHMFYNPEDVKWFKPVELYTKRGLRGRIKEPVGTHGAMKCLLNGVLEQRDTVCLNLYKRAYPKF 782          
BLAST of EWM27209.1 vs. NCBI_GenBank
Match: gi|595852682|ref|XP_007210358.1| (pre-rRNA-processing protein TSR1 homolog [Prunus persica] >gi|1139774633|gb|ONI09105.1| hypothetical protein PRUPE_5G218100 [Prunus persica])

HSP 1 Score: 337.806 bits (865), Expect = 2.040e-104
Identity = 187/474 (39.45%), Postives = 259/474 (54.64%), Query Frame = 0
Query:    2 SEYQASWF-EGEEEEGQNDEGGEEEEG---------------------EEEEGEEEEGEEEGEEEEDPSLSIGSEQQRQG-----RQVRQLEKDELEFPDEVQTPDDRPAKERFARYRALKSLRTSPWDPNESLPREYARIFKFSSFAASLARVTSEMEEREKAQNRHLLATLLPPPASSATKKKDGEDDSGMEVEDEKSSDKFSEGFVPAGSYVTLELGGVPAEVGKRAQRLQAKESPLTVFSLLRYENKVSVLHFNILRHPACSTPVKSKDRLVFYTGFRSFEARPVFSEHNLNCDKHKFSRFLHGGRFAVATVFGPVSMPPCPVLVFRKSSPDEMGEEGKTATTPSRTGGSGSFLPATAGVVEPKSHTRDLTLVATGTLHTVDPDRIILKRILLTGYPIRVKRRSAVVKHMFYNPEDVKWFKPAELSTKLGAAGHIREPVGTHGLMKVRFNRIIQQSDTVCLPLFKRVFPK 448
            SEYQA+W  +G +EEG + +  EE +G                      +++     G  +GE + D  +  G    ++      ++++Q   D+ EFPDEV TP D PA++RFA+YR LKS RTS WDP ESLP EYARIF F +F  +   V ++  + E+ QNR   AT                                      A SY  L +  VP  V  +    QAK  P+T   LL++E+K+SVLHF++ +H + S P+K+KD L+F+ GFR F ARP++S  N+N DKHK  RFLH GRF++A+++ P+S PP P++  R S                   G+G+  PA A V               GTL ++DPDRIILK+I LTGYP RV +  A V++MF+NPEDVKWFKP E+ TK G  G I+EP+GTHG +K  FN ++QQ DTVC+ L+KR +PK
Sbjct:  385 SEYQAAWIVDGTDEEGSSTDEDEEADGMVLDEGDIGYPGQEGTKYSDLSDDQASLSFGNSDGETDVDSVMMEGENLTKEQLANEIQKIKQAHADDEEFPDEVDTPLDIPARKRFAKYRGLKSFRTSTWDPKESLPLEYARIFAFDNFNRTQKNVLAKALDMEQ-QNRDDCAT--------------------------------------ASSYARLYIKDVPTSVASKLCN-QAKTMPVTACGLLQHESKMSVLHFSVKKHDSYSAPIKAKDELIFHVGFRQFIARPIYSTDNMNSDKHKMERFLHAGRFSMASIYAPISFPPLPLIALRSSE------------------GAGT-APAVAAV---------------GTLKSIDPDRIILKKITLTGYPQRVSKLKASVRYMFHNPEDVKWFKPVEVWTKCGRRGRIKEPLGTHGALKCIFNGVLQQHDTVCMSLYKRSYPK 784          
BLAST of EWM27209.1 vs. NCBI_GenBank
Match: gi|950968763|ref|XP_014499647.1| (PREDICTED: pre-rRNA-processing protein TSR1 homolog [Vigna radiata var. radiata])

HSP 1 Score: 337.806 bits (865), Expect = 2.138e-104
Identity = 191/471 (40.55%), Postives = 258/471 (54.78%), Query Frame = 0
Query:    2 SEYQASWF----EGEEEEGQNDEGGEEEEGEEEEGEEEEGEEEGEEEEDPSLSIGSEQQRQGRQVRQLEKDEL--------------------EFPDEVQTPDDRPAKERFARYRALKSLRTSPWDPNESLPREYARIFKFSSFAASLARVTSEMEEREKAQNRHLLATLLPPPASSATKKKDGEDDSGMEVEDEKSSDKFSEGFVPAGSYVTLELGGVPAEVGKRAQRLQAKESPLTVFSLLRYENKVSVLHFNILRHPACSTPVKSKDRLVFYTGFRSFEARPVFSEHNLNCDKHKFSRFLHGGRFAVATVFGPVSMPPCPVLVFRKSSPDEMGEEGKTATTPSRTGGSGSFLPATAGVVEPKSHTRDLTLVATGTLHTVDPDRIILKRILLTGYPIRVKRRSAVVKHMFYNPEDVKWFKPAELSTKLGAAGHIREPVGTHGLMKVRFNRIIQQSDTVCLPLFKRVFPK 448
            SEYQA+W     +  + + +ND+G   +EGE+    +E  +    + +D SL +G  ++        +E D L                    EFPDEV TP D PA++RFA+YR LKS RTS WDP ESLP++YA+IF+F +F               K   +H+LA                     +E++ E      SE  +P GSY  L++  VP+ V  +   L +K  P+T   LL++E+KVSVLHF++ +H     P+KSK+ LVF+ GFR F  RPVFS   +N DK+K  RFLH GRF+VA+++ P+S PP P ++ + S        G+ A             P  A V               G+L TVDPDRIILKR++LTGYP RV +R A V+HMFYNPEDVKWFKP EL TK G  G I+EPVGTHG MK   N +++Q DTVC+ LFKR +PK
Sbjct:  386 SEYQAAWIVDDSDESDFDDENDDGMVLDEGEDGLRGKETNKYSEFDGDDVSLRLGDSEEETDNDSVMMEVDNLTREKIQDELKELKEAHAADEEFPDEVDTPLDVPARKRFAKYRGLKSFRTSSWDPKESLPQDYAKIFEFDNF---------------KRTQKHVLA-------------------KALELDQE-----ISEHCIPVGSYARLQIKEVPSAVASKLC-LLSKRMPVTTCGLLKHESKVSVLHFSVKKHETYDAPIKSKEELVFHVGFRQFVGRPVFSSEFINTDKNKMERFLHAGRFSVASIYAPISFPPLPSIILKIS--------GENAA------------PVVAAV---------------GSLKTVDPDRIILKRVILTGYPQRVSKRKASVRHMFYNPEDVKWFKPVELYTKRGLRGRIKEPVGTHGTMKCLLNGVLEQRDTVCMNLFKRAYPK 781          
BLAST of EWM27209.1 vs. NCBI_GenBank
Match: gi|657966111|ref|XP_008374737.1| (PREDICTED: pre-rRNA-processing protein TSR1 homolog [Malus domestica])

HSP 1 Score: 336.65 bits (862), Expect = 5.053e-104
Identity = 187/470 (39.79%), Postives = 261/470 (55.53%), Query Frame = 0
Query:    2 SEYQASWF---EGEEEEGQNDEG-------------GEEEEGEEEEGEEEEG--EEEGEEEEDPSL----SIGSEQ-QRQGRQVRQLEKDELEFPDEVQTPDDRPAKERFARYRALKSLRTSPWDPNESLPREYARIFKFSSFAASLARVTSEMEEREKAQNRHLLATLLPPPASSATKKKDGEDDSGMEVEDEKSSDKFSEGFVPAGSYVTLELGGVPAEVGKRAQRLQAKESPLTVFSLLRYENKVSVLHFNILRHPACSTPVKSKDRLVFYTGFRSFEARPVFSEHNLNCDKHKFSRFLHGGRFAVATVFGPVSMPPCPVLVFRKSSPDEMGEEGKTATTPSRTGGSGSFLPATAGVVEPKSHTRDLTLVATGTLHTVDPDRIILKRILLTGYPIRVKRRSAVVKHMFYNPEDVKWFKPAELSTKLGAAGHIREPVGTHGLMKVRFNRIIQQSDTVCLPLFKRVFPK 448
            SEYQA+W      EEE   +DE              G+++    +E +++    + +GE + D  +    ++  EQ + + R+++Q   D+ EFPDEV TP D PA++RFA+YR LKS RTS WDP ESLP EYARIF F +F  +                +++LA  L                 GM+ E+       S+    AGSY  L +  VPA V  +   + AK  P+    LL++E+K+SVLHF+I +H   S P+KSKD L+F+ GFR F ARP++S  N+N +KHK  RFLH GRF++A+++ P+S PP P++  + S                             GV  P       T+ A G L  +DPDRIILK+I LTGYP RV +  A V++MF+NPEDVKWFKP E+ TK G  G I+EP+GTHG +K  FN ++QQSDTVC+ L+KR +PK
Sbjct:  385 SEYQAAWIVDDTDEEESSTDDEADGMILDERDGGYPGQDDNNYSDESDDQASIRDSDGETDVDSVMMEGENLTKEQLENEIRKIKQAHADDEEFPDEVDTPLDIPARKRFAKYRGLKSFRTSSWDPKESLPAEYARIFAFDNFNRT---------------QKNVLAKAL-----------------GMDQEN-------SDDCATAGSYARLYITEVPASVASKLC-MHAKTIPVVACGLLQHESKMSVLHFSIKKHDTFSAPIKSKDELIFHVGFRQFIARPIYSTDNMNSNKHKMERFLHPGRFSMASIYAPISFPPLPLIALKSSE----------------------------GVAAPP------TVAAVGALKCIDPDRIILKKITLTGYPQRVSKLKASVRYMFHNPEDVKWFKPVEVWTKCGRRGRIKEPLGTHGALKCIFNGVLQQSDTVCMSLYKRAYPK 780          
The following BLAST results are available for this feature:
BLAST of EWM27209.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585109389|gb|EWM27209.1|0.000e+0100.00pre-rrna-processing protein tsr1 [Nannochloropsis ... [more]
gi|553190805|ref|XP_005855264.1|0.000e+098.93pre-rrna-processing protein tsr1 [Nannochloropsis ... [more]
gi|553181644|ref|XP_005853601.1|0.000e+0100.00ribosome biogenesis protein [Nannochloropsis gadit... [more]
gi|298713556|emb|CBJ27084.1|2.030e-12346.17conserved unknown protein [Ectocarpus siliculosus][more]
gi|356508752|ref|XP_003523118.1|1.745e-10540.89PREDICTED: pre-rRNA-processing protein TSR1 homolo... [more]
gi|1201320717|gb|OVA19550.1|2.325e-10538.66Ribosome biogenesis protein BMS1/TSR1 [Macleaya co... [more]
gi|502131129|ref|XP_004500884.1|1.040e-10441.23PREDICTED: pre-rRNA-processing protein TSR1 homolo... [more]
gi|595852682|ref|XP_007210358.1|2.040e-10439.45pre-rRNA-processing protein TSR1 homolog [Prunus p... [more]
gi|950968763|ref|XP_014499647.1|2.138e-10440.55PREDICTED: pre-rRNA-processing protein TSR1 homolo... [more]
gi|657966111|ref|XP_008374737.1|5.053e-10439.79PREDICTED: pre-rRNA-processing protein TSR1 homolo... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna3450rna3450Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications