rna3448, rna3448 (mRNA) Nannochloropsis gaditana

Overview
Namerna3448
Unique Namerna3448
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length297
Alignment locationCM002461.1:439259..440738 +

Link to JBrowse

Properties
Property NameValue
ProductTetratricopeptide-like helical
Orig transcript idgnl|cribi|Naga_100038g47.7726.mrna
Orig protein idgnl|cribi|Naga_100038g47.7726
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002461.1supercontigCM002461.1:439259..440738 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100038g47gene3322Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna3448rna3448-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM27271.1cds3439Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna3448 ID=rna3448|Name=rna3448|organism=Nannochloropsis gaditana|type=mRNA|length=297bp
ATGAGCGACCACACTGAATTCGAGGGTTGTGAATGCTCTAAACCTCTGAT
ACCTAAAGCAACAAAGCTTACCCATGGAAGAATCAGGAACCTAAGTTTGT
CGCGTCCTTCCTGCAATAAAAAAAGCGACATACTCCTTGCAATGACCATC
ATCCTGCTCGGCTTCTCGTTGTATTGTATTTTCCCCCACCAAATATCTAC
CGGTGATAAAGCCCTGGATTTTTGGAGGGTCCCTTTTCTAGAGTACGATT
GTGTAGTGATCTTTCCCATTCGAAAAGAAATAACAACGCGAAGATGA
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protein sequence of rna3448

>rna3448-protein ID=rna3448-protein|Name=rna3448|organism=Nannochloropsis gaditana|type=polypeptide|length=385bp
MAASSAASAVAATSARPYISSRFTEVAKALLAEDWARVDTRVPHLLARLT
ERGAHQCWHKHGTFKQHLLGVWKILSLWEQPQTLARCGLYHSAYSNSYVN
LAIFKAGVDRDLVQKDCGKEAEELIYKFCVVDRQKIIVDTLFPMERVPAE
GLVVPHIHTGDSVHLSSKVLGQLLVMTMADVADQQYGWQDDLFGDAQWRP
CQASNEDHEETKKSDSEVMHPFTLWPGISKPGLWMYFVSKLATLARTCPM
PVRPPVFNEGQFLLDRTAERQARDLYWEVMSEDPRDKGKIDKSISRLTQA
LALNPFLAEPHTLLAQCHLVNGDFPRALLAAEKSIDLMLEWGTNWDKRVS
FEAWMAWTRVLRQHAEDKTPWHSNAWGVINLGLVR
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mRNA from alignment at CM002461.1:439259..440738+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna3448 ID=rna3448|Name=rna3448|organism=Nannochloropsis gaditana|type=mRNA|length=1480bp|location=Sequence derived from alignment at CM002461.1:439259..440738+ (Nannochloropsis gaditana)
TGTTACAAGTGCCGCTTTCGATATtggctacccggaggtacGTGACGACA
TGCACTCGATGGAAACGTATGTGTAAGTGCGTGCCACATCAAAGCGCGTG
GATGGAGAGTAGATAATATAAATCGAAGTTTTATGTTAAGAGCGCCCACT
TTACATGTGGATGTCTAACGCATGAAcggaaagaagagagaacTCAGCCC
TAGACACGTTTTATCGCGCCCTCAGGTCCTCAGCTAGGAGAGCGCTTGTT
CAtccgccttcttttctcgtCGTTCACGTAAGAAGAGAGACCTATACCCG
TCGCTTCGAGCATGGCCGCTTCTTCGGCGGCATCAGCAGTAGCAGCAACG
TCTGCGCGTCCTTAtatttcctcccgcttcacGGAAGTCGCCAAGGCGTT
GCTAGCTGAAGACTGGGCCCGGGTGGACACGCGGGTGCCTCACTTGCTGG
CCCGCCTCACGGAGCGAGGTGCGCACCAATGCTGGCACAAGCATGGAACT
TTTAAGCAGCATCTTTTGGGGGTCTGGAAGATCTTGTCTTTGTGGGAGCA
ACCTCAAACCTTGGCCCGCTGTGGTCTATATCATTCGGCGTATTCGAATT
CTTATGTCAACCTAGCTATCTTCAAAGCCGGCGTGGACAGGGATTTAGTG
CAGAAAGATTGTGGcaaagaagcggaagagcTGATTTACAAGTTTTGTGT
GGTAGACAGGCAGAAAATTATCGTGGACACCCTCTTTCCGATGGAACGCG
TCCCTGCTGAAGGCCTTGTCGTGCCGCACATCCACACGGGAGACAGCGTG
CACTTATCAAGCAAGGTACTGGGCCAGCTATTGGTGATGACGATGGCAGA
CGTGGCGGATCAGCAGTATGGATGGCAAGACGACTTGTTCGGTGACGCCC
AATGGCGGCCTTGTCAAGCTAGCAATGAAGACCATGAGGAGACTAAAAAA
AGCGACAGCGAAGTCATGCACCCATTCACCTTGTGGCCCGGCATTTCAAA
ACCCGGACTCTGGATGTACTTCGTCAGTAAGCTGGCCACTTTGGCTCGGA
CATGCCCGATGCCGGTCCGTCCCCCTGTCTTTAACGAAGGCCAATTCCTC
TTGGATCGAACCGCGGAACGCCAGGCCCGGGACTTGTATTGGGAAGTGAT
GTCGGAGGACCCCCGGGACAAAGGCAAAATTGACAAGAGTATCTCACGCC
TCACACAAGCGCTCGCCCTGAACCCTTTCCTCGCTGAGCCTCACACCTTG
CTGGCACAGTGTCATCTCGTCAATGGCGACTTCCCGAGGGCGCTGCTGGC
AGCAGAGAAGTCGATAGACTTGATGCTCGAATGGGGAACCAACTGGGACA
AGCGTGTGTCCTTTGAGGCCTGGATGGCCTGGACGCGCGTCCTCCGACAG
CATGCCGAAGACAAGACGCCCTGGCATTCAAATGCGTGGGGAGTCATCAA
TTTGGGGCTAGTACGGtgacaggagggggg
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Coding sequence (CDS) from alignment at CM002461.1:439259..440738+

>rna3448 ID=rna3448|Name=rna3448|organism=Nannochloropsis gaditana|type=CDS|length=1158bp|location=Sequence derived from alignment at CM002461.1:439259..440738+ (Nannochloropsis gaditana)
ATGGCCGCTTCTTCGGCGGCATCAGCAGTAGCAGCAACGTCTGCGCGTCC
TTAtatttcctcccgcttcacGGAAGTCGCCAAGGCGTTGCTAGCTGAAG
ACTGGGCCCGGGTGGACACGCGGGTGCCTCACTTGCTGGCCCGCCTCACG
GAGCGAGGTGCGCACCAATGCTGGCACAAGCATGGAACTTTTAAGCAGCA
TCTTTTGGGGGTCTGGAAGATCTTGTCTTTGTGGGAGCAACCTCAAACCT
TGGCCCGCTGTGGTCTATATCATTCGGCGTATTCGAATTCTTATGTCAAC
CTAGCTATCTTCAAAGCCGGCGTGGACAGGGATTTAGTGCAGAAAGATTG
TGGcaaagaagcggaagagcTGATTTACAAGTTTTGTGTGGTAGACAGGC
AGAAAATTATCGTGGACACCCTCTTTCCGATGGAACGCGTCCCTGCTGAA
GGCCTTGTCGTGCCGCACATCCACACGGGAGACAGCGTGCACTTATCAAG
CAAGGTACTGGGCCAGCTATTGGTGATGACGATGGCAGACGTGGCGGATC
AGCAGTATGGATGGCAAGACGACTTGTTCGGTGACGCCCAATGGCGGCCT
TGTCAAGCTAGCAATGAAGACCATGAGGAGACTAAAAAAAGCGACAGCGA
AGTCATGCACCCATTCACCTTGTGGCCCGGCATTTCAAAACCCGGACTCT
GGATGTACTTCGTCAGTAAGCTGGCCACTTTGGCTCGGACATGCCCGATG
CCGGTCCGTCCCCCTGTCTTTAACGAAGGCCAATTCCTCTTGGATCGAAC
CGCGGAACGCCAGGCCCGGGACTTGTATTGGGAAGTGATGTCGGAGGACC
CCCGGGACAAAGGCAAAATTGACAAGAGTATCTCACGCCTCACACAAGCG
CTCGCCCTGAACCCTTTCCTCGCTGAGCCTCACACCTTGCTGGCACAGTG
TCATCTCGTCAATGGCGACTTCCCGAGGGCGCTGCTGGCAGCAGAGAAGT
CGATAGACTTGATGCTCGAATGGGGAACCAACTGGGACAAGCGTGTGTCC
TTTGAGGCCTGGATGGCCTGGACGCGCGTCCTCCGACAGCATGCCGAAGA
CAAGACGCCCTGGCATTCAAATGCGTGGGGAGTCATCAATTTGGGGCTAG
TACGGtga
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Synonyms
Publications