rna3444, rna3444 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna3444
Unique Name	rna3444
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	948
Alignment location	CM002461.1:430244..433441 -

Link to JBrowse

Properties


Property Name	Value
Product	type a von willebrand factor domain-containing protein
Orig transcript id	gnl\|cribi\|Naga_100038g43.7713.mrna
Orig protein id	gnl\|cribi\|Naga_100038g43.7713
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002461.1	supercontig	CM002461.1:430244..433441 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100038g43	gene3318	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM27258.1	cds3435	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna3444	rna3444-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002461.1:430244..433441-
coding sequence from alignment at CM002461.1:430244..433441-

mRNA sequence

>rna3444 ID=rna3444|Name=rna3444|organism=Nannochloropsis gaditana|type=mRNA|length=948bp
ATGCAAATACTCTGTGTGCTTCTTGTCGGCATTTTAACCCTTTCTGGGCT
CATAAACGCGAATCTTGGACCTCCTTACCTGTACGTGACCATGCACGGCG
GAGAGGATAAGGGAGCGGTCAATCAGGTATATATCTACTCGCGCGCCGGC
CACGCTCTAGGCGAAGCCCTCGAGGAAAAAACCGACCTCAACGAACTGCG
GGGCATGGTGCTCTGGGGAGACTCAATGTTGTTGGCTAATGCCAATCGGA
AAAACTCATTCGTGGCACAGTTTCAAGGGGCGTGTCTTGAAACTGAAAAA
ATGAAGCAGATGCGAGTCATCGTCCCGAAGGACACTCCCGGCATTGACCA
CCCATACGGCGTCACGACGGACAACTCTCGTTTCCTTTATGTCTCGACGC
AGGGAACCAACGCTGTCTATCGATTCTACTTGACGACGGGAGAATCTGGG
CCAATAGCGCCGGCGTTGGCTGCACAGGGCGCCAAGCAAGACGATTTTCC
GGGGCTCTTTGCACAGTTCGACCCCGAGTCCGACGGCACGCGAGGCATAA
CATGGCACCCTGGGCGAAAGTTGTTGTTTGTTGCCAACAAGGATATTGGC
GTAGTCGCTTTAAATGAGGACGGATACGTGAAAGGAATTTTAGACGCAGA
TGAACCAATCGCGGTGTCATACTGCCCTGCACGAGACTCGATCTTTGTCT
CGAGCAAGGGGGACGACTCTGTTAGCGAATGGAATCCTCACTCTCTGAAG
CGAATGAAGAAATGGACCAGCCACCTTTTAGCGCACCCGGCAGGTCTAGC
CTGCTTCGAGGGGAGCGTCTTCGTGGTCTCGCAGGATGAAGGCACCATTC
TGGAGATTGACCTGGAGGGGGGCAAGGTCCGTGTGCTTGTGGAAGATTTG
CCTGACAAGGGTGAGCAAATCATTCTCTCTCATGCCCAGTCGTGCTAA

protein sequence of rna3444

>rna3444-protein ID=rna3444-protein|Name=rna3444|organism=Nannochloropsis gaditana|type=polypeptide|length=1065bp
MLVCFILDVNASMGHRSPPSGPHATTNLRGAGLSSFEWAKAAVEYFIKAR
QKTNMKDQYFLVTTEEGPGCVKISWGDSLQRFDDNLRLLAPLPADGSKGG
TNVGHALSMAFALLNQYRLQHGIDNYGQGRCPWLVEPGCCLLFTGGNSSR
PTSSSVQKAIGPVSPFGGDAEAPAPSMTLQLTCSAHDLTRDPYRWDQRFF
PFIIHHSPSRPLADSSSLDDSKKREEGSSTTPSPVSTQIPYFAVFKALAD
ATGGYCSVSESLMGLTLNTDLVMHKLAFVGPMVVLAPDLGAETCGHATKS
AQAQSRAQEQEAGRQGQSQVALYPPETCGEAFHSPHLTSPAHGADPISCA
AAVRAILCLNHESAGFSWPIPEAFWVDRTLEHLPKRDAHPILLYSRLATD
STDAALASLTRLEAQGLTMDRYPLEWCGGGAGAAPSGGGLRMTRGMRWPV
YLMGSGRMKGSRGCPFGFLEASDVAGRVTLVLLPYDYPKLVELVQVAVEG
GSASGHLTSLPVKWRPEFNSFLAQTPPYYFSALRRCLKKVGLHTQVPEQK
TGGLSQLVIKRLQRIREQARAENQRYEMSRREHPHNRGLEFSGDMGTGAS
GRDGLEGGGSYLAGGKGNGEEGRETSEEGAKSQDERLFDPSKSLLSMWEG
LRQGLFGEGDHVISGLYVRGFQSWQGACGQPKNGRRRPEEWMLLQEVGAL
QMPEIPINEMGAYSERLLQMEVFRDPLDEYDPDDDTPEAWKQRKLAVNFG
NPFRRPRQHHVPHVEAQQAGDGKDDVGRLPSAEADNEAEVLGPHSSLGED
LPEKWGKGDEAFVYGSDAWPGGVQRRAEGEDGSALLAPSTAEQPHRKRRR
LNELPPLPTGRPVPKRHRSRMDRKTTPRAAPPARSVGTVPTAMSSPPLSP
LPGPLAPLTPEENDHWSDRVAEEGISETRRKEDPVAVDTGGSLVGPGAGV
AASEAVTSLERNSSNAPHKITLPGASTIDPTVSNVRGPDAPHLTSHPPSQ
HAAIGGAPKRSIEEMLKDRELVTPNAEGWMLAWSKREKRLYYFNIKTNVA
VWTAPPGLPAINEDT

mRNA from alignment at CM002461.1:430244..433441-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna3444 ID=rna3444|Name=rna3444|organism=Nannochloropsis gaditana|type=mRNA|length=3198bp|location=Sequence derived from alignment at CM002461.1:430244..433441- (Nannochloropsis gaditana)
ATGCTCGTTTGTTTCATTTTGGATGTAAATGCCAGCATGGGGCACCGAAG
CCCCCCCAGTGGGCCTCATGCAACAACGAACCTGCGCGGGGCAGGACTAA
GCTCGTTTGAGTGGGCCAAGGCCGCAGTCGAGTACTTCATCAAAGCACGG
CAAAAAACCAATATGAAAGATCAGTACTTTTTGGTTACGACCGAAGAAGG
GCCTGGATGCGTAAAGATCTCATGGGGTGATTCTTTACAGCGTTTCGACG
ACAACCTGCGCCTTCTTGCTCCTTTGCCTGCAGACGGCTCGAAGGGAGGT
ACTAATGTAGGTCATGCGCTATCTATGGCCTTCGCCTTGCTGAATCAGTA
CCGTCTGCAGCATGGTATAGATAATTATGGGCAGGGTCGTTGCCCCTGGC
TTGTTGAACCCGGATGCTGTCTGCTGTTTACCGGCGGAAACAGCTCGCGT
CCGACCTCCTCTTCTGTCCAAAAAGCGATAGGACCGGTATCACCTTTTGG
AGGCGATGCAGAGGCGCCCGCTCCAAGCATGACGTTGCAGCTCACGTGCT
CGGCACATGATTTGACTCGAGATCCTTATCGGTGGGATCAGCGCTTCTTC
CCCTTCATCATCCACCACTCTCCGTCCCGTCCACTCGCAGACAGCAGCAG
TCTCGACGATTCCAAAAAGAGGGAAGAGGGCTCCAGTACAACGCCTTCTC
CTGTCTCCACACAAATTCCCTACTTCGCTGTCTTCAAGGCACTGGCGGAC
GCGACGGGTGGCTACTGCAGCGTGAGCGAGAGTCTAATGGGGCTAACACT
GAACACGGACCTCGTCATGCACAAACTCGCCTTCGTCGGACCCATGGTCG
TGCTGGCTCCCGATCTGGGCGCCGAGACGTGCGGACACGCCACTAAAAGC
GCTCAGGCGCAGTCTCGAGCACAGGAGCAGGAGGCGGGACGACAGGGTCA
GTCGCAAGTGGCCCTCTATCCGCCAGAAACCTGCGGCGAGGCCTTCCATT
CCCCCCATTTGACCTCACCCGCCCATGGTGCCGACCCCATCTCCTGTGCT
GCTGCCGTACGGGCTATTCTATGCCTGAATCATGAGTCAGCTGGGTTCAG
CTGGCCTATTCCGGAGGCTTTTTGGGTGGACCGGACGCTCGAACATCTCC
CCAAACGCGACGCTCACCCTATCCTGCTCTACAGCCGGCTTGCGACTGAC
TCAACGGATGCGGCGCTAGCCTCGCTCACCCGGCTAGAGGCACAGGGCCT
GACTATGGATAGGTACCCTCTGGAATGGTGCGGGGGGGGGGCGGGTGCTG
CCCCCTCCGGCGGGGGGCTGCGGATGACCCGTGGGATGCGGTGGCCGGTG
TATTTGATGGGCAGCGGGCGGATGAAGGGCAGCCGGGGCTGTCCGTTCGG
GTTCTTGGAGGCCTCCGATGTGGCGGGGAGGGTGACCTTAGTCTTGCTCC
CCTACGACTACCCCAAACTGGTGGAGCTCGTACAAGTGGCTGTGGAGGGA
GGGTCCGCCTCCGGGCATTTGACCTCCCTCCCGGTCAAATGGCGCCCAGA
GTTCAACAGCTTCCTGGCTCAGACTCCGCCGTACTACTTTTCGGCCCTTC
GCAGGTGTCTCAAAAAGGTGGGGCTGCACACCCAGGTTCCCGAGCAGAAG
ACGGGAGGGCTCAGCCAGCTTGTGATAAAGCGGTTGCAGCGTATCCGAGA
GCAGGCGCGGGCGGAGAATCAGAGGTATGAGATGAGTCGAAGAGAGCATC
CACATAATCGAGGATTGGAATTTTCCGGGGACATGGGCACCGGGGCGTCC
GGAAGGGACGGACTGGAGGGGGGGGGCAGCTACCTCGCGGGGGGTAAGGG
GAATGGGGAAGAGGGGAGAGAGACGAGCGAAGAAGGGGCAAAAAGCCAAG
ACGAAAGGCTCTTTGATCCGAGTAAGAGCCTGCTTTCCATGTGGGAGGGG
CTACGTCAGGGCCTGTTCGGGGAAGGGGACCACGTCATATCGGGGCTTTA
CGTGAGGGGCTTTCAGAGTTGGCAGGGAGCCTGCGGGCAGCCCAAAAACG
GCCGGCGGCGGCCGGAGGAATGGATGCTCTTGCAAGAAGTCGGCGCGTTG
CAGATGCCAGAGATTCCCATTAACGAGATGGGCGCCTACAGTGAGAGGTT
GCTGCAGATGGAGGTGTTCAGAGACCCGCTGGACGAGTACGACCCAGACG
ATGACACCCCCGAGGCCTGGAAGCAGCGCAAACTCGCCGTAAACTTTGGC
AATCCCTTTCGACGACCGCGACAGCACCATGTACCCCATGTGGAAGCTCA
GCAGGCAGGAGACGGGAAGGACGATGTTGGGCGTTTGCCCTCTGCCGAGG
CGGACAATGAGGCGGAGGTCCTGGGTCCGCACTCCTCGCTAGGGGAGGAC
CTGCCGGAAAAATGGGGAAAGGGTGATGAAGCCTTTGTGTACGGCAGCGA
CGCATGGCCGGGCGGGGTCCAAAGGAGGGCGGAGGGGGAGGACGGGTCGG
CTTTACTAGCACCAAGCACTGCCGAGCAGCCTCATCGAAAGCGACGGCGT
CTGAACGAGCTGCCCCCCTTGCCAACAGGTCGCCCGGTCCCCAAGCGGCA
TCGGTCGAGAATGGACAGGAAGACGACACCGAGGGCGGCGCCGCCCGCGA
GGAGCGTGGGCACGGTGCCTACCGCCATGTCCTCCCCGCCTCTGTCGCCT
CTGCCAGGTCCTCTGGCACCTCTCACGCCGGAGGAGAATGACCATTGGAG
TGACAGAGTGGCTGAAGAGGGGATTTCAGAGACGAGGAGGAAAGAAGACC
CTGTCGCCGTAGACACAGGGGGAAGCTTGGTTGGGCCTGGCGCGGGTGTC
GCCGCCTCCGAGGCTGTAACTTCTCTTGAGAGGAACAGCAGCAACGCGCC
CCACAAGATCACTCTACCGGGAGCTAGCACGATTGATCCGACAGTGTCAA
ATGTTAGAGGGCCAGACGCACCGCACTTAACCTCCCATCCACCTTCGCAA
CACGCAGCTATAGGAGGTGCTCCCAAGAGGTCTATCGAGGAAATGCTCAA
AGACAGAGAACTGGTGACACCCAACGCAGAGGGGTGGATGTTGGCGTGGT
CCAAGCGCGAAAAACGCCTCTACTATTTTAATATTAAGACAAATGTGGCA
GTATGGACTGCCCCCCCAGGCTTACCGGCCATAAACGAGGACACGTAA

Coding sequence (CDS) from alignment at CM002461.1:430244..433441-

>rna3444 ID=rna3444|Name=rna3444|organism=Nannochloropsis gaditana|type=CDS|length=3198bp|location=Sequence derived from alignment at CM002461.1:430244..433441- (Nannochloropsis gaditana)
ATGCTCGTTTGTTTCATTTTGGATGTAAATGCCAGCATGGGGCACCGAAG
CCCCCCCAGTGGGCCTCATGCAACAACGAACCTGCGCGGGGCAGGACTAA
GCTCGTTTGAGTGGGCCAAGGCCGCAGTCGAGTACTTCATCAAAGCACGG
CAAAAAACCAATATGAAAGATCAGTACTTTTTGGTTACGACCGAAGAAGG
GCCTGGATGCGTAAAGATCTCATGGGGTGATTCTTTACAGCGTTTCGACG
ACAACCTGCGCCTTCTTGCTCCTTTGCCTGCAGACGGCTCGAAGGGAGGT
ACTAATGTAGGTCATGCGCTATCTATGGCCTTCGCCTTGCTGAATCAGTA
CCGTCTGCAGCATGGTATAGATAATTATGGGCAGGGTCGTTGCCCCTGGC
TTGTTGAACCCGGATGCTGTCTGCTGTTTACCGGCGGAAACAGCTCGCGT
CCGACCTCCTCTTCTGTCCAAAAAGCGATAGGACCGGTATCACCTTTTGG
AGGCGATGCAGAGGCGCCCGCTCCAAGCATGACGTTGCAGCTCACGTGCT
CGGCACATGATTTGACTCGAGATCCTTATCGGTGGGATCAGCGCTTCTTC
CCCTTCATCATCCACCACTCTCCGTCCCGTCCACTCGCAGACAGCAGCAG
TCTCGACGATTCCAAAAAGAGGGAAGAGGGCTCCAGTACAACGCCTTCTC
CTGTCTCCACACAAATTCCCTACTTCGCTGTCTTCAAGGCACTGGCGGAC
GCGACGGGTGGCTACTGCAGCGTGAGCGAGAGTCTAATGGGGCTAACACT
GAACACGGACCTCGTCATGCACAAACTCGCCTTCGTCGGACCCATGGTCG
TGCTGGCTCCCGATCTGGGCGCCGAGACGTGCGGACACGCCACTAAAAGC
GCTCAGGCGCAGTCTCGAGCACAGGAGCAGGAGGCGGGACGACAGGGTCA
GTCGCAAGTGGCCCTCTATCCGCCAGAAACCTGCGGCGAGGCCTTCCATT
CCCCCCATTTGACCTCACCCGCCCATGGTGCCGACCCCATCTCCTGTGCT
GCTGCCGTACGGGCTATTCTATGCCTGAATCATGAGTCAGCTGGGTTCAG
CTGGCCTATTCCGGAGGCTTTTTGGGTGGACCGGACGCTCGAACATCTCC
CCAAACGCGACGCTCACCCTATCCTGCTCTACAGCCGGCTTGCGACTGAC
TCAACGGATGCGGCGCTAGCCTCGCTCACCCGGCTAGAGGCACAGGGCCT
GACTATGGATAGGTACCCTCTGGAATGGTGCGGGGGGGGGGCGGGTGCTG
CCCCCTCCGGCGGGGGGCTGCGGATGACCCGTGGGATGCGGTGGCCGGTG
TATTTGATGGGCAGCGGGCGGATGAAGGGCAGCCGGGGCTGTCCGTTCGG
GTTCTTGGAGGCCTCCGATGTGGCGGGGAGGGTGACCTTAGTCTTGCTCC
CCTACGACTACCCCAAACTGGTGGAGCTCGTACAAGTGGCTGTGGAGGGA
GGGTCCGCCTCCGGGCATTTGACCTCCCTCCCGGTCAAATGGCGCCCAGA
GTTCAACAGCTTCCTGGCTCAGACTCCGCCGTACTACTTTTCGGCCCTTC
GCAGGTGTCTCAAAAAGGTGGGGCTGCACACCCAGGTTCCCGAGCAGAAG
ACGGGAGGGCTCAGCCAGCTTGTGATAAAGCGGTTGCAGCGTATCCGAGA
GCAGGCGCGGGCGGAGAATCAGAGGTATGAGATGAGTCGAAGAGAGCATC
CACATAATCGAGGATTGGAATTTTCCGGGGACATGGGCACCGGGGCGTCC
GGAAGGGACGGACTGGAGGGGGGGGGCAGCTACCTCGCGGGGGGTAAGGG
GAATGGGGAAGAGGGGAGAGAGACGAGCGAAGAAGGGGCAAAAAGCCAAG
ACGAAAGGCTCTTTGATCCGAGTAAGAGCCTGCTTTCCATGTGGGAGGGG
CTACGTCAGGGCCTGTTCGGGGAAGGGGACCACGTCATATCGGGGCTTTA
CGTGAGGGGCTTTCAGAGTTGGCAGGGAGCCTGCGGGCAGCCCAAAAACG
GCCGGCGGCGGCCGGAGGAATGGATGCTCTTGCAAGAAGTCGGCGCGTTG
CAGATGCCAGAGATTCCCATTAACGAGATGGGCGCCTACAGTGAGAGGTT
GCTGCAGATGGAGGTGTTCAGAGACCCGCTGGACGAGTACGACCCAGACG
ATGACACCCCCGAGGCCTGGAAGCAGCGCAAACTCGCCGTAAACTTTGGC
AATCCCTTTCGACGACCGCGACAGCACCATGTACCCCATGTGGAAGCTCA
GCAGGCAGGAGACGGGAAGGACGATGTTGGGCGTTTGCCCTCTGCCGAGG
CGGACAATGAGGCGGAGGTCCTGGGTCCGCACTCCTCGCTAGGGGAGGAC
CTGCCGGAAAAATGGGGAAAGGGTGATGAAGCCTTTGTGTACGGCAGCGA
CGCATGGCCGGGCGGGGTCCAAAGGAGGGCGGAGGGGGAGGACGGGTCGG
CTTTACTAGCACCAAGCACTGCCGAGCAGCCTCATCGAAAGCGACGGCGT
CTGAACGAGCTGCCCCCCTTGCCAACAGGTCGCCCGGTCCCCAAGCGGCA
TCGGTCGAGAATGGACAGGAAGACGACACCGAGGGCGGCGCCGCCCGCGA
GGAGCGTGGGCACGGTGCCTACCGCCATGTCCTCCCCGCCTCTGTCGCCT
CTGCCAGGTCCTCTGGCACCTCTCACGCCGGAGGAGAATGACCATTGGAG
TGACAGAGTGGCTGAAGAGGGGATTTCAGAGACGAGGAGGAAAGAAGACC
CTGTCGCCGTAGACACAGGGGGAAGCTTGGTTGGGCCTGGCGCGGGTGTC
GCCGCCTCCGAGGCTGTAACTTCTCTTGAGAGGAACAGCAGCAACGCGCC
CCACAAGATCACTCTACCGGGAGCTAGCACGATTGATCCGACAGTGTCAA
ATGTTAGAGGGCCAGACGCACCGCACTTAACCTCCCATCCACCTTCGCAA
CACGCAGCTATAGGAGGTGCTCCCAAGAGGTCTATCGAGGAAATGCTCAA
AGACAGAGAACTGGTGACACCCAACGCAGAGGGGTGGATGTTGGCGTGGT
CCAAGCGCGAAAAACGCCTCTACTATTTTAATATTAAGACAAATGTGGCA
GTATGGACTGCCCCCCCAGGCTTACCGGCCATAAACGAGGACACGTAA

Synonyms

Publications