EWM27258.1, cds3435 (CDS) Nannochloropsis gaditana

Overview
NameEWM27258.1
Unique Namecds3435
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002461.1:430244..433441 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM27258.1
Producttype a von willebrand factor domain-containing protein
Orig transcript idgnl|cribi|Naga_100038g43.7713.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002461.1supercontigCM002461.1:430244..433441 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR002035VWF_A
IPR001202WW_dom
Homology
BLAST of EWM27258.1 vs. NCBI_GenBank
Match: gi|585109439|gb|EWM27258.1| (type a von willebrand factor domain-containing protein [Nannochloropsis gaditana])

HSP 1 Score: 2187.15 bits (5666), Expect = 0.000e+0
Identity = 1065/1065 (100.00%), Postives = 1065/1065 (100.00%), Query Frame = 0
Query:    1 MLVCFILDVNASMGHRSPPSGPHATTNLRGAGLSSFEWAKAAVEYFIKARQKTNMKDQYFLVTTEEGPGCVKISWGDSLQRFDDNLRLLAPLPADGSKGGTNVGHALSMAFALLNQYRLQHGIDNYGQGRCPWLVEPGCCLLFTGGNSSRPTSSSVQKAIGPVSPFGGDAEAPAPSMTLQLTCSAHDLTRDPYRWDQRFFPFIIHHSPSRPLADSSSLDDSKKREEGSSTTPSPVSTQIPYFAVFKALADATGGYCSVSESLMGLTLNTDLVMHKLAFVGPMVVLAPDLGAETCGHATKSAQAQSRAQEQEAGRQGQSQVALYPPETCGEAFHSPHLTSPAHGADPISCAAAVRAILCLNHESAGFSWPIPEAFWVDRTLEHLPKRDAHPILLYSRLATDSTDAALASLTRLEAQGLTMDRYPLEWCGGGAGAAPSGGGLRMTRGMRWPVYLMGSGRMKGSRGCPFGFLEASDVAGRVTLVLLPYDYPKLVELVQVAVEGGSASGHLTSLPVKWRPEFNSFLAQTPPYYFSALRRCLKKVGLHTQVPEQKTGGLSQLVIKRLQRIREQARAENQRYEMSRREHPHNRGLEFSGDMGTGASGRDGLEGGGSYLAGGKGNGEEGRETSEEGAKSQDERLFDPSKSLLSMWEGLRQGLFGEGDHVISGLYVRGFQSWQGACGQPKNGRRRPEEWMLLQEVGALQMPEIPINEMGAYSERLLQMEVFRDPLDEYDPDDDTPEAWKQRKLAVNFGNPFRRPRQHHVPHVEAQQAGDGKDDVGRLPSAEADNEAEVLGPHSSLGEDLPEKWGKGDEAFVYGSDAWPGGVQRRAEGEDGSALLAPSTAEQPHRKRRRLNELPPLPTGRPVPKRHRSRMDRKTTPRAAPPARSVGTVPTAMSSPPLSPLPGPLAPLTPEENDHWSDRVAEEGISETRRKEDPVAVDTGGSLVGPGAGVAASEAVTSLERNSSNAPHKITLPGASTIDPTVSNVRGPDAPHLTSHPPSQHAAIGGAPKRSIEEMLKDRELVTPNAEGWMLAWSKREKRLYYFNIKTNVAVWTAPPGLPAINEDT 1065
            MLVCFILDVNASMGHRSPPSGPHATTNLRGAGLSSFEWAKAAVEYFIKARQKTNMKDQYFLVTTEEGPGCVKISWGDSLQRFDDNLRLLAPLPADGSKGGTNVGHALSMAFALLNQYRLQHGIDNYGQGRCPWLVEPGCCLLFTGGNSSRPTSSSVQKAIGPVSPFGGDAEAPAPSMTLQLTCSAHDLTRDPYRWDQRFFPFIIHHSPSRPLADSSSLDDSKKREEGSSTTPSPVSTQIPYFAVFKALADATGGYCSVSESLMGLTLNTDLVMHKLAFVGPMVVLAPDLGAETCGHATKSAQAQSRAQEQEAGRQGQSQVALYPPETCGEAFHSPHLTSPAHGADPISCAAAVRAILCLNHESAGFSWPIPEAFWVDRTLEHLPKRDAHPILLYSRLATDSTDAALASLTRLEAQGLTMDRYPLEWCGGGAGAAPSGGGLRMTRGMRWPVYLMGSGRMKGSRGCPFGFLEASDVAGRVTLVLLPYDYPKLVELVQVAVEGGSASGHLTSLPVKWRPEFNSFLAQTPPYYFSALRRCLKKVGLHTQVPEQKTGGLSQLVIKRLQRIREQARAENQRYEMSRREHPHNRGLEFSGDMGTGASGRDGLEGGGSYLAGGKGNGEEGRETSEEGAKSQDERLFDPSKSLLSMWEGLRQGLFGEGDHVISGLYVRGFQSWQGACGQPKNGRRRPEEWMLLQEVGALQMPEIPINEMGAYSERLLQMEVFRDPLDEYDPDDDTPEAWKQRKLAVNFGNPFRRPRQHHVPHVEAQQAGDGKDDVGRLPSAEADNEAEVLGPHSSLGEDLPEKWGKGDEAFVYGSDAWPGGVQRRAEGEDGSALLAPSTAEQPHRKRRRLNELPPLPTGRPVPKRHRSRMDRKTTPRAAPPARSVGTVPTAMSSPPLSPLPGPLAPLTPEENDHWSDRVAEEGISETRRKEDPVAVDTGGSLVGPGAGVAASEAVTSLERNSSNAPHKITLPGASTIDPTVSNVRGPDAPHLTSHPPSQHAAIGGAPKRSIEEMLKDRELVTPNAEGWMLAWSKREKRLYYFNIKTNVAVWTAPPGLPAINEDT
Sbjct:    1 MLVCFILDVNASMGHRSPPSGPHATTNLRGAGLSSFEWAKAAVEYFIKARQKTNMKDQYFLVTTEEGPGCVKISWGDSLQRFDDNLRLLAPLPADGSKGGTNVGHALSMAFALLNQYRLQHGIDNYGQGRCPWLVEPGCCLLFTGGNSSRPTSSSVQKAIGPVSPFGGDAEAPAPSMTLQLTCSAHDLTRDPYRWDQRFFPFIIHHSPSRPLADSSSLDDSKKREEGSSTTPSPVSTQIPYFAVFKALADATGGYCSVSESLMGLTLNTDLVMHKLAFVGPMVVLAPDLGAETCGHATKSAQAQSRAQEQEAGRQGQSQVALYPPETCGEAFHSPHLTSPAHGADPISCAAAVRAILCLNHESAGFSWPIPEAFWVDRTLEHLPKRDAHPILLYSRLATDSTDAALASLTRLEAQGLTMDRYPLEWCGGGAGAAPSGGGLRMTRGMRWPVYLMGSGRMKGSRGCPFGFLEASDVAGRVTLVLLPYDYPKLVELVQVAVEGGSASGHLTSLPVKWRPEFNSFLAQTPPYYFSALRRCLKKVGLHTQVPEQKTGGLSQLVIKRLQRIREQARAENQRYEMSRREHPHNRGLEFSGDMGTGASGRDGLEGGGSYLAGGKGNGEEGRETSEEGAKSQDERLFDPSKSLLSMWEGLRQGLFGEGDHVISGLYVRGFQSWQGACGQPKNGRRRPEEWMLLQEVGALQMPEIPINEMGAYSERLLQMEVFRDPLDEYDPDDDTPEAWKQRKLAVNFGNPFRRPRQHHVPHVEAQQAGDGKDDVGRLPSAEADNEAEVLGPHSSLGEDLPEKWGKGDEAFVYGSDAWPGGVQRRAEGEDGSALLAPSTAEQPHRKRRRLNELPPLPTGRPVPKRHRSRMDRKTTPRAAPPARSVGTVPTAMSSPPLSPLPGPLAPLTPEENDHWSDRVAEEGISETRRKEDPVAVDTGGSLVGPGAGVAASEAVTSLERNSSNAPHKITLPGASTIDPTVSNVRGPDAPHLTSHPPSQHAAIGGAPKRSIEEMLKDRELVTPNAEGWMLAWSKREKRLYYFNIKTNVAVWTAPPGLPAINEDT 1065          
BLAST of EWM27258.1 vs. NCBI_GenBank
Match: gi|553180315|ref|XP_005853384.1| (type a von willebrand factor domain-containing protein, partial [Nannochloropsis gaditana CCMP526] >gi|422295677|gb|EKU22976.1| type a von willebrand factor domain-containing protein, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 644.425 bits (1661), Expect = 0.000e+0
Identity = 311/311 (100.00%), Postives = 311/311 (100.00%), Query Frame = 0
Query:   96 GSKGGTNVGHALSMAFALLNQYRLQHGIDNYGQGRCPWLVEPGCCLLFTGGNSSRPTSSSVQKAIGPVSPFGGDAEAPAPSMTLQLTCSAHDLTRDPYRWDQRFFPFIIHHSPSRPLADSSSLDDSKKREEGSSTTPSPVSTQIPYFAVFKALADATGGYCSVSESLMGLTLNTDLVMHKLAFVGPMVVLAPDLGAETCGHATKSAQAQSRAQEQEAGRQGQSQVALYPPETCGEAFHSPHLTSPAHGADPISCAAAVRAILCLNHESAGFSWPIPEAFWVDRTLEHLPKRDAHPILLYSRLATDSTDAAL 406
            GSKGGTNVGHALSMAFALLNQYRLQHGIDNYGQGRCPWLVEPGCCLLFTGGNSSRPTSSSVQKAIGPVSPFGGDAEAPAPSMTLQLTCSAHDLTRDPYRWDQRFFPFIIHHSPSRPLADSSSLDDSKKREEGSSTTPSPVSTQIPYFAVFKALADATGGYCSVSESLMGLTLNTDLVMHKLAFVGPMVVLAPDLGAETCGHATKSAQAQSRAQEQEAGRQGQSQVALYPPETCGEAFHSPHLTSPAHGADPISCAAAVRAILCLNHESAGFSWPIPEAFWVDRTLEHLPKRDAHPILLYSRLATDSTDAAL
Sbjct:    1 GSKGGTNVGHALSMAFALLNQYRLQHGIDNYGQGRCPWLVEPGCCLLFTGGNSSRPTSSSVQKAIGPVSPFGGDAEAPAPSMTLQLTCSAHDLTRDPYRWDQRFFPFIIHHSPSRPLADSSSLDDSKKREEGSSTTPSPVSTQIPYFAVFKALADATGGYCSVSESLMGLTLNTDLVMHKLAFVGPMVVLAPDLGAETCGHATKSAQAQSRAQEQEAGRQGQSQVALYPPETCGEAFHSPHLTSPAHGADPISCAAAVRAILCLNHESAGFSWPIPEAFWVDRTLEHLPKRDAHPILLYSRLATDSTDAAL 311          
BLAST of EWM27258.1 vs. NCBI_GenBank
Match: gi|926613333|ref|XP_013771674.1| (PREDICTED: integrator complex subunit 6-like [Limulus polyphemus])

HSP 1 Score: 197.978 bits (502), Expect = 1.465e-48
Identity = 169/590 (28.64%), Postives = 257/590 (43.56%), Query Frame = 0
Query:    2 LVCFILDVNASMGHRSPPSGPHATTNLRGAGLSSFEWAKAAVEYFIKARQKTNMK--DQYFLVTTEEGPGCVKISWGDSLQRFDDNLRLLAPLPADGSKGGTNVGHALSMAFALLNQYRLQHGIDNYGQGRCPWLVEPGCCLLFTGGNSSRPTSSSVQKAIGPVSPFGGDAEAPAPSMTLQLTCSAHDLTRDPYRWDQRFFPFIIHHSPSRPLADSSSLDDSKKREEGSSTTP--SPVSTQIPYFAVFKALADATGG--YCSVSESLMGLTLNTDLVMHKLAFVGPMVVLAPD---LGAETCGHATKSAQAQSRAQEQ--EAGRQGQSQVALYPPETCGEAFHSPHLTSPAHGADPISCAAAVRAILCLNHESAGFS---WPIPEAFWVDRTLEHLPKRDAHPILLYSRLATDSTDAALASLTRLEAQGLTMDRYPLEWCGGGAGAAPSGGGL--RMTRGMRWPVYLMGSGRMKGSRGCPFGFLEASDVAGRVTLVLLPYDYPKLVELVQVAVEGGSASGHLTSLPVKWRPEFNSFLAQTPPYYFSALRRCLKKVGLHTQVPEQKTGGLSQLVIKRLQRIREQARAENQR 575
            ++ F++D +ASM  R+            GA  +  + AK AVE FIK RQ+ +    D+Y L+T EE P  VK  W ++   F + L+ L  +      G T +G AL  AF LLN  R+Q GID YGQGRCP+ +EP   ++ T G     + S  Q    P+S   G                  +LT++P+RWDQR F  ++       LA +  ++    R+ GS   P  SP+           A+ + TGG  Y   S  ++   L + +   +   V     + PD   +  E     T+  Q       +   AG+ G  Q    P      A+ S H                 + I        G+S   WPIPE+FW D     LP R AHP+  ++   T+S    +          L  D+Y LE        +P    +  R    + W VY+ GS +     G  FG+L+AS     V L +LPY+YP L+ L+    +      H    P +W+  F S+L   P YY + L+R L+++G  + VPE     LS  ++  L+R++ QA++E ++
Sbjct:    3 IILFLVDTSASMNQRT----------YLGARPTLLDVAKDAVERFIKIRQRDSASRGDRYMLLTFEEPPVHVKAGWKENHATFMNELKNLNAI------GVTTMGPALRNAFDLLNVNRMQTGIDTYGQGRCPFYLEPSIIVVITDGGKLSSSDSQHQNLNLPMSSMPGS-----------------ELTKEPFRWDQRLFALVLR------LAGTPYME----RDSGSVVPPDSSPID----------AMCEVTGGRSYAVTSHRVLMQCLESLVQKIQSGVVINFEKIGPDPPPVINEVYSETTEDKQINETPNHKVPAAGQNGLGQQT--PHSITSTAWQSSH-----------------KLIYVQRSAQKGYSVGHWPIPESFWPDLNSPALPPRTAHPVFKFT--CTNSEPMVI--------DNLPFDKYELE-------PSPLTQYILSRKQPTVAWQVYVSGSHK-SSELGHSFGYLKASTTLTCVNLFVLPYNYPTLLPLLDEFFK-----VHRCKAPKEWKQNFESYLKNMPLYYAAPLKRALQRMGAPSLVPENMENCLSYSILNYLKRLKNQAKSEYEK 497          
BLAST of EWM27258.1 vs. NCBI_GenBank
Match: gi|762145757|ref|XP_011456158.1| (PREDICTED: integrator complex subunit 6 isoform X3 [Crassostrea gigas] >gi|405977527|gb|EKC41970.1| Integrator complex subunit 6 [Crassostrea gigas])

HSP 1 Score: 193.741 bits (491), Expect = 3.889e-47
Identity = 160/583 (27.44%), Postives = 258/583 (44.25%), Query Frame = 0
Query:    2 LVCFILDVNASMGHRSPPSGPHATTNLRGAGLSSFEWAKAAVEYFIKARQKT-NMK-DQYFLVTTEEGPGCVKISWGDSLQRFDDNLRLLAPLPADGSKGGTNVGHALSMAFALLNQYRLQHGIDNYGQGRCPWLVEPGCCLLFTGGNSSRPTSSSVQKAIGPVSPFGGDAEAPAPSMTLQLTCSAHDLTRDPYRWDQRFFPFIIHHSPSRPLADSSSLDDSKKREEGSSTTPSPVSTQIPYFAVFKALADATGG--YCSVSESLMGLTLNTDLVMHKLAFVGPMVVLAPDLGAETCGHATKSAQAQSRAQEQEAGRQGQSQVALYPPETCGEAFHSPHLTSPAHG-ADPISCAAAVRAILCLNHES-AGFS---WPIPEAFWVDRTLEHLPKRDAHPILLYSRLATDSTDAALASLTRLEAQGLTMDRYPLEWCGGGAGAAPSGGGLRMTRGMRWPVYLMGSGRMKGSRGCPFGFLEASDVAGRVTLVLLPYDYPKLVELVQVAVEGGSASGHLTSLPVKWRPEFNSFLAQTPPYYFSALRRCLKKVGLHTQVPEQKTGGLSQLVIKRLQRIREQARAENQR 575
            ++ F++D +ASM  R+              G S  + AKA+VE F+K R +  N + D+Y L+T E+ P  +K  W +S   F + L+ L       ++G T +G AL  AF LLN  R+Q GID YGQGRCP+ +EP   ++ T G              G ++   G    P  ++ +       +LT++P+RWDQR F  ++    + P+             + +++T  P +   P      A+ D TGG  Y   ++ ++   L +  ++ K+   G +V+       E  G    + + +        G   ++Q    PP    E        SP  G + P +     R ++ +   +  G+S   WPIPEAFW D T   LP R AHP++ +     +          + E +   + +Y LE               R      W V++ GS +     G PFG+L+AS     V L L+PY+YP L+ L+    +      H      KWR +F+++L   P YY   L+R L ++G    VP+     LS  VI  L++++ QA+ E  R
Sbjct:    3 IILFLVDTSASMNQRT------------YLGTSLIDIAKASVETFMKIRSRDPNCRWDRYMLLTFEDPPANIKAGWKESHATFVNELKNLQ------TQGLTLMGPALKHAFDLLNINRMQTGIDTYGQGRCPFYLEPAVIIVITDG--------------GKLTTMNG--VQPEINLPMNSVVPGSELTKEPFRWDQRIFGLVLRLPGNVPV-------------DMTTSTYIPSAESHP----LDAMCDVTGGRSYAVHTQKMLNGALES--LVQKVQ--GGVVI-----NFEKIGPDPPTIEVKVENGLDSNGNSKENQDINMPPTIKLEMEEERKANSPMTGLSIPNNSWHNCRKLIYVPRSAQKGYSVGHWPIPEAFWPDTTNSTLPPRSAHPVVKFYCTPCEPMVIGNLPFDKYELEPSPLTQYILE---------------RRQPNSCWQVFINGSAKY-SDVGHPFGYLKASSTLSCVNLFLMPYNYPVLLPLLDELFK-----VHKLKPTQKWRSQFDTYLKTMPSYYAGPLKRALARMGAPNLVPDNMDNSLSYSVITYLKKLKNQAKIEMDR 504          
BLAST of EWM27258.1 vs. NCBI_GenBank
Match: gi|762145755|ref|XP_011456157.1| (PREDICTED: integrator complex subunit 6 isoform X2 [Crassostrea gigas])

HSP 1 Score: 193.741 bits (491), Expect = 3.900e-47
Identity = 160/583 (27.44%), Postives = 258/583 (44.25%), Query Frame = 0
Query:    2 LVCFILDVNASMGHRSPPSGPHATTNLRGAGLSSFEWAKAAVEYFIKARQKT-NMK-DQYFLVTTEEGPGCVKISWGDSLQRFDDNLRLLAPLPADGSKGGTNVGHALSMAFALLNQYRLQHGIDNYGQGRCPWLVEPGCCLLFTGGNSSRPTSSSVQKAIGPVSPFGGDAEAPAPSMTLQLTCSAHDLTRDPYRWDQRFFPFIIHHSPSRPLADSSSLDDSKKREEGSSTTPSPVSTQIPYFAVFKALADATGG--YCSVSESLMGLTLNTDLVMHKLAFVGPMVVLAPDLGAETCGHATKSAQAQSRAQEQEAGRQGQSQVALYPPETCGEAFHSPHLTSPAHG-ADPISCAAAVRAILCLNHES-AGFS---WPIPEAFWVDRTLEHLPKRDAHPILLYSRLATDSTDAALASLTRLEAQGLTMDRYPLEWCGGGAGAAPSGGGLRMTRGMRWPVYLMGSGRMKGSRGCPFGFLEASDVAGRVTLVLLPYDYPKLVELVQVAVEGGSASGHLTSLPVKWRPEFNSFLAQTPPYYFSALRRCLKKVGLHTQVPEQKTGGLSQLVIKRLQRIREQARAENQR 575
            ++ F++D +ASM  R+              G S  + AKA+VE F+K R +  N + D+Y L+T E+ P  +K  W +S   F + L+ L       ++G T +G AL  AF LLN  R+Q GID YGQGRCP+ +EP   ++ T G              G ++   G    P  ++ +       +LT++P+RWDQR F  ++    + P+             + +++T  P +   P      A+ D TGG  Y   ++ ++   L +  ++ K+   G +V+       E  G    + + +        G   ++Q    PP    E        SP  G + P +     R ++ +   +  G+S   WPIPEAFW D T   LP R AHP++ +     +          + E +   + +Y LE               R      W V++ GS +     G PFG+L+AS     V L L+PY+YP L+ L+    +      H      KWR +F+++L   P YY   L+R L ++G    VP+     LS  VI  L++++ QA+ E  R
Sbjct:    3 IILFLVDTSASMNQRT------------YLGTSLIDIAKASVETFMKIRSRDPNCRWDRYMLLTFEDPPANIKAGWKESHATFVNELKNLQ------TQGLTLMGPALKHAFDLLNINRMQTGIDTYGQGRCPFYLEPAVIIVITDG--------------GKLTTMNG--VQPEINLPMNSVVPGSELTKEPFRWDQRIFGLVLRLPGNVPV-------------DMTTSTYIPSAESHP----LDAMCDVTGGRSYAVHTQKMLNGALES--LVQKVQ--GGVVI-----NFEKIGPDPPTIEVKVENGLDSNGNSKENQDINMPPTIKLEMEEERKANSPMTGLSIPNNSWHNCRKLIYVPRSAQKGYSVGHWPIPEAFWPDTTNSTLPPRSAHPVVKFYCTPCEPMVIGNLPFDKYELEPSPLTQYILE---------------RRQPNSCWQVFINGSAKY-SDVGHPFGYLKASSTLSCVNLFLMPYNYPVLLPLLDELFK-----VHKLKPTQKWRSQFDTYLKTMPSYYAGPLKRALARMGAPNLVPDNMDNSLSYSVITYLKKLKNQAKIEMDR 504          
BLAST of EWM27258.1 vs. NCBI_GenBank
Match: gi|762145753|ref|XP_011456156.1| (PREDICTED: integrator complex subunit 6 isoform X1 [Crassostrea gigas])

HSP 1 Score: 193.741 bits (491), Expect = 4.034e-47
Identity = 160/583 (27.44%), Postives = 258/583 (44.25%), Query Frame = 0
Query:    2 LVCFILDVNASMGHRSPPSGPHATTNLRGAGLSSFEWAKAAVEYFIKARQKT-NMK-DQYFLVTTEEGPGCVKISWGDSLQRFDDNLRLLAPLPADGSKGGTNVGHALSMAFALLNQYRLQHGIDNYGQGRCPWLVEPGCCLLFTGGNSSRPTSSSVQKAIGPVSPFGGDAEAPAPSMTLQLTCSAHDLTRDPYRWDQRFFPFIIHHSPSRPLADSSSLDDSKKREEGSSTTPSPVSTQIPYFAVFKALADATGG--YCSVSESLMGLTLNTDLVMHKLAFVGPMVVLAPDLGAETCGHATKSAQAQSRAQEQEAGRQGQSQVALYPPETCGEAFHSPHLTSPAHG-ADPISCAAAVRAILCLNHES-AGFS---WPIPEAFWVDRTLEHLPKRDAHPILLYSRLATDSTDAALASLTRLEAQGLTMDRYPLEWCGGGAGAAPSGGGLRMTRGMRWPVYLMGSGRMKGSRGCPFGFLEASDVAGRVTLVLLPYDYPKLVELVQVAVEGGSASGHLTSLPVKWRPEFNSFLAQTPPYYFSALRRCLKKVGLHTQVPEQKTGGLSQLVIKRLQRIREQARAENQR 575
            ++ F++D +ASM  R+              G S  + AKA+VE F+K R +  N + D+Y L+T E+ P  +K  W +S   F + L+ L       ++G T +G AL  AF LLN  R+Q GID YGQGRCP+ +EP   ++ T G              G ++   G    P  ++ +       +LT++P+RWDQR F  ++    + P+             + +++T  P +   P      A+ D TGG  Y   ++ ++   L +  ++ K+   G +V+       E  G    + + +        G   ++Q    PP    E        SP  G + P +     R ++ +   +  G+S   WPIPEAFW D T   LP R AHP++ +     +          + E +   + +Y LE               R      W V++ GS +     G PFG+L+AS     V L L+PY+YP L+ L+    +      H      KWR +F+++L   P YY   L+R L ++G    VP+     LS  VI  L++++ QA+ E  R
Sbjct:    3 IILFLVDTSASMNQRT------------YLGTSLIDIAKASVETFMKIRSRDPNCRWDRYMLLTFEDPPANIKAGWKESHATFVNELKNLQ------TQGLTLMGPALKHAFDLLNINRMQTGIDTYGQGRCPFYLEPAVIIVITDG--------------GKLTTMNG--VQPEINLPMNSVVPGSELTKEPFRWDQRIFGLVLRLPGNVPV-------------DMTTSTYIPSAESHP----LDAMCDVTGGRSYAVHTQKMLNGALES--LVQKVQ--GGVVI-----NFEKIGPDPPTIEVKVENGLDSNGNSKENQDINMPPTIKLEMEEERKANSPMTGLSIPNNSWHNCRKLIYVPRSAQKGYSVGHWPIPEAFWPDTTNSTLPPRSAHPVVKFYCTPCEPMVIGNLPFDKYELEPSPLTQYILE---------------RRQPNSCWQVFINGSAKY-SDVGHPFGYLKASSTLSCVNLFLMPYNYPVLLPLLDELFK-----VHKLKPTQKWRSQFDTYLKTMPSYYAGPLKRALARMGAPNLVPDNMDNSLSYSVITYLKKLKNQAKIEMDR 504          
BLAST of EWM27258.1 vs. NCBI_GenBank
Match: gi|762145759|ref|XP_011456159.1| (PREDICTED: integrator complex subunit 6 isoform X4 [Crassostrea gigas])

HSP 1 Score: 193.741 bits (491), Expect = 4.112e-47
Identity = 160/583 (27.44%), Postives = 258/583 (44.25%), Query Frame = 0
Query:    2 LVCFILDVNASMGHRSPPSGPHATTNLRGAGLSSFEWAKAAVEYFIKARQKT-NMK-DQYFLVTTEEGPGCVKISWGDSLQRFDDNLRLLAPLPADGSKGGTNVGHALSMAFALLNQYRLQHGIDNYGQGRCPWLVEPGCCLLFTGGNSSRPTSSSVQKAIGPVSPFGGDAEAPAPSMTLQLTCSAHDLTRDPYRWDQRFFPFIIHHSPSRPLADSSSLDDSKKREEGSSTTPSPVSTQIPYFAVFKALADATGG--YCSVSESLMGLTLNTDLVMHKLAFVGPMVVLAPDLGAETCGHATKSAQAQSRAQEQEAGRQGQSQVALYPPETCGEAFHSPHLTSPAHG-ADPISCAAAVRAILCLNHES-AGFS---WPIPEAFWVDRTLEHLPKRDAHPILLYSRLATDSTDAALASLTRLEAQGLTMDRYPLEWCGGGAGAAPSGGGLRMTRGMRWPVYLMGSGRMKGSRGCPFGFLEASDVAGRVTLVLLPYDYPKLVELVQVAVEGGSASGHLTSLPVKWRPEFNSFLAQTPPYYFSALRRCLKKVGLHTQVPEQKTGGLSQLVIKRLQRIREQARAENQR 575
            ++ F++D +ASM  R+              G S  + AKA+VE F+K R +  N + D+Y L+T E+ P  +K  W +S   F + L+ L       ++G T +G AL  AF LLN  R+Q GID YGQGRCP+ +EP   ++ T G              G ++   G    P  ++ +       +LT++P+RWDQR F  ++    + P+             + +++T  P +   P      A+ D TGG  Y   ++ ++   L +  ++ K+   G +V+       E  G    + + +        G   ++Q    PP    E        SP  G + P +     R ++ +   +  G+S   WPIPEAFW D T   LP R AHP++ +     +          + E +   + +Y LE               R      W V++ GS +     G PFG+L+AS     V L L+PY+YP L+ L+    +      H      KWR +F+++L   P YY   L+R L ++G    VP+     LS  VI  L++++ QA+ E  R
Sbjct:    3 IILFLVDTSASMNQRT------------YLGTSLIDIAKASVETFMKIRSRDPNCRWDRYMLLTFEDPPANIKAGWKESHATFVNELKNLQ------TQGLTLMGPALKHAFDLLNINRMQTGIDTYGQGRCPFYLEPAVIIVITDG--------------GKLTTMNG--VQPEINLPMNSVVPGSELTKEPFRWDQRIFGLVLRLPGNVPV-------------DMTTSTYIPSAESHP----LDAMCDVTGGRSYAVHTQKMLNGALES--LVQKVQ--GGVVI-----NFEKIGPDPPTIEVKVENGLDSNGNSKENQDINMPPTIKLEMEEERKANSPMTGLSIPNNSWHNCRKLIYVPRSAQKGYSVGHWPIPEAFWPDTTNSTLPPRSAHPVVKFYCTPCEPMVIGNLPFDKYELEPSPLTQYILE---------------RRQPNSCWQVFINGSAKY-SDVGHPFGYLKASSTLSCVNLFLMPYNYPVLLPLLDELFK-----VHKLKPTQKWRSQFDTYLKTMPSYYAGPLKRALARMGAPNLVPDNMDNSLSYSVITYLKKLKNQAKIEMDR 504          
BLAST of EWM27258.1 vs. NCBI_GenBank
Match: gi|1192742592|ref|XP_021000105.1| (integrator complex subunit 6 [Parasteatoda tepidariorum])

HSP 1 Score: 192.971 bits (489), Expect = 8.624e-47
Identity = 209/787 (26.56%), Postives = 334/787 (42.44%), Query Frame = 0
Query:    2 LVCFILDVNASMGHRSPPSGPHATTNLRGAGLSSFEWAKAAVEYFIKARQKTNMK--DQYFLVTTEEGPGCVKISWGDSLQRFDDNLRLLAPLPADGSKGGTNVGHALSMAFALLNQYRLQHGIDNYGQGRCPWLVEPGCCLLFT-GGNSSRPTSSSVQKAIGPVSPFGGDAEAPAPSMTLQLTCSAHDLTRDPYRWDQRFFPFIIHHSPSRPLADSSSLDDSKKREEGSSTTP--SPVSTQIPYFAVFKALADATGG--YCSVSESLMGLTLNTDLVMHKLAFVGPMVVLAPDLGAETCGHATKSAQAQSRAQEQEAGRQGQSQVALYPPETCGEAFHSPHLTSPAHGADPISCAAAVRAILCLNHESAGFS---WPIPEAFWVDRTLEHLPKRDAHPILLYSRLATDSTDAALASLTRLEAQGLTMDRYPLEWCGGGAGAAPSGGGL--RMTRGMRWPVYLMGSGRMKGSRGCPFGFLEASDVAGRVTLVLLPYDYPKLVELVQVAVEGGSASGHLTSLPVKWRPEFNSFLAQTPPYYFSALRRCLKKVGLHTQVPEQKTGGLSQLVIKRLQRIREQARAENQRYEMSRREHPHNRGLEFSGDMGTGASGRDGLEGGGSYLAGGKGNGEEGRETSEEGAKSQ-DERLFDPSKSLLSMWEGLRQGLFGEGDHVISGLYVRG----FQSWQGACGQPKNG------RRRPEEWMLLQEVGAL----QMPEIPINEMGAYSERLLQMEVFRDPLDEYDPDDDTPEAWKQRKLAVNFGNPFRRPRQHHV 761
            ++ F++D +ASM  R+            GA  +  + AK AVE FIK RQ+ +    D+Y L+T EE P  +K  W +SL  F   L+ L       S G T +G AL  AF LLN  R+Q GID Y QGRCP+ +EP   ++ T GG  S  T+  VQ+ +                + +  +    +LT++P+RWDQR F  ++  +   P AD         RE  S   P  SPV           A+ D TGG  Y  +S+ ++   L +  ++ KL   G +V+       E  G        +   +E+   +      +L PP        SP + + ++ A   SC    + I        G++   WP+PE+FW D++   LP R AHPI+ +S           A+   +    L  D+Y LE        +P    +  R    + W V++  S +       PFG+L+AS     V L ++PY+Y      V + +       H    P +W+ +F+++L   P YY + L+R L+++G    VP+     LS  V+  L+R++ QA+ E ++                   +GT  +  DG+          + N    R     GA ++  E    P   +   +  L+  +  + +H +  LYV+      +S++ A   P+N       R R            L    QM  +P+++MG Y E L   + F  PL E        E+   R+    FGNPF+  ++  V
Sbjct:    3 IILFLIDTSASMNQRT----------YLGARPTLLDVAKDAVERFIKIRQRDSASRGDRYMLLTFEEPPANIKAGWKESLATFMTELKNLQ------SVGMTTLGAALKYAFDLLNINRMQTGIDTYSQGRCPFYLEPSIIIVITDGGRLS--TTLGVQEELN---------------LPMHSSVPGSELTKEPFRWDQRLFSLVLRLT-GIPPAD---------REPSSVVPPDNSPVD----------AMCDVTGGRSYAVISQRMLMQCLES--LVQKLQ--GGVVI-----NFEKIGPDPPPLNGEEMVEERSTLKPASP--SLNPPTPAQNGRSSPAVFNMSNNASWQSCR---KLIYVQRSAQKGYTVGHWPLPESFWPDQSSPALPPRTAHPIVKFS----------CANSEPMVIDNLPFDKYELE-------PSPLTQYILSRKQPTVAWQVFVSSSYK-NSDVDYPFGYLKASTSLTCVNLFVMPYNY-----PVLLPLLDDLFKVHRCKPPREWKQQFDNYLKNMPLYYAAPLKRALQRMGAPNLVPDTMENCLSYSVLNYLKRLKNQAKTEFEK---------------LISTVGTKKTISDGI----------RVNPAPQRPF---GASTKLSEMNLTPHLVMNDRFTALKNDI-NDFNHFV--LYVKDKDIKHESYRNAYDIPRNNILDQLARMRSNFLQCSLSHTRLQDEDQMHSLPVSQMGNYQEYL---KRFTPPLREI-------ESIPVRQHM--FGNPFKIDKRMMV 656          
BLAST of EWM27258.1 vs. NCBI_GenBank
Match: gi|913320377|ref|XP_013191301.1| (PREDICTED: integrator complex subunit 6 [Amyelois transitella])

HSP 1 Score: 192.2 bits (487), Expect = 2.196e-46
Identity = 167/603 (27.69%), Postives = 260/603 (43.12%), Query Frame = 0
Query:    2 LVCFILDVNASMGHRSPPSGPHATTNLRGAGLSSFEWAKAAVEYFIKARQKT--NMKDQYFLVTTEEGPGCVKISWGDSLQRFDDNLRLLAPLPADGSKGGTNVGHALSMAFALLNQYRLQHGIDNYGQGRCPWLVEPGCCLLFTGGNSSRPTSSSVQKAIGPVSPFGGDAEAPAPSMTLQLTCSA--HDLTRDPYRWDQRFFPFIIHHSPSRPLADSSSLDDSKKREEGSSTTPSPVSTQIPYFAVFKALADATGG--YCSVSESLMGLTLNTDLVMHKLAFVGPMVVLAPD----------LGAETCGHATKSAQAQSRAQEQEAGRQG----QSQVALYPPETCGEAFHSPHLTSPAHGADPISCAAAVRAILCLNHE--SAGFSWPIPEAFWVDRTLEHLPKRDAHPILLYSRLATDSTDAALASLTRLEAQGLTMDRYPLEWCGGGAGAAPSGGGL--RMTRGMRWPVYLMGSGRMKGSRGCPFGFLEASDVAGRVTLVLLPYDYPKLVELVQVAVEGGSASGHLTSLPVKWRPEFNSFLAQTPPYYFSALRRCLKKVG-----LHTQVPEQKTGGLSQLVIKRLQRIREQARAENQR 575
            ++ F++D +ASM  R+            G   +  + AK AVE F+K RQ++  +  D+Y L+T EE P  +K  W ++L  F + L+ L  L      G T +G AL  AF +LN  R+Q GID YGQGRCP+ +EP   ++ T G              G +S   G  E       L + C     +LTR+P+RWDQR F  ++       LA + ++      E  +   PS  S          A+ + TGG  YC  S  ++   +++ +   +   V     + PD           GAET    T  A        +  GR      Q+ V      +  +A+H              SC   +     +  +  + GF WPIPE+F  D     LP R AHP++ ++ L+ +           +    L  D+Y LE        +P    +  R    + W V++  SG        PFG+L+AS     V L +LPY+YP L+ L+    +      H      +W+  F  +L + P YY + LRR L K+G     L + +PE +   LS  V+  L+R++ QA+ E ++
Sbjct:    3 IIVFLIDTSASMNQRA----------YLGGRPTLLDVAKGAVETFVKVRQRSPESRGDRYMLLTFEEPPANIKAGWKENLATFINELKNLQCL------GLTTMGAALKHAFDVLNINRMQTGIDTYGQGRCPFYLEPSVIVVITDG--------------GKLSSNAGIQE----EFNLPMNCPIPGSELTREPFRWDQRLFSLVLR------LAGTPAV------ERDTGLVPSDSSP-------IDAMCEVTGGRSYCITSHRMLMQCIDSLVQKVQSGVVINFEKIGPDPPPIDGGANRDGAETTDDITHEADKDVDGDGERNGRWNGGPYQAGVTANQGASAPQAWH--------------SCRRLIYVPRTVAQKGFAVGF-WPIPESFRPDPNAPTLPPRSAHPVVKFTCLSHEP----------MVIDNLPFDKYELE-------PSPLTQFILARKQPTICWQVFVANSGCKNNEVSHPFGYLKASTNLSCVNLFVLPYNYPVLLPLLDELFK-----VHRCKPTPEWKQAFQQYLDRMPSYYVAPLRRALTKMGASSPLLQSLIPENQDNSLSFSVLNYLKRLKNQAKIEFEK 515          
BLAST of EWM27258.1 vs. NCBI_GenBank
Match: gi|766921167|ref|XP_011505090.1| (PREDICTED: integrator complex subunit 6-B [Ceratosolen solmsi marchali])

HSP 1 Score: 183.726 bits (465), Expect = 1.451e-43
Identity = 199/812 (24.51%), Postives = 323/812 (39.78%), Query Frame = 0
Query:    2 LVCFILDVNASMGHRSPPSGPHATTNLRGAGLSSFEWAKAAVEYFIKARQKT--NMKDQYFLVTTEEGPGCVKISWGDSLQRFDDNLRLLAPLPADGSKGGTNVGHALSMAFALLNQYRLQHGIDNYGQGRCPWLVEPGCCLLFTGGNSSRPTSSSVQKAIGPVSPFGGDAEAPAPSMTLQLTCSAHDLTRDPYRWDQRFFPFIIHHSPSRPLADSSSLDDSKKREEGSSTTPSPVSTQIPYFAVFKALADATGG--YCSVSESLMGLTLNTDLVMHKLAFVGPMVVLAPD---LGAETCG--HATKSAQAQSRAQEQEAGRQGQSQVALYPPETCGEAFHSPHLTSPAHGADPISCAAAVRAILCLNHESAGFS---WPIPEAFWVDRTLEHLPKRDAHPILLYSRLATDSTDAALASLTRLEAQGLTMDRYPLEWCGGGAGAAPSGGGL--RMTRGMRWPVYLMGSGRMKGSRGCPFGFLEASDVAGRVTLVLLPYDYPKLVELVQVAVEGGSASGHLTSLPVKWRPEFNSFLAQTPPYYFSALRRCLKKVG-----LHTQVPEQKTGGLSQLVIKRLQRIREQARAENQRY--EMSRREHPH--------NRGLE---------FSGDMGTGA--SGRDGLEGGGSYLAGGKGNGEEGRETSEEGAKSQDERLFDPSKSLLSMWEGLRQGLFGEG---DHVISGLYVRGFQSWQGACGQPKNGRRRPEEWMLLQEVGALQMPEIPINEMGAYSERLLQMEVFRDPLDEYDPDDDTPEAWKQRKLAVNFGNPFRRPRQHHVPHVEAQQAG 770
            ++ F++D +ASM  R+            G   +  + AK+AVE F+K RQ++  +  D+Y L+T E+ P  +K  W ++L  F + L+ L  +      G T +G AL  AF +LN  R+Q GID YGQGRCP+ +EP   ++ T G      +   Q    P+         P P           +LT++P+RWDQR F  ++  S +  +   + L          ++  SP+           A+ + TGG  YC  S  +M   +++ +   +   V     + PD   L  E+    H+    + +              + A YP         S     P + A+  +  +  R I        GF+   WPIPE+FW D +   LP R AHP + ++            S   L  + L  D+Y LE        +P    +  R    + W V++  S +     G PFG+L+AS     V L ++PY+YP L+ L+    +      H      +WR +F +++   P YY ++LRR L ++G       T +P+     LS  V+  L+R++  A+ E  R   E+  ++  +        N  LE            D+ + +    RD L     ++ G   N ++ R     GA+S       P KSLL     +R      G     ++   YV                                    +P+++MG Y E L +M     PL E    + TP           FGNPF+  ++  V   +    G
Sbjct:    3 IIVFLIDTSASMNQRA----------YLGGRPTLLDVAKSAVETFVKVRQRSPESRGDRYMLLTFEDTPHNIKAGWKENLATFMNELKNLQCV------GLTTLGTALKNAFDVLNINRMQTGIDTYGQGRCPFYLEPSVIVVITDGGKYTTGNGVHQDFTLPM-------HTPIP---------GSELTKEPFRWDQRLFSLVLRLSGTPAVERDTGL---------VASDASPID----------AMCEVTGGRSYCITSHRMMMQCIDSLVQKVQSGVVINFEKIGPDPLPLANESVNSLHSENDEENEEETGGLTTNGSIAGRNAAYPNANSNSTIGS---MMPNNLANSTAWHSCRRLIYVPRSAQKGFAVGFWPIPESFWPDISASSLPPRSAHPNVKFT----------CTSQEPLVIENLPFDKYELE-------PSPLTQFILARKQPTICWQVFIANSYK-SSEVGHPFGYLKASTNLTCVNLFVMPYNYPVLLPLLDELFK-----VHRLKPSNEWRTQFTNYMRTMPAYYAASLRRALTRMGAPAALAQTLIPDNMDNTLSYSVLNYLKRLKNTAKMEFDRLCNEVISKQVANKSLANGSTNAVLEGLRVTPRATLKKDLLSNSLTDLRDELNKFSGFVVGLVKNHQQQR-----GAQSYRNAFDIPRKSLLDQVVRMRANFLQPGLLHTKLLDDDYVHS----------------------------------MPVSQMGNYQEYLKRMT---PPLREI---ESTPVRQHM------FGNPFKIDKRMMVDEADIDIVG 686          
The following BLAST results are available for this feature:
BLAST of EWM27258.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585109439|gb|EWM27258.1|0.000e+0100.00type a von willebrand factor domain-containing pro... [more]
gi|553180315|ref|XP_005853384.1|0.000e+0100.00type a von willebrand factor domain-containing pro... [more]
gi|926613333|ref|XP_013771674.1|1.465e-4828.64PREDICTED: integrator complex subunit 6-like [Limu... [more]
gi|762145757|ref|XP_011456158.1|3.889e-4727.44PREDICTED: integrator complex subunit 6 isoform X3... [more]
gi|762145755|ref|XP_011456157.1|3.900e-4727.44PREDICTED: integrator complex subunit 6 isoform X2... [more]
gi|762145753|ref|XP_011456156.1|4.034e-4727.44PREDICTED: integrator complex subunit 6 isoform X1... [more]
gi|762145759|ref|XP_011456159.1|4.112e-4727.44PREDICTED: integrator complex subunit 6 isoform X4... [more]
gi|1192742592|ref|XP_021000105.1|8.624e-4726.56integrator complex subunit 6 [Parasteatoda tepidar... [more]
gi|913320377|ref|XP_013191301.1|2.196e-4627.69PREDICTED: integrator complex subunit 6 [Amyelois ... [more]
gi|766921167|ref|XP_011505090.1|1.451e-4324.51PREDICTED: integrator complex subunit 6-B [Ceratos... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna3444rna3444Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications