rna3443, rna3443 (mRNA) Nannochloropsis gaditana

Overview
Namerna3443
Unique Namerna3443
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1176
Alignment locationCM002461.1:428719..429666 -

Link to JBrowse

Properties
Property NameValue
ProductSix-bladed beta-propeller TolB-like protein
Orig transcript idgnl|cribi|Naga_100038g42.7699.mrna
Orig protein idgnl|cribi|Naga_100038g42.7699
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002461.1supercontigCM002461.1:428719..429666 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100038g42gene3317Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM27244.1cds3434Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna3443rna3443-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna3443 ID=rna3443|Name=rna3443|organism=Nannochloropsis gaditana|type=mRNA|length=1176bp
ATGAGCTCACACATGCCTGTCTGTCGAGGAGATCCGGAGGCCGGCGTCGT
CCCGGCCGGGGGCACGGTGGGAAACGAGGAGATGGCGGGTCGGGAGAATG
GGGGGTCGGGAATGTACCGGCTCGCGGAGGACGTGGACGGCAACGGGCGC
GACGAGGGTTGTCAATGGGTCCCTCCGGCGCTGCGGACGTCCTTGGAGCG
GTACAGGTGGCTGGAGATCATCCTCTTGTCTGTCATCGTCATCTTGGCCA
AGGAGGGCTTTGGGAGTGGCGTGAAGAACCATCGACAATACATTCCGCTT
GTCACCCAAGTGCTGCCAGGAGGGGCCGTGGTAGTGCTAGGCAACGCCAC
TGCCTTCTCTTATCCCGTCCGGTTCCGAGAAGGGACTTTGGAGTGCCCGC
CCGTCACCCTGGAGTTCTGCGCGACAAGCCCTGAATCGGCGCTTGCCGAC
CCCTGCTGCGAGTTCATGACCACGGGCGCGAAACCTTTTCAGACGGTCTC
TCACGACGATTTGATATGGATAACGGTGGGATTGCCCCTGATATTGCTGG
TGCTGCGACATCTCTTACTAAAGTGGTACCTTTGCTCCGTGCCAGCCTCA
TCGGCCGATCCTATGTTCTCCTCGGAAGATAAGAGTGCTCTTCGTCCTCT
TTCCGGCCTCCCTTTTGGCTACTCGGCTACCTTTTGCTTGCGAGACGTCC
TCATCGGTCTCTTTTTCAGCCTCGCACTGACCAGAGCCACCACCAACAGC
CTCAAGATGTTGACCTCGCAGCCGCGTCCGAACCATTTTGCCCTCAGGCT
CTTTGCCTCTCTCTCCCCCGACTCGTCTGCAGCCATTCATTACGCGGAGA
GTGCGTGGAAAGCCTGGCCGTCGGGGCACTCGTCCATGTCCATGGCATCG
GGCGCCTTCTTGTCGCTCGTCTTGCTCAGGGACCTGAGGCAGTTTGCAGG
GCCTCTGCAACGGCAGCTCCGCGCATGTTTGGTCATACTGGCCCTCGGTC
CCGTGTATCTTGCTATGTTTGTCGCCGGCACACGAGTGCACGACTACTTC
CACACCACGGCGGACGCAGTGACGGGGTCCGCGTTGGGCTTGCTTTGGGC
AGTGCTCGCTTTCTATCAGGTCGTGCCCGCGGGGGGCCTGGAGGTGCGCG
CGAACCCGCCATTGAAATACCTGTAG
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protein sequence of rna3443

>rna3443-protein ID=rna3443-protein|Name=rna3443|organism=Nannochloropsis gaditana|type=polypeptide|length=315bp
MQILCVLLVGILTLSGLINANLGPPYLYVTMHGGEDKGAVNQVYIYSRAG
HALGEALEEKTDLNELRGMVLWGDSMLLANANRKNSFVAQFQGACLETEK
MKQMRVIVPKDTPGIDHPYGVTTDNSRFLYVSTQGTNAVYRFYLTTGESG
PIAPALAAQGAKQDDFPGLFAQFDPESDGTRGITWHPGRKLLFVANKDIG
VVALNEDGYVKGILDADEPIAVSYCPARDSIFVSSKGDDSVSEWNPHSLK
RMKKWTSHLLAHPAGLACFEGSVFVVSQDEGTILEIDLEGGKVRVLVEDL
PDKGEQIILSHAQSC
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mRNA from alignment at CM002461.1:428719..429666-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna3443 ID=rna3443|Name=rna3443|organism=Nannochloropsis gaditana|type=mRNA|length=948bp|location=Sequence derived from alignment at CM002461.1:428719..429666- (Nannochloropsis gaditana)
ATGCAAATACTCTGTGTGCTTCTTGTCGGCATTTTAACCCTTTCTGGGCT
CATAAACGCGAATCTTGGACCTCCTTACCTGTACGTGACCATGCACGGCG
GAGAGGATAAGGGAGCGGTCAATCAGGTATATATCTACTCGCGCGCCGGC
CACGCTCTAGGCGAAGCCCTCGAGGAAAAAACCGACCTCAACGAACTGCG
GGGCATGGTGCTCTGGGGAGACTCAATGTTGTTGGCTAATGCCAATCGGA
AAAACTCATTCGTGGCACAGTTTCAAGGGGCGTGTCTTGAAACTGAAAAA
ATGAAGCAGATGCGAGTCATCGTCCCGAAGGACACTCCCGGCATTGACCA
CCCATACGGCGTCACGACGGACAACTCTCGTTTCCTTTATGTCTCGACGC
AGGGAACCAACGCTGTCTATCGATTCTACTTGACGACGGGAGAATCTGGG
CCAATAGCGCCGGCGTTGGCTGCACAGGGCGCCAAGCAAGACGATTTTCC
GGGGCTCTTTGCACAGTTCGACCCCGAGTCCGACGGCACGCGAGGCATAA
CATGGCACCCTGGGCGAAAGTTGTTGTTTGTTGCCAACAAGGATATTGGC
GTAGTCGCTTTAAATGAGGACGGATACGTGAAAGGAATTTTAGACGCAGA
TGAACCAATCGCGGTGTCATACTGCCCTGCACGAGACTCGATCTTTGTCT
CGAGCAAGGGGGACGACTCTGTTAGCGAATGGAATCCTCACTCTCTGAAG
CGAATGAAGAAATGGACCAGCCACCTTTTAGCGCACCCGGCAGGTCTAGC
CTGCTTCGAGGGGAGCGTCTTCGTGGTCTCGCAGGATGAAGGCACCATTC
TGGAGATTGACCTGGAGGGGGGCAAGGTCCGTGTGCTTGTGGAAGATTTG
CCTGACAAGGGTGAGCAAATCATTCTCTCTCATGCCCAGTCGTGCTAA
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Coding sequence (CDS) from alignment at CM002461.1:428719..429666-

>rna3443 ID=rna3443|Name=rna3443|organism=Nannochloropsis gaditana|type=CDS|length=948bp|location=Sequence derived from alignment at CM002461.1:428719..429666- (Nannochloropsis gaditana)
ATGCAAATACTCTGTGTGCTTCTTGTCGGCATTTTAACCCTTTCTGGGCT
CATAAACGCGAATCTTGGACCTCCTTACCTGTACGTGACCATGCACGGCG
GAGAGGATAAGGGAGCGGTCAATCAGGTATATATCTACTCGCGCGCCGGC
CACGCTCTAGGCGAAGCCCTCGAGGAAAAAACCGACCTCAACGAACTGCG
GGGCATGGTGCTCTGGGGAGACTCAATGTTGTTGGCTAATGCCAATCGGA
AAAACTCATTCGTGGCACAGTTTCAAGGGGCGTGTCTTGAAACTGAAAAA
ATGAAGCAGATGCGAGTCATCGTCCCGAAGGACACTCCCGGCATTGACCA
CCCATACGGCGTCACGACGGACAACTCTCGTTTCCTTTATGTCTCGACGC
AGGGAACCAACGCTGTCTATCGATTCTACTTGACGACGGGAGAATCTGGG
CCAATAGCGCCGGCGTTGGCTGCACAGGGCGCCAAGCAAGACGATTTTCC
GGGGCTCTTTGCACAGTTCGACCCCGAGTCCGACGGCACGCGAGGCATAA
CATGGCACCCTGGGCGAAAGTTGTTGTTTGTTGCCAACAAGGATATTGGC
GTAGTCGCTTTAAATGAGGACGGATACGTGAAAGGAATTTTAGACGCAGA
TGAACCAATCGCGGTGTCATACTGCCCTGCACGAGACTCGATCTTTGTCT
CGAGCAAGGGGGACGACTCTGTTAGCGAATGGAATCCTCACTCTCTGAAG
CGAATGAAGAAATGGACCAGCCACCTTTTAGCGCACCCGGCAGGTCTAGC
CTGCTTCGAGGGGAGCGTCTTCGTGGTCTCGCAGGATGAAGGCACCATTC
TGGAGATTGACCTGGAGGGGGGCAAGGTCCGTGTGCTTGTGGAAGATTTG
CCTGACAAGGGTGAGCAAATCATTCTCTCTCATGCCCAGTCGTGCTAA
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Synonyms
Publications