EWM27244.1, cds3434 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM27244.1 vs. NCBI_GenBank
Match: gi|585109425|gb|EWM27244.1| (Six-bladed beta-propeller TolB-like protein [Nannochloropsis gaditana]) HSP 1 Score: 653.67 bits (1685), Expect = 0.000e+0 Identity = 315/315 (100.00%), Postives = 315/315 (100.00%), Query Frame = 0
Query: 1 MQILCVLLVGILTLSGLINANLGPPYLYVTMHGGEDKGAVNQVYIYSRAGHALGEALEEKTDLNELRGMVLWGDSMLLANANRKNSFVAQFQGACLETEKMKQMRVIVPKDTPGIDHPYGVTTDNSRFLYVSTQGTNAVYRFYLTTGESGPIAPALAAQGAKQDDFPGLFAQFDPESDGTRGITWHPGRKLLFVANKDIGVVALNEDGYVKGILDADEPIAVSYCPARDSIFVSSKGDDSVSEWNPHSLKRMKKWTSHLLAHPAGLACFEGSVFVVSQDEGTILEIDLEGGKVRVLVEDLPDKGEQIILSHAQSC 315
MQILCVLLVGILTLSGLINANLGPPYLYVTMHGGEDKGAVNQVYIYSRAGHALGEALEEKTDLNELRGMVLWGDSMLLANANRKNSFVAQFQGACLETEKMKQMRVIVPKDTPGIDHPYGVTTDNSRFLYVSTQGTNAVYRFYLTTGESGPIAPALAAQGAKQDDFPGLFAQFDPESDGTRGITWHPGRKLLFVANKDIGVVALNEDGYVKGILDADEPIAVSYCPARDSIFVSSKGDDSVSEWNPHSLKRMKKWTSHLLAHPAGLACFEGSVFVVSQDEGTILEIDLEGGKVRVLVEDLPDKGEQIILSHAQSC
Sbjct: 1 MQILCVLLVGILTLSGLINANLGPPYLYVTMHGGEDKGAVNQVYIYSRAGHALGEALEEKTDLNELRGMVLWGDSMLLANANRKNSFVAQFQGACLETEKMKQMRVIVPKDTPGIDHPYGVTTDNSRFLYVSTQGTNAVYRFYLTTGESGPIAPALAAQGAKQDDFPGLFAQFDPESDGTRGITWHPGRKLLFVANKDIGVVALNEDGYVKGILDADEPIAVSYCPARDSIFVSSKGDDSVSEWNPHSLKRMKKWTSHLLAHPAGLACFEGSVFVVSQDEGTILEIDLEGGKVRVLVEDLPDKGEQIILSHAQSC 315
BLAST of EWM27244.1 vs. NCBI_GenBank
Match: gi|873220736|emb|CEM35070.1| (unnamed protein product [Vitrella brassicaformis CCMP3155]) HSP 1 Score: 164.851 bits (416), Expect = 8.975e-44 Identity = 108/293 (36.86%), Postives = 163/293 (55.63%), Query Frame = 0
Query: 24 PPYLYVTMHGGEDKGAVNQVYIYSRAGHALGEALEE-KTDLNELRGMVLWGDSMLLANANRKNSFVAQFQGACLETEKMKQ--MRVIVPKD--TPGIDHPYGVTTDNSRFLYVSTQGTNAVYRFYLTTGESGPIAPALAAQGAKQDDFPGLFAQFDPESDGTRGITWHPGRKLLFVANKDIGVVALNEDGYVKGILDADEPIAVSYCPARDSIFVSSKGDDSVSEWNPHSLKRMKKWTSHLLAHPAGLACFEGSVFVVSQDEGTILEIDLEGGKV-RVLVEDLPDKGEQIILS 310
PPYLYVT HGG G + V Y+R G LG L L ELRGM+L +L+A A R +S + ++ G C K ++ +RV+ + G+ HPYG + +LYVS Q ++ V R+ + TG GP+AP L +K D PG F +F + RG+ + +L+VANKD+GV+ N G + G L +PI+V YC RDS+++ S S+ E++ + ++ + L HPAG+ + S++V+ Q +LE + GK+ R LV+ LPD GE++ILS
Sbjct: 153 PPYLYVTFHGGS-TGDEHNVVRYARDGCNLGTVLMTGPHKLRELRGMMLSDGHLLVAEAYRYDSKIVEY-GPCQPESKGQREYVRVLTRRSAHNEGLWHPYGFAQWDG-YLYVSNQNSHEVVRYDVETGLPGPVAPVLKEYESKLD--PGTFVKFKAKKGRIRGVAFD-KYGVLYVANKDLGVLLYNHQGALLGRLPVKKPISVFYCFDRDSVWIGSVKRHSLYEFSAQTHLLIQVISDPSLRHPAGMVSYGDSLYVIGQATNRLLEYSISSGKLRRTLVDKLPDDGERVILS 439
BLAST of EWM27244.1 vs. NCBI_GenBank
Match: gi|1049458395|emb|SBT80900.1| (conserved Plasmodium protein, unknown function [Plasmodium malariae]) HSP 1 Score: 140.584 bits (353), Expect = 2.499e-34 Identity = 97/311 (31.19%), Postives = 166/311 (53.38%), Query Frame = 0
Query: 11 ILTLSGLINANLGPPYLYVTMHGGEDKGAVNQVYIYSRAGHALGEAL---EEKTDLNE---LRGMVLWGDSMLLANANRKNSFVAQFQGACLE-TEKMKQMRVIVPKDT---PGIDHPYGVTTDNSRFLYVSTQGTNAVYRFYLTTGESGPIAPALAAQGAKQDDFPGLFAQFDPESDGTRGITWHPGRKLLFVANKDIGVVALNEDGYVKGILDADEPIAVSYCPARDSIFVSSKGDDSVSEWNPHSLKRMKKWTSHLLAHPAGLACFEGSVFVVSQDEGTILEIDLEGGKV-RVLVEDLPDKGEQIILS 310
I L LIN PYLYVT HGG+ K +V+ + +SR G+ LG L EE LRG+++ G+++ + ++ + NS + QF + E + + + + + +D+ P + HPYG+ +N F Y+S+Q T V RF++ +SG + ++ + D GL + + +D RGI + K +V+NK +GV ++D + I+ PI++ + + I V S + E++ ++ + +K LL H AG+ ++ S+FVVSQ + +LE L + RVLV+D D GE++ILS
Sbjct: 208 ISKLKTLINE---QPYLYVTYHGGKKKNSVHNICKFSRDGYYLGSILLPFEEGGKFFNCISLRGLLIHGNNLYVTDSYKDNSKIFQFSSSISELSNRREYISTFISQDSKTNPFMIHPYGIKKNNDYF-YISSQNTGTVLRFHI---DSGKLGQSINSYKGLSD---GLVVKLN-NNDEIRGIDFDNLGKC-YVSNKQVGVQIYDKDFNLIKIIPVFSPISILFDSTNNHILVGSSKTHDIKEYDVNNFELIKVIKHPLLKHVAGITIYQDSLFVVSQKKNKLLEFSLTTALLKRVLVDDFSDIGERVILS 506
BLAST of EWM27244.1 vs. NCBI_GenBank
Match: gi|1037137326|emb|SBS90849.1| (hypothetical protein PMALA_031090 [Plasmodium malariae] >gi|1070256125|emb|SCP03505.1| conserved Plasmodium protein, unknown function [Plasmodium malariae]) HSP 1 Score: 138.272 bits (347), Expect = 1.803e-33 Identity = 97/311 (31.19%), Postives = 164/311 (52.73%), Query Frame = 0
Query: 11 ILTLSGLINANLGPPYLYVTMHGGEDKGAVNQVYIYSRAGHALGEAL---EEKTDLNE---LRGMVLWGDSMLLANANRKNSFVAQFQGACLE-TEKMKQMRVIVPKD---TPGIDHPYGVTTDNSRFLYVSTQGTNAVYRFYLTTGESGPIAPALAAQGAKQDDFPGLFAQFDPESDGTRGITWHPGRKLLFVANKDIGVVALNEDGYVKGILDADEPIAVSYCPARDSIFVSSKGDDSVSEWNPHSLKRMKKWTSHLLAHPAGLACFEGSVFVVSQDEGTILEIDLEGGKV-RVLVEDLPDKGEQIILS 310
I L LIN PYLYVT HGG+ K +V+ + +SR G+ LG L EE LRG+++ G+++ + ++ + NS + QF + E + + + + + +D P + HPYG+ +N F Y+S+Q T V RF++ +SG + ++ + D GL + + +D RGI + K +V+NK GV ++D + I+ PI++ + + I V S + E++ ++ + +K LL H AG+ ++ S+FVVSQ + +LE L + RVLV+D D GE++ILS
Sbjct: 208 ISKLKTLINE---QPYLYVTYHGGKKKNSVHNICKFSRDGYYLGSILLPFEEGGKFFNCISLRGLLIHGNNLYVTDSYKDNSKIFQFSSSISELSNRREYISTFISQDAKTNPFMIHPYGIKKNNDYF-YISSQNTGTVLRFHI---DSGKLGQSINSYKGLSD---GLVVKLN-NNDEIRGIDFDNLGKC-YVSNKQAGVQIYDKDFNLIKIIPVFSPISILFDSTNNHILVGSSKTHDIKEYDVNNFELIKVIKHPLLKHVAGITIYQDSLFVVSQKKNKLLEFSLTTALLKRVLVDDFSDIGERVILS 506
BLAST of EWM27244.1 vs. NCBI_GenBank
Match: gi|1103663020|emb|CRG97784.1| (conserved Plasmodium protein, unknown function [Plasmodium gallinaceum]) HSP 1 Score: 134.42 bits (337), Expect = 4.178e-32 Identity = 88/297 (29.63%), Postives = 158/297 (53.20%), Query Frame = 0
Query: 25 PYLYVTMHGGEDKGAVNQVYIYSRAGHALGEAL----EEKTDLN--ELRGMVLWGDSMLLANANRKNSFVAQFQGACLE-TEKMKQMRVIVP---KDTPGIDHPYGVTTDNSRFLYVSTQGTNAVYRFYLTTGESGPIAPALAAQGAKQDDFPGLFAQFDPESDGTRGITWHPGRKLLFVANKDIGVVALNEDGYVKGILDADEPIAVSYCPARDSIFVSSKGDDSVSEWNPHSLKRMKKWTSHLLAHPAGLACFEGSVFVVSQDEGTILEIDLEGGKVR-VLVEDLPDKGEQIILS 310
P+LY+T HGG+ K +++ + +SR G+ LG L EE N LRG++L+ D++ + ++ + NS + QF + E + + + + + K+ P + HPYG+ + F YVS+Q T V RF + G+ + +K+++ G+ + ++D RGI + K +VANK GV +E+ + I+ PI++ Y I V S + E++ H+ + +K LL H AG++ + S+FVVSQ + +LE L ++ ++V+DL D GE++++S
Sbjct: 221 PFLYLTYHGGKKKNSIHNICKFSRDGYFLGSVLLPFEEEGKIFNCISLRGLLLYKDNLYVTDSFKNNSKIFQFSDSLTEFSNRREYLSTFISQNEKENPLMVHPYGIKRKDEYF-YVSSQNTGTVLRFNVNNGKLD------KSLNSKKNNSDGVVVKLH-KNDEIRGIDFDNYGKC-YVANKQTGVQVYDENFNLLKIIPVLSPISIVYDSRNSHILVGSSKSHDIKEYDIHNYELIKVVKHPLLRHVAGISIYGDSIFVVSQKKNKLLEFSLSTSLLKNIIVDDLSDTGERVMVS 508
BLAST of EWM27244.1 vs. NCBI_GenBank
Match: gi|1061789916|emb|SCM26483.1| (conserved Plasmodium protein, unknown function [Plasmodium chabaudi chabaudi]) HSP 1 Score: 134.035 bits (336), Expect = 7.257e-32 Identity = 87/300 (29.00%), Postives = 159/300 (53.00%), Query Frame = 0
Query: 25 PYLYVTMHGGEDKGAVNQVYIYSRAGHALGEAL---EEK---TDLNELRGMVLWGDSMLLANANRKNSFVAQFQGACLETEKMKQ-MRVIVPKDT---PGIDHPYGVTTDNSRFLYVSTQGTNAVYRFYLTTGESGPIAPALAAQGAKQDDFPGLFAQFDPESDGTRGITW-HPGRKLLFVANKDIGVVALNEDGYVKGILDADEPIAVSYCPARDSIFVSSKGDDSVSEWNPHSLKRMKKWTSHLLAHPAGLACFEGSVFVVSQDEGTILEIDLEGGKVR-VLVEDLPDKGEQIILSHA 312
P+LY+T HGG+ K ++ + +SR G+ LG L E ++ LRG++L + + +A++ + NS + +F A + ++ + V + +D P + HPYG+ F Y+S+Q T V RF + +GE GP +L + G+ + + + + RG+ + H GR +V+NK +GV +++ + I+ PI+V + A + I V S + E++ H+ + +K LL H AG+ ++ S+FV+SQ + +LE L ++ +++ D D GE++ILS A
Sbjct: 219 PFLYLTYHGGKKKNGIHNICKFSRDGYFLGSVLLPFEHNGILFNIVSLRGLLLHDNYLYVADSFKNNSKIYKFSDAVNDLSNRREFVSVFISQDNQTNPLMIHPYGIKKHEDYF-YISSQNTGTVLRFDIESGELGPSKDSLT------NTHNGVVVKLN-KFEEIRGLDFDHLGR--CYVSNKQVGVQVYDKNFNLIKIIPMFSPISVLFNNANNRILVGSSKSHDIKEYDTHNFELIKTINHPLLKHVAGMVIYKDSLFVISQRKNKLLEFSLTTNLLKNIIINDFSDIGERVILSWA 508
BLAST of EWM27244.1 vs. NCBI_GenBank
Match: gi|1068927626|emb|SCN63186.1| (conserved Plasmodium protein, unknown function [Plasmodium chabaudi adami]) HSP 1 Score: 133.65 bits (335), Expect = 1.001e-31 Identity = 87/300 (29.00%), Postives = 158/300 (52.67%), Query Frame = 0
Query: 25 PYLYVTMHGGEDKGAVNQVYIYSRAGHALGEAL---EEK---TDLNELRGMVLWGDSMLLANANRKNSFVAQFQGACLETEKMKQ-MRVIVPKDT---PGIDHPYGVTTDNSRFLYVSTQGTNAVYRFYLTTGESGPIAPALAAQGAKQDDFPGLFAQFDPESDGTRGITW-HPGRKLLFVANKDIGVVALNEDGYVKGILDADEPIAVSYCPARDSIFVSSKGDDSVSEWNPHSLKRMKKWTSHLLAHPAGLACFEGSVFVVSQDEGTILEIDLEGGKVR-VLVEDLPDKGEQIILSHA 312
P+LY+T HGG+ K ++ + +SR G+ LG L E ++ LRG++L + + +A++ + NS + +F A ++ + V + +D P + HPYG+ F Y+S+Q T V RF + +GE GP +L + G+ + + + + RG+ + H GR +V+NK +GV +++ + I+ PI+V + A + I V S + E++ H+ + +K LL H AG+ ++ S+FV+SQ + +LE L ++ +++ D D GE++ILS A
Sbjct: 219 PFLYLTYHGGKKKNGIHNICKFSRDGYFLGSVLLPFEHNGILFNIVSLRGLLLHDNYLYVADSFKNNSKIYKFSDAVNNLSNRREFVSVFISQDNQTNPLMIHPYGIKKHEDYF-YISSQNTGTVLRFDIESGELGPSKDSLT------NTHNGVVVKLN-KFEEIRGLDFDHLGR--CYVSNKQVGVQVYDKNFNLIKIIPMFSPISVLFNNANNRILVGSSKSHDIKEYDTHNFELIKTINHPLLKHVAGMVIYKDSLFVISQRKNKLLEFSLTTNLLKNIIINDFSDIGERVILSWA 508
BLAST of EWM27244.1 vs. NCBI_GenBank
Match: gi|1061794875|emb|SCM25229.1| (conserved Plasmodium protein, unknown function [Plasmodium chabaudi adami]) HSP 1 Score: 133.65 bits (335), Expect = 1.012e-31 Identity = 87/300 (29.00%), Postives = 158/300 (52.67%), Query Frame = 0
Query: 25 PYLYVTMHGGEDKGAVNQVYIYSRAGHALGEAL---EEK---TDLNELRGMVLWGDSMLLANANRKNSFVAQFQGACLETEKMKQ-MRVIVPKDT---PGIDHPYGVTTDNSRFLYVSTQGTNAVYRFYLTTGESGPIAPALAAQGAKQDDFPGLFAQFDPESDGTRGITW-HPGRKLLFVANKDIGVVALNEDGYVKGILDADEPIAVSYCPARDSIFVSSKGDDSVSEWNPHSLKRMKKWTSHLLAHPAGLACFEGSVFVVSQDEGTILEIDLEGGKVR-VLVEDLPDKGEQIILSHA 312
P+LY+T HGG+ K ++ + +SR G+ LG L E ++ LRG++L + + +A++ + NS + +F A ++ + V + +D P + HPYG+ F Y+S+Q T V RF + +GE GP +L + G+ + + + + RG+ + H GR +V+NK +GV +++ + I+ PI+V + A + I V S + E++ H+ + +K LL H AG+ ++ S+FV+SQ + +LE L ++ +++ D D GE++ILS A
Sbjct: 219 PFLYLTYHGGKKKNGIHNICKFSRDGYFLGSVLLPFEHNGILFNIVSLRGLLLHDNYLYVADSFKNNSKIYKFSDAVNNLSNRREFVSVFISQDNQTNPLMIHPYGIKKHEDYF-YISSQNTGTVLRFDIESGELGPSKDSLT------NTHNGVVVKLN-KFEEIRGLDFDHLGR--CYVSNKQVGVQVYDKNFNLIKIIPMFSPISVLFNNANNRILVGSSKSHDIKEYDTHNFELIKTINHPLLKHVAGMVIYKDSLFVISQRKNKLLEFSLTTNLLKNIIINDFSDIGERVILSWA 508
BLAST of EWM27244.1 vs. NCBI_GenBank
Match: gi|1068922930|emb|SCN63229.1| (conserved Plasmodium protein, unknown function [Plasmodium chabaudi chabaudi]) HSP 1 Score: 133.265 bits (334), Expect = 1.108e-31 Identity = 87/300 (29.00%), Postives = 159/300 (53.00%), Query Frame = 0
Query: 25 PYLYVTMHGGEDKGAVNQVYIYSRAGHALGEAL---EEK---TDLNELRGMVLWGDSMLLANANRKNSFVAQFQGACLETEKMKQ-MRVIVPKDT---PGIDHPYGVTTDNSRFLYVSTQGTNAVYRFYLTTGESGPIAPALAAQGAKQDDFPGLFAQFDPESDGTRGITW-HPGRKLLFVANKDIGVVALNEDGYVKGILDADEPIAVSYCPARDSIFVSSKGDDSVSEWNPHSLKRMKKWTSHLLAHPAGLACFEGSVFVVSQDEGTILEIDLEGGKVR-VLVEDLPDKGEQIILSHA 312
P+LY+T HGG+ K ++ + +SR G+ LG L E ++ LRG++L + + +A++ + NS + +F A + ++ + V + +D P + HPYG+ F Y+S+Q T V RF + +GE GP +L + G+ + + + + RG+ + H GR +V+NK +GV +++ + I+ PI+V + A + I V S + E++ H+ + +K LL H AG+ ++ S+FV+SQ + +LE L ++ +++ D D GE++ILS A
Sbjct: 219 PFLYLTYHGGKKKNGIHNICKFSRDGYFLGSVLLPFEHNGILFNIVSLRGLLLHDNYLYVADSFKNNSKIYKFSDAVNDLSNRREFVSVFISQDNQTNPLMIHPYGIKKHEDYF-YISSQNTGTVLRFDVESGELGPSKDSLT------NTHNGVVVKLN-KFEEIRGLDFDHLGR--CYVSNKQVGVQVYDKNFNLIKIIPMFSPISVLFNNANNRILVGSSKSHDIKEYDTHNFELIKTINHPLLKHVAGMVIYKDSLFVISQRKNKLLEFSLTTNLLKNIIINDFSDIGERVILSWA 508
BLAST of EWM27244.1 vs. NCBI_GenBank
Match: gi|1102626493|emb|CRH02644.1| (conserved Plasmodium protein, unknown function [Plasmodium relictum]) HSP 1 Score: 133.265 bits (334), Expect = 1.118e-31 Identity = 90/299 (30.10%), Postives = 160/299 (53.51%), Query Frame = 0
Query: 25 PYLYVTMHGGEDKGAVNQVYIYSRAGHALGEAL----EEKTDLN--ELRGMVLWGDSMLLANANRKNSFVAQFQGACLE-TEKMKQMRVIVP---KDTPGIDHPYGVTTDNSRFLYVSTQGTNAVYRFYLTTGESGPIAPALAAQGAKQDDFPGLFAQFDPESDGTRGITWHPGRKLLFVANKDIGVVALNEDGYVKGILDADEPIAVSYCPARDSIFVSSKGDDSVSEWNPHSLKRMKKWTSHLLAHPAGLACFEGSVFVVSQDEGTILEIDLEGGKVR-VLVEDLPDKGEQIILSHA 312
P+LY+T HGG+ K +++ + +SR G+ LG L +E N +RG++L+ + + + ++ + NS + QF + +E + + + + + K+ P + HPYG+ + F YVS+Q T V RF+++ G+ G L ++ + D GL + +++ RGI + K +VANK GV +ED + ++ PI+V Y I V S + E++ H+ + +K LL H AG++ + S+FVVSQ + +LE L ++ ++V+DL D GE++I S A
Sbjct: 218 PFLYLTHHGGKKKNSIHNICKFSRDGYFLGSVLLPFEDEGKIFNCISIRGLLLYENYLYVTDSFKNNSKIFQFSDSLIEFSNRREYISTFIKHDEKENPLMIHPYGIKRKDEYF-YVSSQNTGTVLRFHISNGKLGE---PLKSKKSNSD---GLVIKLH-KNEEIRGIDFDNYGKC-YVANKQSGVQVYDEDFNLIKVIPILSPISVLYDSRNSHIMVGSSKSHDIKEYDIHNYELIKTIKHPLLRHVAGISIYGDSIFVVSQKKNKLLEFSLSTSLLKNIIVDDLSDIGERVITSPA 507 The following BLAST results are available for this feature:
BLAST of EWM27244.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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