rna3440, rna3440 (mRNA) Nannochloropsis gaditana

Overview
Namerna3440
Unique Namerna3440
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length934
Alignment locationCM002461.1:423685..424729 -

Link to JBrowse

Properties
Property NameValue
Productmitochondrial protein
Orig transcript idgnl|cribi|Naga_100038g38.7695.mrna
Orig protein idgnl|cribi|Naga_100038g38.7695
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002461.1supercontigCM002461.1:423685..424729 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100038g38gene3314Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna3440rna3440-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM27240.1cds3431Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna3440 ID=rna3440|Name=rna3440|organism=Nannochloropsis gaditana|type=mRNA|length=934bp
CCCAGCGCTGTTCTGTTTCCCTTGGCCTGCATGCAGGGGCAGTCAGAACA
CTCTTTGTATTATAAGATTACGTGAGGACATGTGCACGCATTGTCAGGAT
CAATGGAGGGCTGAGCTTCAACCTTCCACTTACCTCTCTCTCCTAAGCCA
GGTTCTTGCATGCGTTGGCCGGCATTCAAAGACCGCGATGCAGGAGGGCG
CTTCATACTAGAAGCAGCTACCTTCGCAAGCTCCGCCCTCTTTGCTGGCG
CCGCTCTGTACATCTCTCTGGTGGAGCACCCTGCTCGTAAAACCCTTGCT
GCATCCAGTTTGGATGTTCCGAAATCTAAAGGGAAGGCAATCAAAAAAAG
TGCCATCAAGAGCGCAGTTTTGCAATGGCGCGAATCATATCAACGGGCCG
CTCCACTTCAAGTCTTTTATGCGCTTGTGGCCGGTGTCGGTGGTATGTGC
AACACTTTTGTGCTCAAGGAGGCTGCGGCCTGGGCATGGGGTGGGGGGCT
CGTGGCCATGAACGTGCCTTTCACTCTCCTCTGCCTCATGCCGATCAACA
AAGAGCTTGGAAAGCGTGCGGAGATGGCAGAGTTGGAACAAGAGACCCGC
GGGACGTCGGATCGCGAAGAAGAGACAAAAGTGGAGGAGGAAGAGGTAGA
GGAGGCCGACCCTGTTTCTAGACGCGTCACCTTCTGCCTGGGCTCTTGGT
CCTGCTCAGGTCTGCCATCCACCAAGCACCTTCTCCGGCTGTGGGGCCAA
CTGCATGCTGTTCGTGCTGTCCTGGGCCTCAGCGGCTTTTTGGTCCTCAC
TGCTCATATTCTCTCCGTCGCGCACTCCCGCCGAGCTAGCAAGGTGATGA
TTTATGGGTGAAGGGGGGGGCCATGTTCACAGACCGATTGGCGCAGAGGA
GCATCTTAAAGAAAATGAAAACAACATATTTCTA
back to top

protein sequence of rna3440

>rna3440-protein ID=rna3440-protein|Name=rna3440|organism=Nannochloropsis gaditana|type=polypeptide|length=195bp
MAPPCAGLLFSSAARRSIYGLRNAVVTAFFDTRTLSSSAHSKPPPSPELT
PAQVRRIGERTKAQLDDHLRLKTQVPESSLDPTAPPGPVDTDLIRRKRLL
YRSKQRGWLEVDLLLGSWAAENVMSLSGPELDEYEKILNMETIDIFNLVN
GALAPPPALKGSKILSRLQEYANSSPFGNASTRTYEAVKDRTGLI
back to top

mRNA from alignment at CM002461.1:423685..424729-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna3440 ID=rna3440|Name=rna3440|organism=Nannochloropsis gaditana|type=mRNA|length=1045bp|location=Sequence derived from alignment at CM002461.1:423685..424729- (Nannochloropsis gaditana)
TGCGCCTCTCGCACGCATTTCCGCGTCCACAGGTCTACATCACAAACTAT
CGGTCGTCTAGCGATCGTGTATTTCGCAGGTTCCGCAACATGGCGCCACC
TTGCGCGGGCCTCCTTTTCTCGTCAGCGGCACGTCGAAGCATATATGGCC
TCCGGAATGCTGTTGTCACGGCTTTTTTCGATACCCGCACCCTGTCATCG
TCCGCACACAGCAAGCCTCCACCCTCTCCAGAGCTTACTCCGGCGCAGGT
ATTTTTGGAGGGGATTGTTCGCGGACACCAGTAGCTTTGATCCCAAGACT
GGATGAAGAAGCCAGACCTCAAAAATAGTGTGGTGTATGTTGACACAATA
TCGGATAAATGATGTCTACACCTCATATTTCATCTTTTCGGGGATGCTGC
GGTCAAAGACCTCACAAACGAGCATGCACACAACAACCTGCAAACAGTCG
CCTGATGGATCTAATTCAATTCGTCTGAGCAGCGACAGCTCACGCTCTCC
ATATCACACACCCTACAGGTCCGTCGCATAGGAGAACGCACCAAAGCCCA
ACTTGACGATCATCTGCGCCTTAAAACACAGGTCCCCGAGTCCAGCCTCG
ACCCGACTGCCCCTCCCGGTCCCGTCGACACGGATCTCATCCGCCGAAAG
CGCCTTCTGTACCGGAGCAAGCAACGGGGATGGCTGGAAGTGGACCTGCT
CCTCGGAAGTTGGGCGGCTGAGAACGTGATGAGTCTGAGCGGGCCGGAAC
TCGATGAATACGAGAAAATCTTGAACATGGAAACCATCGACATATTCAAC
TTGGTCAATGGGGCGCTGGCCCCCCCCCCCGCCTTGAAGGGGTCAAAAAT
TCTGTCTCGGTTGCAGGAGTATGCGAATTCTTCCCCATTCGGGAACGCAT
CAACGCGAACATACGAGGCTGTGAAGGACCGAACAGGCTTGATCTAAGAC
CTTCCATCCTGCACCAGAACGCTCATTTCGCAAGGCCCCTCGCTTGGGGT
AACGAGAGCATGCGAAAAGAAAATAGCGAGTAATACTGAGCTAGA
back to top

Coding sequence (CDS) from alignment at CM002461.1:423685..424729-

>rna3440 ID=rna3440|Name=rna3440|organism=Nannochloropsis gaditana|type=CDS|length=1176bp|location=Sequence derived from alignment at CM002461.1:423685..424729- (Nannochloropsis gaditana)
GTCCGTCGCATAGGAGAACGCACCAAAGCCCAACTTGACGATCATCTGCG
CCTTAAAACACAGGTCCCCGAGTCCAGCCTCGACCCGACTGCCCCTCCCG
GTCCCGTCGACACGGATCTCATCCGCCGAAAGCGCCTTCTGTACCGGAGC
AAGCAACGGGGATGGCTGGAAGTGGACCTGCTCCTCGGAAGTTGGGCGGC
TGAGAACGTGATGAGTCTGAGCGGGCCGGAACTCGATGAATACGAGAAAA
TCTTGAACATGGAAACCATCGACATATTCAACTTGGTCAATGGGGCGCTG
GCCCCCCCCCCCGCCTTGAAGGGGTCAAAAATTCTGTCTCGGTTGCAGGA
GTATGCGAATTCTTCCCCATTCGGGAACGCATCAACGCGAACATACGAGG
CTGTGAAGGACCGAACAGGCTTGATCTAAATGGCGCCACCTTGCGCGGGC
CTCCTTTTCTCGTCAGCGGCACGTCGAAGCATATATGGCCTCCGGAATGC
TGTTGTCACGGCTTTTTTCGATACCCGCACCCTGTCATCGTCCGCACACA
GCAAGCCTCCACCCTCTCCAGAGCTTACTCCGGCGCAGGTCCGTCGCATA
GGAGAACGCACCAAAGCCCAACTTGACGATCATCTGCGCCTTAAAACACA
GGTCCCCGAGTCCAGCCTCGACCCGACTGCCCCTCCCGGTCCCGTCGACA
CGGATCTCATCCGCCGAAAGCGCCTTCTGTACCGGAGCAAGCAACGGGGA
TGGCTGGAAGTGGACCTGCTCCTCGGAAGTTGGGCGGCTGAGAACGTGAT
GAGTCTGAGCGGGCCGGAACTCGATGAATACGAGAAAATCTTGAACATGG
AAACCATCGACATATTCAACTTGGTCAATGGGGCGCTGGCCCCCCCCCCC
GCCTTGAAGGGGTCAAAAATTCTGTCTCGGTTGCAGGAGTATGCGAATTC
TTCCCCATTCGGGAACGCATCAACGCGAACATACGAGGCTGTGAAGGACC
GAACAGGCTTGATCTAAATGGCGCCACCTTGCGCGGGCCTCCTTTTCTCG
TCAGCGGCACGTCGAAGCATATATGGCCTCCGGAATGCTGTTGTCACGGC
TTTTTTCGATACCCGCACCCTGTCATCGTCCGCACACAGCAAGCCTCCAC
CCTCTCCAGAGCTTACTCCGGCGCAG
back to top
Synonyms
Publications