EWM27240.1, cds3431 (CDS) Nannochloropsis gaditana

Overview
NameEWM27240.1
Unique Namecds3431
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002461.1:424482..424640 -
Alignment locationCM002461.1:423783..424211 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM27240.1
Productmitochondrial protein
Orig transcript idgnl|cribi|Naga_100038g38.7695.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002461.1supercontigCM002461.1:424482..424640 -
CM002461.1supercontigCM002461.1:423783..424211 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: INTERPRO
TermDefinition
IPR005631SDH
Homology
BLAST of EWM27240.1 vs. NCBI_GenBank
Match: gi|585109421|gb|EWM27240.1| (mitochondrial protein [Nannochloropsis gaditana])

HSP 1 Score: 396.741 bits (1018), Expect = 9.393e-140
Identity = 195/195 (100.00%), Postives = 195/195 (100.00%), Query Frame = 0
Query:    1 MAPPCAGLLFSSAARRSIYGLRNAVVTAFFDTRTLSSSAHSKPPPSPELTPAQVRRIGERTKAQLDDHLRLKTQVPESSLDPTAPPGPVDTDLIRRKRLLYRSKQRGWLEVDLLLGSWAAENVMSLSGPELDEYEKILNMETIDIFNLVNGALAPPPALKGSKILSRLQEYANSSPFGNASTRTYEAVKDRTGLI 195
            MAPPCAGLLFSSAARRSIYGLRNAVVTAFFDTRTLSSSAHSKPPPSPELTPAQVRRIGERTKAQLDDHLRLKTQVPESSLDPTAPPGPVDTDLIRRKRLLYRSKQRGWLEVDLLLGSWAAENVMSLSGPELDEYEKILNMETIDIFNLVNGALAPPPALKGSKILSRLQEYANSSPFGNASTRTYEAVKDRTGLI
Sbjct:    1 MAPPCAGLLFSSAARRSIYGLRNAVVTAFFDTRTLSSSAHSKPPPSPELTPAQVRRIGERTKAQLDDHLRLKTQVPESSLDPTAPPGPVDTDLIRRKRLLYRSKQRGWLEVDLLLGSWAAENVMSLSGPELDEYEKILNMETIDIFNLVNGALAPPPALKGSKILSRLQEYANSSPFGNASTRTYEAVKDRTGLI 195          
BLAST of EWM27240.1 vs. NCBI_GenBank
Match: gi|298712750|emb|CBJ33347.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 145.976 bits (367), Expect = 1.384e-40
Identity = 77/152 (50.66%), Postives = 99/152 (65.13%), Query Frame = 0
Query:   48 ELTPAQVRRIGERTKAQLDDHLRLKTQVPESSLDPTAPPG-----PVDTDLIRRKRLLYRSKQRGWLEVDLLLGSWAAENVMSLSGPELDEYEKILNMETIDIFNLVNGALAPPPALKGSKILSRLQEYANSSPFGNASTRTYEAVKDRTGL 194
            ELTP +V R+G RT+    DH+ L T+ P++SL    PPG      V  D +RRKRL+YRSKQRGWLEVDLLLG+WA  NV  LS  ++D YE ILN+ET+DIFN + G  A PPA   + +L+RLQ Y  S+P G  S  +Y + K  + L
Sbjct:   63 ELTPEEVLRVGARTQEMWKDHVALTTEFPDASL----PPGGHEASSVSPDAVRRKRLVYRSKQRGWLEVDLLLGTWAERNVAGLSAADMDSYEDILNLETVDIFNFITGN-ADPPAFVDAPMLARLQAYVKSNPLGQ-SPASYASAKRESNL 208          
BLAST of EWM27240.1 vs. NCBI_GenBank
Match: gi|1173950128|gb|OQR98107.1| (hypothetical protein ACHHYP_20400 [Achlya hypogyna])

HSP 1 Score: 138.272 bits (347), Expect = 4.312e-38
Identity = 74/157 (47.13%), Postives = 98/157 (62.42%), Query Frame = 0
Query:   32 TRTLS---SSAHSKPPPSPELTPAQVRRIGERTKAQLDDHLRLKTQVPESSLDPTAPPGPVDTDLIRRKRLLYRSKQRGWLEVDLLLGSWAAENVMSLSGPELDEYEKILNMETIDIFNLVNGALAPPPALKGSKILSRLQEYANSSPFGNASTRTY 185
            TR LS   SS H+  PP   +T AQ  R  ER      +H  +K + P++S    +    +D D+  RKR++YRSKQRGWLEVDLLLG WA+ENVMSL+  EL +YE ILN ETIDIFN ++G    PP +  + ++ RLQ Y  +SP G AS + +
Sbjct:   15 TRALSTEHSSFHANLPPLS-ITEAQEMRAQERNAQMRKEHFAMKAEFPDASQGDVS----IDADMANRKRVIYRSKQRGWLEVDLLLGRWASENVMSLTKEELSQYEDILNRETIDIFNFISGKDTVPPEI-DTPMMKRLQAYCKTSPLGKASIQGF 165          
BLAST of EWM27240.1 vs. NCBI_GenBank
Match: gi|813171530|ref|XP_012204520.1| (hypothetical protein SPRG_20818 [Saprolegnia parasitica CBS 223.65] >gi|641530669|gb|KDO24781.1| hypothetical protein SPRG_20818 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 136.732 bits (343), Expect = 2.245e-37
Identity = 73/152 (48.03%), Postives = 95/152 (62.50%), Query Frame = 0
Query:   34 TLSSSAHSKPPPSPELTPAQVRRIGERTKAQLDDHLRLKTQVPESSLDPTAPPGPVDTDLIRRKRLLYRSKQRGWLEVDLLLGSWAAENVMSLSGPELDEYEKILNMETIDIFNLVNGALAPPPALKGSKILSRLQEYANSSPFGNASTRTY 185
            T  SS H+  PP   +T AQ  R   R +    DH  +K + P++S    A    +D D   RKR++YRSKQRGWLEVDLLLG WA+ENVMSL+  EL +YE ILN ETIDIFN ++G  A PP +  + ++ RLQ Y  +SP G AS + +
Sbjct:   23 TEHSSFHANLPPLS-ITEAQELRAQVRNEQMRKDHFAIKAEYPDASQGEEA----IDADKANRKRVIYRSKQRGWLEVDLLLGRWASENVMSLTADELRQYEDILNRETIDIFNFISGKDAVPPEI-DTPMMKRLQAYCKTSPLGKASIQGF 168          
BLAST of EWM27240.1 vs. NCBI_GenBank
Match: gi|813225712|ref|XP_012211933.1| (hypothetical protein SPRG_17211 [Saprolegnia parasitica CBS 223.65] >gi|641521955|gb|KDO17362.1| hypothetical protein SPRG_17211 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 135.191 bits (339), Expect = 8.995e-37
Identity = 72/152 (47.37%), Postives = 94/152 (61.84%), Query Frame = 0
Query:   34 TLSSSAHSKPPPSPELTPAQVRRIGERTKAQLDDHLRLKTQVPESSLDPTAPPGPVDTDLIRRKRLLYRSKQRGWLEVDLLLGSWAAENVMSLSGPELDEYEKILNMETIDIFNLVNGALAPPPALKGSKILSRLQEYANSSPFGNASTRTY 185
            T  SS H+  PP   +T AQ  R   R +    DH  +K + P++S    A    +D D   RKR++YRSKQRGWLEVDLLLG WA+ENVMSL+  EL +YE ILN ETIDIFN ++G    PP +  + ++ RLQ Y  +SP G AS + +
Sbjct:   23 TEHSSFHANLPPLS-ITEAQELRAQVRNEQMRKDHFAMKAEYPDASQGEEA----IDADKANRKRVIYRSKQRGWLEVDLLLGRWASENVMSLTADELRQYEDILNRETIDIFNFISGKDVVPPEI-DTPMMKRLQAYCKTSPLGKASIQGF 168          
BLAST of EWM27240.1 vs. NCBI_GenBank
Match: gi|669151332|ref|XP_008611228.1| (hypothetical protein SDRG_07186 [Saprolegnia diclina VS20] >gi|530737236|gb|EQC35478.1| hypothetical protein SDRG_07186 [Saprolegnia diclina VS20])

HSP 1 Score: 132.88 bits (333), Expect = 7.131e-36
Identity = 71/152 (46.71%), Postives = 94/152 (61.84%), Query Frame = 0
Query:   34 TLSSSAHSKPPPSPELTPAQVRRIGERTKAQLDDHLRLKTQVPESSLDPTAPPGPVDTDLIRRKRLLYRSKQRGWLEVDLLLGSWAAENVMSLSGPELDEYEKILNMETIDIFNLVNGALAPPPALKGSKILSRLQEYANSSPFGNASTRTY 185
            T  SS H+  PP   +T AQ  R   R +    +H   K + P++S    A    +D D+  RKR++YRSKQRGWLEVDLLLG WA+ENVMSL+  EL +YE ILN ETIDIFN ++G    PP +  + ++ RLQ Y  +SP G AS + +
Sbjct:   23 TEHSSFHANLPPLS-ITEAQELRAQVRNEQMRKEHFASKAEYPDASQGEKA----IDADMANRKRVIYRSKQRGWLEVDLLLGRWASENVMSLTADELRQYEDILNRETIDIFNFISGKDTVPPEI-DTPMMKRLQAYCKTSPLGKASLQGF 168          
BLAST of EWM27240.1 vs. NCBI_GenBank
Match: gi|301108613|ref|XP_002903388.1| (conserved hypothetical protein [Phytophthora infestans T30-4] >gi|262097760|gb|EEY55812.1| conserved hypothetical protein [Phytophthora infestans T30-4])

HSP 1 Score: 130.568 bits (327), Expect = 5.510e-35
Identity = 69/137 (50.36%), Postives = 87/137 (63.50%), Query Frame = 0
Query:   49 LTPAQVRRIGERTKAQLDDHLRLKTQVPESSLDPTAPPGPVDTDLIRRKRLLYRSKQRGWLEVDLLLGSWAAENVMSLSGPELDEYEKILNMETIDIFNLVNGALAPPPALKGSKILSRLQEYANSSPFGNASTRTY 185
            ++  Q +R  ER+ A   DH+  K   P SS         VD+D   RKR++YRSKQRGWLEVDLLLG WA++NVM LS  EL +YE ILN ETIDIFN ++G  A P  L  + ++ RLQEY  +SP G AST  +
Sbjct:   32 ISQDQAKRALERSAAIRADHISAKGNFPASS----QGDHDVDSDEANRKRIIYRSKQRGWLEVDLLLGRWASQNVMQLSSDELKQYEDILNEETIDIFNYISGKSAVPHRL-DTPMMKRLQEYCLTSPLGKASTEGF 163          
BLAST of EWM27240.1 vs. NCBI_GenBank
Match: gi|1173931383|gb|OQR83814.1| (hypothetical protein THRCLA_23121, partial [Thraustotheca clavata])

HSP 1 Score: 129.028 bits (323), Expect = 6.626e-35
Identity = 65/134 (48.51%), Postives = 86/134 (64.18%), Query Frame = 0
Query:   52 AQVRRIGERTKAQLDDHLRLKTQVPESSLDPTAPPGPVDTDLIRRKRLLYRSKQRGWLEVDLLLGSWAAENVMSLSGPELDEYEKILNMETIDIFNLVNGALAPPPALKGSKILSRLQEYANSSPFGNASTRTY 185
            AQ  R  +R      +H  +KT+ PE+S         +D  +  RKR++YRSKQRGWLEVDLLLG WA+ENVMSLS  EL +YE ILN ETIDIFN ++G    PP +  + ++ RLQ+Y  +SP G AS + +
Sbjct:    1 AQELRAQQRNDQMRKEHFAVKTEFPEASQGDVV----IDAVVANRKRVIYRSKQRGWLEVDLLLGRWASENVMSLSNEELRQYEDILNRETIDIFNFISGKDTVPPEI-DTPMMKRLQDYCKTSPLGKASIKGF 129          
BLAST of EWM27240.1 vs. NCBI_GenBank
Match: gi|675169383|ref|XP_008893576.1| (hypothetical protein PPTG_01936 [Phytophthora parasitica INRA-310] >gi|566021864|gb|ETI44775.1| hypothetical protein F443_10531 [Phytophthora parasitica P1569] >gi|568017121|gb|ETL91298.1| hypothetical protein L917_10128 [Phytophthora parasitica] >gi|568047566|gb|ETM44644.1| hypothetical protein L914_10150 [Phytophthora parasitica] >gi|568107220|gb|ETN21850.1| hypothetical protein PPTG_01936 [Phytophthora parasitica INRA-310] >gi|570325492|gb|ETO73440.1| hypothetical protein F444_10621 [Phytophthora parasitica P1976] >gi|570982638|gb|ETP42694.1| hypothetical protein F442_10428 [Phytophthora parasitica P10297] >gi|970635613|gb|KUF80474.1| Succinate dehydrogenase assembly factor 2 [Phytophthora nicotianae] >gi|970656526|gb|KUF94525.1| hypothetical protein AM588_10007584 [Phytophthora nicotianae])

HSP 1 Score: 127.102 bits (318), Expect = 1.260e-33
Identity = 67/137 (48.91%), Postives = 86/137 (62.77%), Query Frame = 0
Query:   49 LTPAQVRRIGERTKAQLDDHLRLKTQVPESSLDPTAPPGPVDTDLIRRKRLLYRSKQRGWLEVDLLLGSWAAENVMSLSGPELDEYEKILNMETIDIFNLVNGALAPPPALKGSKILSRLQEYANSSPFGNASTRTY 185
            ++  Q +R  ER+ A   DH+  K   P SS         VD+D   RKR++YRSKQRGWLEVDLLLG WA++NVM L+  EL +YE ILN ETIDIFN ++G  A P  L  + ++ RLQEY  +SP G AS   +
Sbjct:   40 ISQDQAKRALERSAAIRADHISAKGDFPASS----QGDHQVDSDEANRKRIIYRSKQRGWLEVDLLLGRWASQNVMQLTSDELQQYEDILNEETIDIFNYISGKSAVPQRL-DTPMMKRLQEYCLTSPLGKASIEGF 171          
BLAST of EWM27240.1 vs. NCBI_GenBank
Match: gi|567959207|gb|ETK84784.1| (hypothetical protein L915_10288 [Phytophthora parasitica] >gi|567987919|gb|ETL38209.1| hypothetical protein L916_10190 [Phytophthora parasitica] >gi|570949364|gb|ETP14621.1| hypothetical protein F441_10468 [Phytophthora parasitica CJ01A1])

HSP 1 Score: 126.716 bits (317), Expect = 1.763e-33
Identity = 67/137 (48.91%), Postives = 85/137 (62.04%), Query Frame = 0
Query:   49 LTPAQVRRIGERTKAQLDDHLRLKTQVPESSLDPTAPPGPVDTDLIRRKRLLYRSKQRGWLEVDLLLGSWAAENVMSLSGPELDEYEKILNMETIDIFNLVNGALAPPPALKGSKILSRLQEYANSSPFGNASTRTY 185
            ++  Q +R  ER+ A   DH+  K   P SS         VD+D   RKR++YRSKQRGWLEVDLLLG WA++NVM L+  EL +YE ILN ETIDIFN ++G  A P  L  + ++ RLQEY   SP G AS   +
Sbjct:   40 ISQDQAKRALERSAAIRADHISAKGDFPASS----QGDHQVDSDEANRKRIIYRSKQRGWLEVDLLLGRWASQNVMQLTSDELQQYEDILNEETIDIFNYISGKSAVPQRL-DTPMMKRLQEYCLMSPLGKASIEAF 171          
The following BLAST results are available for this feature:
BLAST of EWM27240.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585109421|gb|EWM27240.1|9.393e-140100.00mitochondrial protein [Nannochloropsis gaditana][more]
gi|298712750|emb|CBJ33347.1|1.384e-4050.66conserved unknown protein [Ectocarpus siliculosus][more]
gi|1173950128|gb|OQR98107.1|4.312e-3847.13hypothetical protein ACHHYP_20400 [Achlya hypogyna... [more]
gi|813171530|ref|XP_012204520.1|2.245e-3748.03hypothetical protein SPRG_20818 [Saprolegnia paras... [more]
gi|813225712|ref|XP_012211933.1|8.995e-3747.37hypothetical protein SPRG_17211 [Saprolegnia paras... [more]
gi|669151332|ref|XP_008611228.1|7.131e-3646.71hypothetical protein SDRG_07186 [Saprolegnia dicli... [more]
gi|301108613|ref|XP_002903388.1|5.510e-3550.36conserved hypothetical protein [Phytophthora infes... [more]
gi|1173931383|gb|OQR83814.1|6.626e-3548.51hypothetical protein THRCLA_23121, partial [Thraus... [more]
gi|675169383|ref|XP_008893576.1|1.260e-3348.91hypothetical protein PPTG_01936 [Phytophthora para... [more]
gi|567959207|gb|ETK84784.1|1.763e-3348.91hypothetical protein L915_10288 [Phytophthora para... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna3440rna3440Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications