EWM27240.1, cds3431 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM27240.1 vs. NCBI_GenBank
Match: gi|585109421|gb|EWM27240.1| (mitochondrial protein [Nannochloropsis gaditana]) HSP 1 Score: 396.741 bits (1018), Expect = 9.393e-140 Identity = 195/195 (100.00%), Postives = 195/195 (100.00%), Query Frame = 0
Query: 1 MAPPCAGLLFSSAARRSIYGLRNAVVTAFFDTRTLSSSAHSKPPPSPELTPAQVRRIGERTKAQLDDHLRLKTQVPESSLDPTAPPGPVDTDLIRRKRLLYRSKQRGWLEVDLLLGSWAAENVMSLSGPELDEYEKILNMETIDIFNLVNGALAPPPALKGSKILSRLQEYANSSPFGNASTRTYEAVKDRTGLI 195
MAPPCAGLLFSSAARRSIYGLRNAVVTAFFDTRTLSSSAHSKPPPSPELTPAQVRRIGERTKAQLDDHLRLKTQVPESSLDPTAPPGPVDTDLIRRKRLLYRSKQRGWLEVDLLLGSWAAENVMSLSGPELDEYEKILNMETIDIFNLVNGALAPPPALKGSKILSRLQEYANSSPFGNASTRTYEAVKDRTGLI
Sbjct: 1 MAPPCAGLLFSSAARRSIYGLRNAVVTAFFDTRTLSSSAHSKPPPSPELTPAQVRRIGERTKAQLDDHLRLKTQVPESSLDPTAPPGPVDTDLIRRKRLLYRSKQRGWLEVDLLLGSWAAENVMSLSGPELDEYEKILNMETIDIFNLVNGALAPPPALKGSKILSRLQEYANSSPFGNASTRTYEAVKDRTGLI 195
BLAST of EWM27240.1 vs. NCBI_GenBank
Match: gi|298712750|emb|CBJ33347.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 145.976 bits (367), Expect = 1.384e-40 Identity = 77/152 (50.66%), Postives = 99/152 (65.13%), Query Frame = 0
Query: 48 ELTPAQVRRIGERTKAQLDDHLRLKTQVPESSLDPTAPPG-----PVDTDLIRRKRLLYRSKQRGWLEVDLLLGSWAAENVMSLSGPELDEYEKILNMETIDIFNLVNGALAPPPALKGSKILSRLQEYANSSPFGNASTRTYEAVKDRTGL 194
ELTP +V R+G RT+ DH+ L T+ P++SL PPG V D +RRKRL+YRSKQRGWLEVDLLLG+WA NV LS ++D YE ILN+ET+DIFN + G A PPA + +L+RLQ Y S+P G S +Y + K + L
Sbjct: 63 ELTPEEVLRVGARTQEMWKDHVALTTEFPDASL----PPGGHEASSVSPDAVRRKRLVYRSKQRGWLEVDLLLGTWAERNVAGLSAADMDSYEDILNLETVDIFNFITGN-ADPPAFVDAPMLARLQAYVKSNPLGQ-SPASYASAKRESNL 208
BLAST of EWM27240.1 vs. NCBI_GenBank
Match: gi|1173950128|gb|OQR98107.1| (hypothetical protein ACHHYP_20400 [Achlya hypogyna]) HSP 1 Score: 138.272 bits (347), Expect = 4.312e-38 Identity = 74/157 (47.13%), Postives = 98/157 (62.42%), Query Frame = 0
Query: 32 TRTLS---SSAHSKPPPSPELTPAQVRRIGERTKAQLDDHLRLKTQVPESSLDPTAPPGPVDTDLIRRKRLLYRSKQRGWLEVDLLLGSWAAENVMSLSGPELDEYEKILNMETIDIFNLVNGALAPPPALKGSKILSRLQEYANSSPFGNASTRTY 185
TR LS SS H+ PP +T AQ R ER +H +K + P++S + +D D+ RKR++YRSKQRGWLEVDLLLG WA+ENVMSL+ EL +YE ILN ETIDIFN ++G PP + + ++ RLQ Y +SP G AS + +
Sbjct: 15 TRALSTEHSSFHANLPPLS-ITEAQEMRAQERNAQMRKEHFAMKAEFPDASQGDVS----IDADMANRKRVIYRSKQRGWLEVDLLLGRWASENVMSLTKEELSQYEDILNRETIDIFNFISGKDTVPPEI-DTPMMKRLQAYCKTSPLGKASIQGF 165
BLAST of EWM27240.1 vs. NCBI_GenBank
Match: gi|813171530|ref|XP_012204520.1| (hypothetical protein SPRG_20818 [Saprolegnia parasitica CBS 223.65] >gi|641530669|gb|KDO24781.1| hypothetical protein SPRG_20818 [Saprolegnia parasitica CBS 223.65]) HSP 1 Score: 136.732 bits (343), Expect = 2.245e-37 Identity = 73/152 (48.03%), Postives = 95/152 (62.50%), Query Frame = 0
Query: 34 TLSSSAHSKPPPSPELTPAQVRRIGERTKAQLDDHLRLKTQVPESSLDPTAPPGPVDTDLIRRKRLLYRSKQRGWLEVDLLLGSWAAENVMSLSGPELDEYEKILNMETIDIFNLVNGALAPPPALKGSKILSRLQEYANSSPFGNASTRTY 185
T SS H+ PP +T AQ R R + DH +K + P++S A +D D RKR++YRSKQRGWLEVDLLLG WA+ENVMSL+ EL +YE ILN ETIDIFN ++G A PP + + ++ RLQ Y +SP G AS + +
Sbjct: 23 TEHSSFHANLPPLS-ITEAQELRAQVRNEQMRKDHFAIKAEYPDASQGEEA----IDADKANRKRVIYRSKQRGWLEVDLLLGRWASENVMSLTADELRQYEDILNRETIDIFNFISGKDAVPPEI-DTPMMKRLQAYCKTSPLGKASIQGF 168
BLAST of EWM27240.1 vs. NCBI_GenBank
Match: gi|813225712|ref|XP_012211933.1| (hypothetical protein SPRG_17211 [Saprolegnia parasitica CBS 223.65] >gi|641521955|gb|KDO17362.1| hypothetical protein SPRG_17211 [Saprolegnia parasitica CBS 223.65]) HSP 1 Score: 135.191 bits (339), Expect = 8.995e-37 Identity = 72/152 (47.37%), Postives = 94/152 (61.84%), Query Frame = 0
Query: 34 TLSSSAHSKPPPSPELTPAQVRRIGERTKAQLDDHLRLKTQVPESSLDPTAPPGPVDTDLIRRKRLLYRSKQRGWLEVDLLLGSWAAENVMSLSGPELDEYEKILNMETIDIFNLVNGALAPPPALKGSKILSRLQEYANSSPFGNASTRTY 185
T SS H+ PP +T AQ R R + DH +K + P++S A +D D RKR++YRSKQRGWLEVDLLLG WA+ENVMSL+ EL +YE ILN ETIDIFN ++G PP + + ++ RLQ Y +SP G AS + +
Sbjct: 23 TEHSSFHANLPPLS-ITEAQELRAQVRNEQMRKDHFAMKAEYPDASQGEEA----IDADKANRKRVIYRSKQRGWLEVDLLLGRWASENVMSLTADELRQYEDILNRETIDIFNFISGKDVVPPEI-DTPMMKRLQAYCKTSPLGKASIQGF 168
BLAST of EWM27240.1 vs. NCBI_GenBank
Match: gi|669151332|ref|XP_008611228.1| (hypothetical protein SDRG_07186 [Saprolegnia diclina VS20] >gi|530737236|gb|EQC35478.1| hypothetical protein SDRG_07186 [Saprolegnia diclina VS20]) HSP 1 Score: 132.88 bits (333), Expect = 7.131e-36 Identity = 71/152 (46.71%), Postives = 94/152 (61.84%), Query Frame = 0
Query: 34 TLSSSAHSKPPPSPELTPAQVRRIGERTKAQLDDHLRLKTQVPESSLDPTAPPGPVDTDLIRRKRLLYRSKQRGWLEVDLLLGSWAAENVMSLSGPELDEYEKILNMETIDIFNLVNGALAPPPALKGSKILSRLQEYANSSPFGNASTRTY 185
T SS H+ PP +T AQ R R + +H K + P++S A +D D+ RKR++YRSKQRGWLEVDLLLG WA+ENVMSL+ EL +YE ILN ETIDIFN ++G PP + + ++ RLQ Y +SP G AS + +
Sbjct: 23 TEHSSFHANLPPLS-ITEAQELRAQVRNEQMRKEHFASKAEYPDASQGEKA----IDADMANRKRVIYRSKQRGWLEVDLLLGRWASENVMSLTADELRQYEDILNRETIDIFNFISGKDTVPPEI-DTPMMKRLQAYCKTSPLGKASLQGF 168
BLAST of EWM27240.1 vs. NCBI_GenBank
Match: gi|301108613|ref|XP_002903388.1| (conserved hypothetical protein [Phytophthora infestans T30-4] >gi|262097760|gb|EEY55812.1| conserved hypothetical protein [Phytophthora infestans T30-4]) HSP 1 Score: 130.568 bits (327), Expect = 5.510e-35 Identity = 69/137 (50.36%), Postives = 87/137 (63.50%), Query Frame = 0
Query: 49 LTPAQVRRIGERTKAQLDDHLRLKTQVPESSLDPTAPPGPVDTDLIRRKRLLYRSKQRGWLEVDLLLGSWAAENVMSLSGPELDEYEKILNMETIDIFNLVNGALAPPPALKGSKILSRLQEYANSSPFGNASTRTY 185
++ Q +R ER+ A DH+ K P SS VD+D RKR++YRSKQRGWLEVDLLLG WA++NVM LS EL +YE ILN ETIDIFN ++G A P L + ++ RLQEY +SP G AST +
Sbjct: 32 ISQDQAKRALERSAAIRADHISAKGNFPASS----QGDHDVDSDEANRKRIIYRSKQRGWLEVDLLLGRWASQNVMQLSSDELKQYEDILNEETIDIFNYISGKSAVPHRL-DTPMMKRLQEYCLTSPLGKASTEGF 163
BLAST of EWM27240.1 vs. NCBI_GenBank
Match: gi|1173931383|gb|OQR83814.1| (hypothetical protein THRCLA_23121, partial [Thraustotheca clavata]) HSP 1 Score: 129.028 bits (323), Expect = 6.626e-35 Identity = 65/134 (48.51%), Postives = 86/134 (64.18%), Query Frame = 0
Query: 52 AQVRRIGERTKAQLDDHLRLKTQVPESSLDPTAPPGPVDTDLIRRKRLLYRSKQRGWLEVDLLLGSWAAENVMSLSGPELDEYEKILNMETIDIFNLVNGALAPPPALKGSKILSRLQEYANSSPFGNASTRTY 185
AQ R +R +H +KT+ PE+S +D + RKR++YRSKQRGWLEVDLLLG WA+ENVMSLS EL +YE ILN ETIDIFN ++G PP + + ++ RLQ+Y +SP G AS + +
Sbjct: 1 AQELRAQQRNDQMRKEHFAVKTEFPEASQGDVV----IDAVVANRKRVIYRSKQRGWLEVDLLLGRWASENVMSLSNEELRQYEDILNRETIDIFNFISGKDTVPPEI-DTPMMKRLQDYCKTSPLGKASIKGF 129
BLAST of EWM27240.1 vs. NCBI_GenBank
Match: gi|675169383|ref|XP_008893576.1| (hypothetical protein PPTG_01936 [Phytophthora parasitica INRA-310] >gi|566021864|gb|ETI44775.1| hypothetical protein F443_10531 [Phytophthora parasitica P1569] >gi|568017121|gb|ETL91298.1| hypothetical protein L917_10128 [Phytophthora parasitica] >gi|568047566|gb|ETM44644.1| hypothetical protein L914_10150 [Phytophthora parasitica] >gi|568107220|gb|ETN21850.1| hypothetical protein PPTG_01936 [Phytophthora parasitica INRA-310] >gi|570325492|gb|ETO73440.1| hypothetical protein F444_10621 [Phytophthora parasitica P1976] >gi|570982638|gb|ETP42694.1| hypothetical protein F442_10428 [Phytophthora parasitica P10297] >gi|970635613|gb|KUF80474.1| Succinate dehydrogenase assembly factor 2 [Phytophthora nicotianae] >gi|970656526|gb|KUF94525.1| hypothetical protein AM588_10007584 [Phytophthora nicotianae]) HSP 1 Score: 127.102 bits (318), Expect = 1.260e-33 Identity = 67/137 (48.91%), Postives = 86/137 (62.77%), Query Frame = 0
Query: 49 LTPAQVRRIGERTKAQLDDHLRLKTQVPESSLDPTAPPGPVDTDLIRRKRLLYRSKQRGWLEVDLLLGSWAAENVMSLSGPELDEYEKILNMETIDIFNLVNGALAPPPALKGSKILSRLQEYANSSPFGNASTRTY 185
++ Q +R ER+ A DH+ K P SS VD+D RKR++YRSKQRGWLEVDLLLG WA++NVM L+ EL +YE ILN ETIDIFN ++G A P L + ++ RLQEY +SP G AS +
Sbjct: 40 ISQDQAKRALERSAAIRADHISAKGDFPASS----QGDHQVDSDEANRKRIIYRSKQRGWLEVDLLLGRWASQNVMQLTSDELQQYEDILNEETIDIFNYISGKSAVPQRL-DTPMMKRLQEYCLTSPLGKASIEGF 171
BLAST of EWM27240.1 vs. NCBI_GenBank
Match: gi|567959207|gb|ETK84784.1| (hypothetical protein L915_10288 [Phytophthora parasitica] >gi|567987919|gb|ETL38209.1| hypothetical protein L916_10190 [Phytophthora parasitica] >gi|570949364|gb|ETP14621.1| hypothetical protein F441_10468 [Phytophthora parasitica CJ01A1]) HSP 1 Score: 126.716 bits (317), Expect = 1.763e-33 Identity = 67/137 (48.91%), Postives = 85/137 (62.04%), Query Frame = 0
Query: 49 LTPAQVRRIGERTKAQLDDHLRLKTQVPESSLDPTAPPGPVDTDLIRRKRLLYRSKQRGWLEVDLLLGSWAAENVMSLSGPELDEYEKILNMETIDIFNLVNGALAPPPALKGSKILSRLQEYANSSPFGNASTRTY 185
++ Q +R ER+ A DH+ K P SS VD+D RKR++YRSKQRGWLEVDLLLG WA++NVM L+ EL +YE ILN ETIDIFN ++G A P L + ++ RLQEY SP G AS +
Sbjct: 40 ISQDQAKRALERSAAIRADHISAKGDFPASS----QGDHQVDSDEANRKRIIYRSKQRGWLEVDLLLGRWASQNVMQLTSDELQQYEDILNEETIDIFNYISGKSAVPQRL-DTPMMKRLQEYCLMSPLGKASIEAF 171 The following BLAST results are available for this feature:
BLAST of EWM27240.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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