rna344, rna344 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna344
Unique Name	rna344
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1890
Alignment location	CM002455.1:846073..848327 +

Link to JBrowse

Properties


Property Name	Value
Product	histidine biosynthesis trifunctional protein
Orig transcript id	gnl\|cribi\|Naga_100003g152.1821.mrna
Orig protein id	gnl\|cribi\|Naga_100003g152.1821
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002455.1	supercontig	CM002455.1:846073..848327 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100003g152	gene331	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna344	rna344-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM30304.1	cds344	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002455.1:846073..848327+
coding sequence from alignment at CM002455.1:846073..848327+

mRNA sequence

>rna344 ID=rna344|Name=rna344|organism=Nannochloropsis gaditana|type=mRNA|length=1890bp
ACAGGCGATGGATTGCTATGACTGCTCGCAGGCAGACGGTGGCAGCGAGA
CCTATGGTCATCAATGCACCAGAAAGACAGGGTTAGGTTGTGTGAAGAGC
CTGAAATGTCAGACTCACCGCCTTGGACTGAATTGGTCGGCCTGATGGGC
TTGCCGGTTTCGATATACGAAGACCCTTGGCCCATTTTACTCCTTTGTAG
AAAAAAAATAAGACAGCATGAACCTCGACGCATAGCAATTCGTCTCCTTA
CTGCGTGAAAGGAACATGAGCAGCGATGGATGTGTAAAATGACGATTCGC
CATAAGTCGTCCTCTTTTTGGGTCGTATACTATATAAGATATGACCTTAA
AGTTTGTGTATTTTATCATTCTATAAACCATTGATCTTCGTGTGCATCGC
CCCTTTGACCGGACATCTATCTCTAGTCTAATATCATCGCTTTCAATACT
CAGGAATGACATTGGCTCACCCACTTTTGAGTTCAAAAAAGGATGTCTTA
AAATCCATTCCATACTTTAATATCCAGTAGATTGGTCCGTGAGTCGGGTT
GGATGTCGATATGTCGAAAACATCTTGGTCAGGATACACATCTTGAGCAA
AAGGTGTTCATGTCTTATCATGGAAGCACTTATCAAACTTTTACAAATGC
GCTTGGCGAGAGATAAAGCTCCTTTATCCTCTGTGTCAATCCCTCGCTAT
GCTACTTTCATCATTAGTGTCTTTCGAAGCACTCACTAATATTTAGAGGG
CAGGTTACGTAGCTTGACATCATGTGCTGTTTCCAAGGAGATAAAGCGGC
TCGTCCGAAGAAAAGGCCTCTATCATGCGGACATGGTCTCATTTAGATCT
TTTCGTCTCATCGACAGATAGGATCTACACTCAAGTCTACTTGTCCACAT
TCGAAACGGAGATTATGGTGTTGCCACTGCCAATATAAGTACGGGCGGGC
ATTCCTGAGAAGAATATAAACCCATGCAAACTCAGGGAACATGAGGAACC
ATAAGTTTCTGTCCGGGCCGATGAATATGAGAGAAATTCCTGACTCTGCA
TGTCAGAAAAAATCCGTCGGAATGCATTGCATTGCCCGCCTTTTTGACAA
GAGACGTGTCATCCTTGTTGTAAAAGTAGATAACAGCATGCTTTGCTCGA
AGGTCCGTCAGTGCCGCCATGTCACCATTTTTATTTGTCAATGCAAAAGA
TGGAGCTGAGGATCCAATTTCTAAGCCCATTAGGTTCTTTCCTGCTTTTT
TGCAAATGTTTTGGCCTTGGTCTTTTTCCTGTGTTGCTATACGATTCAGC
ATACTAGATACCGATTCCTTGCTCTGGTGCTGTTTTTGGTCAAGGATGTC
ACTCGGAATGTTCTTACTCCACCTCTCTTTGTCCTCGCTTTTAATTTCTA
ACCTGCCAATTTCGTTACTCTTTTTTTCAAGTGTGGTGCTTTGCTCTTCT
TTGTCCTCATCAAGCTACGCCTTCTTGGAGACAGGTACTTAATTTCTTGG
CTTTTACTTCTTGCGTCCTCTTCCACAATTATCTCTTCCTCTTTCCCTTG
TTGTTTTACTTTGTAGGCTTTCTCCGCATTGTGTTGGTCTATCTGTTCAC
TCGTGTGCTCCTGGCGCTTTTCTTGTTCCTGTTCCTCATTCCAACTCAGG
CTCTTGGTTTCTTTGCTTTTCTGCTCTTCTTCCATCTTCGGCTCCCCATG
CTTCATAGTTAACGACCTTAAGACTGAACAAATTTGATGTCTGGATATTC
TCATATGAAGGTGGTGTCTGTCTTACGTACATGGCGAACTCGCCTAAAGT
CAAGATAAGAGATTTTTTCGGGTCTCTATAGCTTTCTTGGAAATCTTGTT
ACGGAACTTGTAAACTTCACTTTCGCAACGATACTGAGGA

protein sequence of rna344

>rna344-protein ID=rna344-protein|Name=rna344|organism=Nannochloropsis gaditana|type=polypeptide|length=355bp
MLIFKLPLEDVLSHPDLAKRYCLLGSVQLQTSESKALPSIVPEGLLQRHN
IVLGPITLGQVDEVRPWLHNGARKAFFAVPRETVVEHLKIQLAGLPRERV
GVSVVLEGKDAVEADAMAGGQFLEHIAKLYEVASSVQINFGNDSIKSEES
LICLANAIHHGIKCQGATSLSQELVVEAPASMQWSAEGIKALNKESIRVL
LHGAPSEIINCHLVAGLKEPVLPLKQAAVDGVGAFLACLRTDRPDGLFTT
VVVDECNVALGLVYSSAESVRTSVAELRGVYFSRSRGGLWRKGDSSGALQ
ELVGLDVDCDSDALRFVVRQRGKPPVSAQKAANGYRKGLNLTIAAALKYG
LFPHV

mRNA from alignment at CM002455.1:846073..848327+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna344 ID=rna344|Name=rna344|organism=Nannochloropsis gaditana|type=mRNA|length=2255bp|location=Sequence derived from alignment at CM002455.1:846073..848327+ (Nannochloropsis gaditana)
GAGCGGTGAGGGGCCCAGGTGGCCAAATGCAGCAACTATGCGTGACAGCC
AAGTGAGCATTTATTTCTGTCCATTGTTAAGGGTGCTTTCAATTTCATTG
CACTAATTTGCCGTACAAGACAAGTCAGGACTCCATACAGGTGGTGAAAG
GTTTGTAACTAGGATCGTGGTCAAAAGGTACCTCGCTTGGAGCTATAACT
TCCACGCTCTTTTCTGAAATGTAATACACGCTACTCTTTGTCACAAAGTC
AGTCTGTCAAGACTTTCCGCTGATGCTTATTTTCAAGCTACCGCTGGAAG
ATGTTCTCTCTCACCCTGACCTTGCCAAGCGTTACTGTCTCCTGGGATCC
GTGCAACTTCAGACTTCAGAGTCGAAGGCTCTGCCATCCATGTACGTAAG
TTGAGGTATTGCATGACATGGTTTCAACAAACTTTGTGATAGGGGTGAAC
TTCACTTTCAAGGATGACTGACGGTCTGAATCGCCACATCTTCCCTTTAT
CCGCCGACCTCCCACGTGGTCAACAATTTGTACTGAACGTTTCCGACTTT
TCGTACGCTGTACGCACTGCGATTGGTCTACTTTGTAAAAActtatatat
atataataTTTATCATTGTCCTTTCTTACTCCCTTCACATCCAGAGTCCC
TGAAGGATTGCTGCAGCGTCATAATATAGTCCTGGGGCCGATTACCCTTG
GTCAAGTGGACGAAGTGCGGCCTTGGCTTCACAATGGCGCTCGGAAGGCA
TTTTTCGCTGTGCCAAGGGAAACAGTTGTCGAGCACTTGAAAATTCAGCT
CGCTGGTCTTCCTCGTGAGCGTGTGGGTGTCAGCGTTGTATTGGAAGGCA
AGGACGCGGTAGAAGCGGATGCCATGGCTGGCGGTCAATTTTTAGAGCAC
ATCGCGAAATTGTACGAAGTTGCATCATCTGTGCAGATAAATTTTGGGAA
TGACTCAATTAAAAGTGAGGAATCCCTAATATGCTTGGCAAACGCTATCC
ATCATGGCATCAAATGCCAAGGAGCGACATCTCTCTCTCAGGAACTGGTC
GTAGAGGCACCCGCTTCGATGCAGTGGTCCGCTGAAGGCATCAAAGCGCT
AAACAAAGAGAGTATACGGGTCTTGCTTCATGGGGCTCCTTCAGAAATAA
TAAATTGTCATCTTGTCGCAGGTTTGAAGGAGCCGGTGCTTCCCTTGAAA
CAAGCAGCAGTGGACGGCGTGGGTGCTTTCCTTGCTTGCCTGCGGACAGA
TCGGCCCGATGGGCTCTTTACAACAGTCGTCGTTGACGAATGTAATGTGG
CTTTGGGACTTGTCTACTCAAGCGCGGAAAGTGTGCGGACGTCGGTGGCC
GAGCTTCGTGGAGTCTATTTTTCACGTTCCCGTGGCGGTCTTTGGCGCAA
AGGTGATTCAAGCGGAGCTTTGCAGGAATTAGTGGGTTTAGACGTGGATT
GTGACTCAGATGCACTGCGTTTTGTGGTGCGACAACGCGGAAAGCCTCCG
GTAAGTGCCCAGAAAGCTGCAAATGGTTATCGAAAAGGACTGAACCTTAC
GATTGCTGCAGCGCTAAAGTACGGTTTATTCCCTCATGTGTAGGCCTTTT
GTCACCTAAACCGGCGTAGTTGCTGGCAAGAGGACAGGGGTTTAGGCGCG
TTACAACGCACGTTAGAAAATCGCTTGCATCAGGCTGTCGAGGGCTCTTA
CACTCAAAAGCTTTTTCGGGACCGCGATTTACTGCGTCACAAATTAGTCG
AGGAAGCTCAGGAACTTAGCGAGGCTAAGGAGTGCGAAGACGTCGCTGCT
GAAGCAGCAGATGTATTCTATTTTGCCATGGTGCGTTGTGTGGCTGCGGG
GGTGACTTTGGAAGACATAGAGCGTCATTTAGATGCACGAACACTCAAGC
TTCAGAGAAGACCAGGCAACACCAAAGCACACCGCATCGATGCCGCAGAA
AAGATCCTATCGAGTCCTCTCCCGTCACGCACATGAAGCTATGTGTCAAT
TTAATATTGGTATGAAGTAAGATTGTGGTCAGAAGGAAATTTTGACACGA
TAAGAAGCTGTCCGGTCCGAGCAACAGTGTTCGGTAGTCACACACAAGTC
TGTTGAAGCCATCACAAATGTGGGAAGCAAGAAATAATTTTAATTACAAT
TGCATCTTCTACTTTATGTGTTCAGCTAAAGATGCGGGTCGGGTCGTGTT
TGTAGACAACGGGCTTTCAGTATGAGGGACTTTCAGCTTTGGGCGACGCC
CGCAC

Coding sequence (CDS) from alignment at CM002455.1:846073..848327+

>rna344 ID=rna344|Name=rna344|organism=Nannochloropsis gaditana|type=CDS|length=2136bp|location=Sequence derived from alignment at CM002455.1:846073..848327+ (Nannochloropsis gaditana)
ATGCTTATTTTCAAGCTACCGCTGGAAGATGTTCTCTCTCACCCTGACCT
TGCCAAGCGTTACTGTCTCCTGGGATCCGTGCAACTTCAGACTTCAGAGT
CGAAGGCTCTGCCATCCATAGTCCCTGAAGGATTGCTGCAGCGTCATAAT
ATAGTCCTGGGGCCGATTACCCTTGGTCAAGTGGACGAAGTGCGGCCTTG
GCTTCACAATGGCGCTCGGAAGGCATTTTTCGCTGTGCCAAGGGAAACAG
TTGTCGAGCACTTGAAAATTCAGCTCGCTGGTCTTCCTCGTGAGCGTGTG
GGTGTCAGCGTTGTATTGGAAGGCAAGGACGCGGTAGAAGCGGATGCCAT
GGCTGGCGGTCAATTTTTAGAGCACATCGCGAAATTGTACGAAGTTGCAT
CATCTGTGCAGATAAATTTTGGGAATGACTCAATTAAAAGTGAGGAATCC
CTAATATGCTTGGCAAACGCTATCCATCATGGCATCAAATGCCAAGGAGC
GACATCTCTCTCTCAGGAACTGGTCGTAGAGGCACCCGCTTCGATGCAGT
GGTCCGCTGAAGGCATCAAAGCGCTAAACAAAGAGAGTATACGGGTCTTG
CTTCATGGGGCTCCTTCAGAAATAATAAATTGTCATCTTGTCGCAGGTTT
GAAGGAGCCGGTGCTTCCCTTGAAACAAGCAGCAGTGGACGGCGTGGGTG
CTTTCCTTGCTTGCCTGCGGACAGATCGGCCCGATGGGCTCTTTACAACA
GTCGTCGTTGACGAATGTAATGTGGCTTTGGGACTTGTCTACTCAAGCGC
GGAAAGTGTGCGGACGTCGGTGGCCGAGCTTCGTGGAGTCTATTTTTCAC
GTTCCCGTGGCGGTCTTTGGCGCAAAGGTGATTCAAGCGGAGCTTTGCAG
GAATTAGTGGGTTTAGACGTGGATTGTGACTCAGATGCACTGCGTTTTGT
GGTGCGACAACGCGGAAAGCCTCCGGTAAGTGCCCAGAAAGCTGCAAATG
GTTATCGAAAAGGACTGAACCTTACGATTGCTGCAGCGCTAAAGTACGGT
TTATTCCCTCATGTGTAGATGCTTATTTTCAAGCTACCGCTGGAAGATGT
TCTCTCTCACCCTGACCTTGCCAAGCGTTACTGTCTCCTGGGATCCGTGC
AACTTCAGACTTCAGAGTCGAAGGCTCTGCCATCCATAGTCCCTGAAGGA
TTGCTGCAGCGTCATAATATAGTCCTGGGGCCGATTACCCTTGGTCAAGT
GGACGAAGTGCGGCCTTGGCTTCACAATGGCGCTCGGAAGGCATTTTTCG
CTGTGCCAAGGGAAACAGTTGTCGAGCACTTGAAAATTCAGCTCGCTGGT
CTTCCTCGTGAGCGTGTGGGTGTCAGCGTTGTATTGGAAGGCAAGGACGC
GGTAGAAGCGGATGCCATGGCTGGCGGTCAATTTTTAGAGCACATCGCGA
AATTGTACGAAGTTGCATCATCTGTGCAGATAAATTTTGGGAATGACTCA
ATTAAAAGTGAGGAATCCCTAATATGCTTGGCAAACGCTATCCATCATGG
CATCAAATGCCAAGGAGCGACATCTCTCTCTCAGGAACTGGTCGTAGAGG
CACCCGCTTCGATGCAGTGGTCCGCTGAAGGCATCAAAGCGCTAAACAAA
GAGAGTATACGGGTCTTGCTTCATGGGGCTCCTTCAGAAATAATAAATTG
TCATCTTGTCGCAGGTTTGAAGGAGCCGGTGCTTCCCTTGAAACAAGCAG
CAGTGGACGGCGTGGGTGCTTTCCTTGCTTGCCTGCGGACAGATCGGCCC
GATGGGCTCTTTACAACAGTCGTCGTTGACGAATGTAATGTGGCTTTGGG
ACTTGTCTACTCAAGCGCGGAAAGTGTGCGGACGTCGGTGGCCGAGCTTC
GTGGAGTCTATTTTTCACGTTCCCGTGGCGGTCTTTGGCGCAAAGGTGAT
TCAAGCGGAGCTTTGCAGGAATTAGTGGGTTTAGACGTGGATTGTGACTC
AGATGCACTGCGTTTTGTGGTGCGACAACGCGGAAAGCCTCCGGTAAGTG
CCCAGAAAGCTGCAAATGGTTATCGAAAAGGACTGAACCTTACGATTGCT
GCAGCGCTAAAGTACGGTTTATTCCCTCATGTGTAG

Synonyms

Publications