rna3437, rna3437 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna3437
Unique Name	rna3437
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1144
Alignment location	CM002461.1:419539..421647 +

Link to JBrowse

Properties


Property Name	Value
Product	ser thr kinase
Orig transcript id	gnl\|cribi\|Naga_100038g35.7705.mrna
Orig protein id	gnl\|cribi\|Naga_100038g35.7705
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002461.1	supercontig	CM002461.1:419539..421647 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100038g35	gene3311	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna3437	rna3437-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM27250.1	cds3428	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002461.1:419539..421647+
coding sequence from alignment at CM002461.1:419539..421647+

mRNA sequence

>rna3437 ID=rna3437|Name=rna3437|organism=Nannochloropsis gaditana|type=mRNA|length=1144bp
ACGTGCTCTACGGCAGATATACAAGCACGTGTACATGGCTTTAAACTATC
TCTTTAATTACGACGATTCATGTACAGGAAGGCCGGTATTGTTTTCTGTG
CTGTCGCATTTGCTGCGGTAAAGGTCCATTGGAGCTTCCTCCTCTCTGAG
GAAGCACACAGGAAATCGGGAGCCGGAGTGTTGCGCTTCAAGATGATTGT
AGAGGAGAATACCCTTGAGCAGCGGCGTGCGGGACTCAAGGCGGAGCTGC
AGAACATTGAACGACAAATTTTCGACTTGGAGGGGAGTTATTTGGACGAC
ACATTGACGACAGGCAATATCCTGCGGGGCTGGGATGCGGCGTTGACGAA
TGGGAGCACGAGGTAAGAAGAGGGTGGGATGGAGGGGCGGATTAAATTCT
GGCAAGCCTGACGAATGGAAAGACCGGGGCACGTTTGATGCACACAGTCC
TTTGTACGAGCTTGACCAACCATGTCACTCATGTTCATTTCCGTTTTGGG
AAAACGTTCCAGTGCGGCCTCTGCTGTCAAGGGAAAACAACGCGCGAGAA
AGCTCCAACGAGAGGACCGCTTGTTCTCTCTCTCCTCCGTCACGTCACCG
CCAATGGTGACTGTGAGGAGAGCCGTGACCGAGGAGGGAGATGAGGAGGA
AGGTGATCAGGAGGAGGAAGAAGAGGAGGAGGAGGAAGAGGAAGAGGAAG
AAGAGGGGGAAGAAGAGGAAGAGGGCCAGGAAGAGGAGGAGGAGGAAGAG
GAGGAGGAAGAAGGTGAAGAAGAGGAGGAGGAGGGGGAAGGGGAAGAAGA
AGAAGAAGAAGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAAG
TGAGCCCAAAGCAGCGTAAAAGGCCGTCGACAACTTCGAGCAGGCGGAGC
GCGAAGACAGGGGTCAGAGGCCGAGGCAGTGGTAGGGGCGGGGGCAGGCG
ACCACCTGGAGGGAGGGCTCAGAAGCGGTCGAGGCGACCCGCCAAGAGAA
GCCCCAGCCCGAAGAAGAAAGCAGCGAGGCGCCGCCGGTGATAGGGCCTA
GATGGGTGCAAGCCTGGAGTGCTGCGTGCCCCTGTGGCCAGGCGTTTCTA
TACATTGATTAAAACGCAAAGCAAATAAGTAAAAGGAATGTGTA

protein sequence of rna3437

>rna3437-protein ID=rna3437-protein|Name=rna3437|organism=Nannochloropsis gaditana|type=polypeptide|length=419bp
MVFCCCLPPSFEPPCPPPPAYSATQSAQAEGPPVPPTDTAGRAVEHSFSV
LSEEELGAAVAGGEGNGNGHHHDSTSARPHADADGLVHVDGENVCETDEE
EDGEEHDWDCHMTDLAALTYPPGQAEADPIKVNEYAVDGFLGAGAFGNVK
RARREVGPPPYQTYAIKIMSRHRLRRFKSSVMSVGGSHMEVKTGIDMMRN
EIRIMRHLYHRNVVLLFEVINDPSEDSIFMIMEYLEGGISMDYDKKTKRF
RSPLTGGVLPPPTACKLFFGLVAGLQYLHGKGICHRDIKPENLLLTDGTK
LRITDFGCAQRIKDTGEGGEGGGRGPGEALRHLRHLQFPRARVLLGRGLL
PLAGGRVGGGSLPVLLPLRAPALPEGWARPPLRGHPGRGSSDPPRGGRRR
GRGRGRGEWRGGGQGRPKR

mRNA from alignment at CM002461.1:419539..421647+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna3437 ID=rna3437|Name=rna3437|organism=Nannochloropsis gaditana|type=mRNA|length=2109bp|location=Sequence derived from alignment at CM002461.1:419539..421647+ (Nannochloropsis gaditana)
AGTGCTAATAGGATCTCCTCTCCCCGAACCCGCGCCAGGCACAGGCGAGG
ACTGTTGGATAGTATGGTCTTCTGCTGCTGTTTACCGCCGTCCTTTGagc
ccccttgccccccccctccggcttATTCGGCCACTCAGTCGGCGCAAGCG
GAGggcccgcccgtccctcccacggaCACGGCCGGGAGGGCAGTGGAGCA
CAGTTTCTCAGTCCTCAGGTGAGACAAATTCGGTGTAACGTGATTTGCAT
GATCTTGCGTTCCTCACTTTGGACATTGGCTTCCTTCATATCTCGCTTGG
GCCTCCGCTACGCATCATCGATgtgggcagcgaggaggagttggGGGCTG
CAGtcgcagggggggaaggaaacggcaATGGCCACCACCATGATTCTACC
TCCGCCAGACCCCATGCGGATGCCGATGGTTTGGTGCACGTGGATGGTGA
AAATGTCTGTgagacggacgaggaggaggacggggaggagcacgatTGGG
ACTGCCACATGACGGACCTGGCGGCTCTTACTTATCCACCGGGGCAAGCA
GAGGCGGACCCGATCAAGGTGAACGAATACGCCGTCGACGGCTTCTTGGG
CGCAGGCGCCTTTGGGAATGTGAAACGTGCCCGAAGGGAAGTAGGTCCGC
CCCCCTACCAGACCTATGCCATCAAGATCATGAGCCGTCATCGACTCCGG
CGCTTCAAATCCAGCGTGATGTCGGTGGGGGGAAGCCACATGGAGGTGAA
GACCGGGATAGACATGGTGAGTGAAGAATgtcaaagaaagaggcgagcgA
CTGGTGCAACTCGCGCTTCCCTAGAGGGAGATGCTgactcttccctccac
cgtcaTACGTGCTTGCCCCGCCAGATGCGCAACGAGATCCGAATCATGCG
GCATCTGTACCACCGGAATGTGGTGTTACTGTTCGAGGTCATCAACGACC
CCTCGGAGGACAGCATCTTCATGATCATGGAGGTAGGgaggcccccgcct
ctcctcccttttcaaacactcccctccctcctctttttctgcccCTGAAG
CTCTCACGCCGATCCCCTCATcccccgtttccctcctccccgcgccTCAG
TacctggagggcgggatcTCCATGGACTACGACAAGAAGACCAAGCGCTT
CCGGAGCCCCCTCACGGGCGGtgtcctcccaccccccaccgcctgcaAGC
TCTTCTTCGGCCTTGTCGCCGGCCTCCAGTATCTGCACGGCAAAGGCATC
TGCCACCGCGACATTAAGGTCCGCTACAGACCcagccctctctccctcca
atttcccctcctttccctttcgcccGCCCTGCGGGACATTCTaagcccct
tccctccctcccttcttccccccctccctctcccctcgtgCACCCCCCAG
CCCGAAAATCTGCTCCTCACAGACGGGACCAAGCTGCGGATAACGGATTT
CGGATGTGCCCAGCGGATCAAGGAcacaggagagggaggggagggggggg
gccggggacCGGGGGAAGCTCTTCGACACCTCCGGCACCTACAATTTCCT
CGCGCCCGAGTGCTGCTCGGGCGAGGGCTTCTTCCCCTGGCCGGTGGACG
TGTGGGCGGCGGGTCTTTGCCTGtactgcttcctcttcgggcGCCTGCCC
TTCCAGAAGGCTGGgctcgcccccctcttcgcgGCCatccaggaagagga
agttcAGATCCCccccgtggaggaagacggcgagggaggggccgcgggag
gggagaatggagagggggaggccaggggcgGCCAAAGCGTTGAGCCCGAG
CTGCATGAGATGCTGGAGGGTTTGTTCTTGAAAGACCCGGGAGCCAGGTG
GACGTTGGAGCGGCTGCGAGCGCATTCGTGTCTGGCacaggcgcggaggg
aggacgaggaggaggaccggaggcgggacgaggaggaggagcgggagagg
agggagagggaggaaagggagcgtgAAAGGCGGAATGGAATcgatgaagg
gggggggggaggcgagcaggagCTGACTCAGGCGACCAGCTAGtcagcga
gggaggagtgaggcGGGAAGCAGGCGTGTAAGAAAGTCAAGAGAGACCGC
GAGAAGCCC

Coding sequence (CDS) from alignment at CM002461.1:419539..421647+

>rna3437 ID=rna3437|Name=rna3437|organism=Nannochloropsis gaditana|type=CDS|length=6300bp|location=Sequence derived from alignment at CM002461.1:419539..421647+ (Nannochloropsis gaditana)
ATGGTCTTCTGCTGCTGTTTACCGCCGTCCTTTGagcccccttgcccccc
ccctccggcttATTCGGCCACTCAGTCGGCGCAAGCGGAGggcccgcccg
tccctcccacggaCACGGCCGGGAGGGCAGTGGAGCACAGTTTCTCAGTC
CTCAGcgaggaggagttggGGGCTGCAGtcgcagggggggaaggaaacgg
caATGGCCACCACCATGATTCTACCTCCGCCAGACCCCATGCGGATGCCG
ATGGTTTGGTGCACGTGGATGGTGAAAATGTCTGTgagacggacgaggag
gaggacggggaggagcacgatTGGGACTGCCACATGACGGACCTGGCGGC
TCTTACTTATCCACCGGGGCAAGCAGAGGCGGACCCGATCAAGGTGAACG
AATACGCCGTCGACGGCTTCTTGGGCGCAGGCGCCTTTGGGAATGTGAAA
CGTGCCCGAAGGGAAGTAGGTCCGCCCCCCTACCAGACCTATGCCATCAA
GATCATGAGCCGTCATCGACTCCGGCGCTTCAAATCCAGCGTGATGTCGG
TGGGGGGAAGCCACATGGAGGTGAAGACCGGGATAGACATGATGCGCAAC
GAGATCCGAATCATGCGGCATCTGTACCACCGGAATGTGGTGTTACTGTT
CGAGGTCATCAACGACCCCTCGGAGGACAGCATCTTCATGATCATGGAGT
acctggagggcgggatcTCCATGGACTACGACAAGAAGACCAAGCGCTTC
CGGAGCCCCCTCACGGGCGGtgtcctcccaccccccaccgcctgcaAGCT
CTTCTTCGGCCTTGTCGCCGGCCTCCAGTATCTGCACGGCAAAGGCATCT
GCCACCGCGACATTAAGCCCGAAAATCTGCTCCTCACAGACGGGACCAAG
CTGCGGATAACGGATTTCGGATGTGCCCAGCGGATCAAGGAcacaggaga
gggaggggagggggggggccggggacCGGGGGAAGCTCTTCGACACCTCC
GGCACCTACAATTTCCTCGCGCCCGAGTGCTGCTCGGGCGAGGGCTTCTT
CCCCTGGCCGGTGGACGTGTGGGCGGCGGGTCTTTGCCTGtactgcttcc
tcttcgggcGCCTGCCCTTCCAGAAGGCTGGgctcgcccccctcttcgcg
GCCatccaggaagaggaagttcAGATCCCccccgtggaggaagacggcga
gggaggggccgcgggaggggagaatggagagggggaggccaggggcgGCC
AAAGCGTTGAATGGTCTTCTGCTGCTGTTTACCGCCGTCCTTTGagcccc
cttgccccccccctccggcttATTCGGCCACTCAGTCGGCGCAAGCGGAG
ggcccgcccgtccctcccacggaCACGGCCGGGAGGGCAGTGGAGCACAG
TTTCTCAGTCCTCAGcgaggaggagttggGGGCTGCAGtcgcaggggggg
aaggaaacggcaATGGCCACCACCATGATTCTACCTCCGCCAGACCCCAT
GCGGATGCCGATGGTTTGGTGCACGTGGATGGTGAAAATGTCTGTgagac
ggacgaggaggaggacggggaggagcacgatTGGGACTGCCACATGACGG
ACCTGGCGGCTCTTACTTATCCACCGGGGCAAGCAGAGGCGGACCCGATC
AAGGTGAACGAATACGCCGTCGACGGCTTCTTGGGCGCAGGCGCCTTTGG
GAATGTGAAACGTGCCCGAAGGGAAGTAGGTCCGCCCCCCTACCAGACCT
ATGCCATCAAGATCATGAGCCGTCATCGACTCCGGCGCTTCAAATCCAGC
GTGATGTCGGTGGGGGGAAGCCACATGGAGGTGAAGACCGGGATAGACAT
GATGCGCAACGAGATCCGAATCATGCGGCATCTGTACCACCGGAATGTGG
TGTTACTGTTCGAGGTCATCAACGACCCCTCGGAGGACAGCATCTTCATG
ATCATGGAGTacctggagggcgggatcTCCATGGACTACGACAAGAAGAC
CAAGCGCTTCCGGAGCCCCCTCACGGGCGGtgtcctcccaccccccaccg
cctgcaAGCTCTTCTTCGGCCTTGTCGCCGGCCTCCAGTATCTGCACGGC
AAAGGCATCTGCCACCGCGACATTAAGCCCGAAAATCTGCTCCTCACAGA
CGGGACCAAGCTGCGGATAACGGATTTCGGATGTGCCCAGCGGATCAAGG
AcacaggagagggaggggagggggggggccggggacCGGGGGAAGCTCTT
CGACACCTCCGGCACCTACAATTTCCTCGCGCCCGAGTGCTGCTCGGGCG
AGGGCTTCTTCCCCTGGCCGGTGGACGTGTGGGCGGCGGGTCTTTGCCTG
tactgcttcctcttcgggcGCCTGCCCTTCCAGAAGGCTGGgctcgcccc
cctcttcgcgGCCatccaggaagaggaagttcAGATCCCccccgtggagg
aagacggcgagggaggggccgcgggaggggagaatggagagggggaggcc
aggggcgGCCAAAGCGTTGAATGGTCTTCTGCTGCTGTTTACCGCCGTCC
TTTGagcccccttgccccccccctccggcttATTCGGCCACTCAGTCGGC
GCAAGCGGAGggcccgcccgtccctcccacggaCACGGCCGGGAGGGCAG
TGGAGCACAGTTTCTCAGTCCTCAGcgaggaggagttggGGGCTGCAGtc
gcagggggggaaggaaacggcaATGGCCACCACCATGATTCTACCTCCGC
CAGACCCCATGCGGATGCCGATGGTTTGGTGCACGTGGATGGTGAAAATG
TCTGTgagacggacgaggaggaggacggggaggagcacgatTGGGACTGC
CACATGACGGACCTGGCGGCTCTTACTTATCCACCGGGGCAAGCAGAGGC
GGACCCGATCAAGGTGAACGAATACGCCGTCGACGGCTTCTTGGGCGCAG
GCGCCTTTGGGAATGTGAAACGTGCCCGAAGGGAAGTAGGTCCGCCCCCC
TACCAGACCTATGCCATCAAGATCATGAGCCGTCATCGACTCCGGCGCTT
CAAATCCAGCGTGATGTCGGTGGGGGGAAGCCACATGGAGGTGAAGACCG
GGATAGACATGATGCGCAACGAGATCCGAATCATGCGGCATCTGTACCAC
CGGAATGTGGTGTTACTGTTCGAGGTCATCAACGACCCCTCGGAGGACAG
CATCTTCATGATCATGGAGTacctggagggcgggatcTCCATGGACTACG
ACAAGAAGACCAAGCGCTTCCGGAGCCCCCTCACGGGCGGtgtcctccca
ccccccaccgcctgcaAGCTCTTCTTCGGCCTTGTCGCCGGCCTCCAGTA
TCTGCACGGCAAAGGCATCTGCCACCGCGACATTAAGCCCGAAAATCTGC
TCCTCACAGACGGGACCAAGCTGCGGATAACGGATTTCGGATGTGCCCAG
CGGATCAAGGAcacaggagagggaggggagggggggggccggggacCGGG
GGAAGCTCTTCGACACCTCCGGCACCTACAATTTCCTCGCGCCCGAGTGC
TGCTCGGGCGAGGGCTTCTTCCCCTGGCCGGTGGACGTGTGGGCGGCGGG
TCTTTGCCTGtactgcttcctcttcgggcGCCTGCCCTTCCAGAAGGCTG
GgctcgcccccctcttcgcgGCCatccaggaagaggaagttcAGATCCCc
cccgtggaggaagacggcgagggaggggccgcgggaggggagaatggaga
gggggaggccaggggcgGCCAAAGCGTTGAATGGTCTTCTGCTGCTGTTT
ACCGCCGTCCTTTGagcccccttgccccccccctccggcttATTCGGCCA
CTCAGTCGGCGCAAGCGGAGggcccgcccgtccctcccacggaCACGGCC
GGGAGGGCAGTGGAGCACAGTTTCTCAGTCCTCAGcgaggaggagttggG
GGCTGCAGtcgcagggggggaaggaaacggcaATGGCCACCACCATGATT
CTACCTCCGCCAGACCCCATGCGGATGCCGATGGTTTGGTGCACGTGGAT
GGTGAAAATGTCTGTgagacggacgaggaggaggacggggaggagcacga
tTGGGACTGCCACATGACGGACCTGGCGGCTCTTACTTATCCACCGGGGC
AAGCAGAGGCGGACCCGATCAAGGTGAACGAATACGCCGTCGACGGCTTC
TTGGGCGCAGGCGCCTTTGGGAATGTGAAACGTGCCCGAAGGGAAGTAGG
TCCGCCCCCCTACCAGACCTATGCCATCAAGATCATGAGCCGTCATCGAC
TCCGGCGCTTCAAATCCAGCGTGATGTCGGTGGGGGGAAGCCACATGGAG
GTGAAGACCGGGATAGACATGATGCGCAACGAGATCCGAATCATGCGGCA
TCTGTACCACCGGAATGTGGTGTTACTGTTCGAGGTCATCAACGACCCCT
CGGAGGACAGCATCTTCATGATCATGGAGTacctggagggcgggatcTCC
ATGGACTACGACAAGAAGACCAAGCGCTTCCGGAGCCCCCTCACGGGCGG
tgtcctcccaccccccaccgcctgcaAGCTCTTCTTCGGCCTTGTCGCCG
GCCTCCAGTATCTGCACGGCAAAGGCATCTGCCACCGCGACATTAAGCCC
GAAAATCTGCTCCTCACAGACGGGACCAAGCTGCGGATAACGGATTTCGG
ATGTGCCCAGCGGATCAAGGAcacaggagagggaggggagggggggggcc
ggggacCGGGGGAAGCTCTTCGACACCTCCGGCACCTACAATTTCCTCGC
GCCCGAGTGCTGCTCGGGCGAGGGCTTCTTCCCCTGGCCGGTGGACGTGT
GGGCGGCGGGTCTTTGCCTGtactgcttcctcttcgggcGCCTGCCCTTC
CAGAAGGCTGGgctcgcccccctcttcgcgGCCatccaggaagaggaagt
tcAGATCCCccccgtggaggaagacggcgagggaggggccgcgggagggg
agaatggagagggggaggccaggggcgGCCAAAGCGTTGAATGGTCTTCT
GCTGCTGTTTACCGCCGTCCTTTGagcccccttgccccccccctccggct
tATTCGGCCACTCAGTCGGCGCAAGCGGAGggcccgcccgtccctcccac
ggaCACGGCCGGGAGGGCAGTGGAGCACAGTTTCTCAGTCCTCAGcgagg
aggagttggGGGCTGCAGtcgcagggggggaaggaaacggcaATGGCCAC
CACCATGATTCTACCTCCGCCAGACCCCATGCGGATGCCGATGGTTTGGT
GCACGTGGATGGTGAAAATGTCTGTgagacggacgaggaggaggacgggg
aggagcacgatTGGGACTGCCACATGACGGACCTGGCGGCTCTTACTTAT
CCACCGGGGCAAGCAGAGGCGGACCCGATCAAGGTGAACGAATACGCCGT
CGACGGCTTCTTGGGCGCAGGCGCCTTTGGGAATGTGAAACGTGCCCGAA
GGGAAGTAGGTCCGCCCCCCTACCAGACCTATGCCATCAAGATCATGAGC
CGTCATCGACTCCGGCGCTTCAAATCCAGCGTGATGTCGGTGGGGGGAAG
CCACATGGAGGTGAAGACCGGGATAGACATGATGCGCAACGAGATCCGAA
TCATGCGGCATCTGTACCACCGGAATGTGGTGTTACTGTTCGAGGTCATC
AACGACCCCTCGGAGGACAGCATCTTCATGATCATGGAGTacctggaggg
cgggatcTCCATGGACTACGACAAGAAGACCAAGCGCTTCCGGAGCCCCC
TCACGGGCGGtgtcctcccaccccccaccgcctgcaAGCTCTTCTTCGGC
CTTGTCGCCGGCCTCCAGTATCTGCACGGCAAAGGCATCTGCCACCGCGA
CATTAAGCCCGAAAATCTGCTCCTCACAGACGGGACCAAGCTGCGGATAA
CGGATTTCGGATGTGCCCAGCGGATCAAGGAcacaggagagggaggggag
ggggggggccggggacCGGGGGAAGCTCTTCGACACCTCCGGCACCTACA
ATTTCCTCGCGCCCGAGTGCTGCTCGGGCGAGGGCTTCTTCCCCTGGCCG
GTGGACGTGTGGGCGGCGGGTCTTTGCCTGtactgcttcctcttcgggcG
CCTGCCCTTCCAGAAGGCTGGgctcgcccccctcttcgcgGCCatccagg
aagaggaagttcAGATCCCccccgtggaggaagacggcgagggaggggcc
gcgggaggggagaatggagagggggaggccaggggcgGCCAAAGCGTTGA

Synonyms

Publications