rna3432, rna3432 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna3432
Unique Name	rna3432
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1986
Alignment location	CM002461.1:403652..404934 +

Link to JBrowse

Properties


Property Name	Value
Product	atp synthase subunit delta
Orig transcript id	gnl\|cribi\|Naga_100038g29.7693.mrna
Orig protein id	gnl\|cribi\|Naga_100038g29.7693
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002461.1	supercontig	CM002461.1:403652..404934 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100038g29	gene3306	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna3432	rna3432-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM27238.1	cds3423	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002461.1:403652..404934+
coding sequence from alignment at CM002461.1:403652..404934+

mRNA sequence

>rna3432 ID=rna3432|Name=rna3432|organism=Nannochloropsis gaditana|type=mRNA|length=1986bp
AACGTGAACGCTTGTGTGGGCGAATGTCTGCTTCCCCACGACATGGAACA
AAATATAGGCTGCTCTCTTCATCTCCTTGCAGGCCGGTGTCGACGTACGA
AAGGGCGCCCACAAAGCGGACAACAACCTCGGGCACAAGCTCTCTCCCTT
TGCCCTCTCTCGCCTCGCCCTTCGCAGGCTCGAGGAGGCCCTGAGAGGGA
GGTGCCTATTCCATCATATCAGCTACCGTGGCCCTTCGACTCGAGTCTCG
AGGGCTTCGAGGGGTACCTTTTCCATCATATCATCCCGACCAAGGGACCT
TTCCCCTCACATCATGGTGCTTTAGTATGCTTGACCTCCCGACTACAAGC
CCGTGCAGTTCACACTCATGCAACATTTCACGACGCAATACGTCATCCAT
GACAAGACAGAAAGTTTGTGGGTTCAAGAAATAGGGTGCGCTTTATCCCT
GCTATTTTCGCAAATGAAAGGGAGATGTGAGGCTATGTGTAGTATACAAG
AGCAAGAAGAACGACAAAAACAGCACGATATAAGCCAATTTGAGGCAACG
GATGCGACAAGGATGCTGCGGCGGCATTTGAGGAAAATGGACCCCGAGGT
ATATTGAGAAAATGAAAGTAGAAACATTTTCTTTTGTCGGACTCACACTG
ATCTTTTCCTCACAACCTCAACCTCCTGGAAGAGAGCTGTAAAGCGGTAT
CAACGGGCCGCTGATGGACGTGGCGAGACAGCCGGTGACGTACGTCCCCT
CAAATGGTTAGAGCGAACTGTGGCGCACTTGTGGAGTGTTGCGCTGAGCG
TGTTAGAAAGCCAGGGTCAGGAGAAAGCGCCGAAAAAAGAGGATCTTTTG
CGACTTGTGGAGCTGTATGACTTCATGAGTGATCGGTTTATGGCTGTGCG
AAAGGACATCATAGTGCAAGGCTTGGCGGGCTCCGGTGCACAGGCCATCT
ACAAACGCATCATTCGTTTCCACATTTTGTTCGACTACCTTTTGACAGAG
CAGGTGCCACCAGTCTTTGATGCGCACATGGGACTGAATGCTGTTAGATC
TGGGCTTGCGACGCTGCTAGACTTTTTCCAAAATGCACATAAACATGGGC
GAATGGCTGACTCTGAAAACGAAGTTGAACCTCATTTGGACGAGTTTCTC
GCTTATTACACATTACTTCAACTGCACGATGTCCTCTCGAGTGGGGAAAG
ACGGGAAGCTGGACCCTGTGACGGCGACGGGTGGACAAAGCTGTTTTTAC
ATACCTATCGGGTCCTAGAGGAGACAGAGCTAAAATCTTGCGAAAATTCC
AAGACGAAACTGCGAAGACGAGATTTTTCACTTCCCAGAACGCAATGGGC
GCTGCAGTATGCGAAAGCTTTAGCGGCTGGTAACTGGGCACGCTTTCATC
GATTGTGCATGAACTGGGATCTGGTTTTGAGAGAGGAGGATAGAACATTT
CATGTGCTCGCTCGGTGTTTGATTTTCAAGCTTTTCCCCATCACGCGGCG
ACGGAGCATGGAGTTGTGGAGCAAAGTTATGTTTCAAAAAGAGAAGATGT
CAGTAGACGAAGTGCAGCGCCTTCTTTGCTTTGGAAATGCGAAGCAAACT
TTCGACTTCATGAGACTTTTCGGTTTGGAACTATCCTGTTACTGTACTTG
TACTAGTAGTGATATGAAAGAGGGTGGTCGAAAGCAAAACGCATGGGAGC
GACCCGAGTCATCATCTACAGCAACAGTGACAGGTTGTAGCCAAAAAAAG
GGCATCAATTGTCATCTATACTACAAACCGCGAGATGCTCTGCTTCATTC
CCCATCGATTGCCCAAACTTATGAAGATCGTCAAAACATTCAAGCGACGC
TGTGTCCGAGACAAGACTCCTGGGTGCTTGACGCTGCCAACATGGGGGAG
GAAAATCTACGGGAAGGGAAGATAGCGACGGAAAAGCTCCAAGAATTATG
GAAAGGAATGAAAAAAAAGTAAATGGACGATGAAAA

protein sequence of rna3432

>rna3432-protein ID=rna3432-protein|Name=rna3432|organism=Nannochloropsis gaditana|type=polypeptide|length=174bp
MLVARGIFQLAARRGVHTTRILASTAPAAADASSGDNLILNFSLPAASIY
RNKPVASVVIPGLAGEYGVTKNHSPVIAELKAGVVQIVHETGQAPEKFFV
SGGFALTHANSVTDIAVVEAAKLEDIDVEEVPKIYAEAMKDYNAAAEGSK
EKVEAQIEVEVAKSLAGALGVALT

mRNA from alignment at CM002461.1:403652..404934+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna3432 ID=rna3432|Name=rna3432|organism=Nannochloropsis gaditana|type=mRNA|length=1283bp|location=Sequence derived from alignment at CM002461.1:403652..404934+ (Nannochloropsis gaditana)
TCGCTCCGTCATCTTCGATTTTCCAATTCTCACCGCAGCATTTCTCATGC
CTTCTCAATTTCGAATCATCTCACAAAACAGCGTCGACCCATGCTTGTTG
CACGAGGAATCTTTCAACTGGCCGCCCGCCGCGGCGTGCACACAACGCGG
ATCCTGGCCTCGACTGCTCGTGAGTTTACGCGGGGAAAGAGCCGCCGGGA
TGTCATCATTCGTGACCTGCAGTCAGTGATTTTTAGAGATTCACCTTACT
CACCTCTCTCTTACTTAATACTACAATACCTGACTCACAGCTGCCGCGGC
GGACGCATCTTCGGGCGACAACTTAATCCTgaacttctccctcccggctg
CCAGCATCTACCGCAACAAGCCCGTGGCGTCTGTCGTCATTCCGGTAAGT
AGAGCCTGCATTGATAGTAACCTTTTCCCGTTAAATCCAATATATTTCGT
CCATTTACTTCACTCGCATGCGCATAGCACCCAGTCATCCCAATGaaccc
tctctcctccgacTAAATCTACCATTACACAGGGGCTTGCTGGTGAATAC
GGTGTGACAAAGAATCACTCTCCTGTCATCGCTGAGCTGAAGGCGGGTGT
GGTTCAGATTGTGCATGAGACAGGACAGGCACCGGAGAAATTCTTTGTCA
GCGGTGGCTTCGCTCTGACCCATGCCAACTCTGTCACGGTGCGTACACGG
ATCCCGCGTGGTCTGGGAGAGAGACGGgcactggagggagggggacggtt
TTGGCTTTCGGAAACATCAGCAGCATCAGACCTAGTTGCGCACACGGTAA
CTAGTCAATAATTTAGGGACATGCAACGCTTGGCGAGCCTGTGGAGTTCG
GGTCCGAGGAGGGGTCCTTGGCCCATGTCTGCCGCCGTGTCATGTGATTT
TCTGAAAGCCtctgtcctttctttccaacATACATACAGGACATTGCGGT
TGTGGAAGCCGCCAAACTTGAGGACATAGACGTAGAGGAGGTGCCCAAGA
TCTACGCCGAGGCCATGAAAGACTACAATGCGGCAGCGGAAGGGAGCAAA
GAGAAGGTTGAGGCGCAAATTGAAGTGGAGGTCGCCAAATCGCTGGCAGG
GGCGCTGGGTGTGGCTCTCACGTGAGGGAAAAGAGCGAAACCGTGTGAGT
CAGTGGATATGCGGGGGGATTATGCTTATTGAGAGTGGTGAGGTGGAACG
GACCGTGGAAGGGCCTCTCCGAAGCGAGGGAGCCCTGGAGTTCACAGAAG
cacagaagaggaaaaatgtTCTGGGTCGCACGG

Coding sequence (CDS) from alignment at CM002461.1:403652..404934+

>rna3432 ID=rna3432|Name=rna3432|organism=Nannochloropsis gaditana|type=CDS|length=2100bp|location=Sequence derived from alignment at CM002461.1:403652..404934+ (Nannochloropsis gaditana)
ATGCTTGTTGCACGAGGAATCTTTCAACTGGCCGCCCGCCGCGGCGTGCA
CACAACGCGGATCCTGGCCTCGACTGCTCCTGCCGCGGCGGACGCATCTT
CGGGCGACAACTTAATCCTgaacttctccctcccggctgCCAGCATCTAC
CGCAACAAGCCCGTGGCGTCTGTCGTCATTCCGGGGCTTGCTGGTGAATA
CGGTGTGACAAAGAATCACTCTCCTGTCATCGCTGAGCTGAAGGCGGGTG
TGGTTCAGATTGTGCATGAGACAGGACAGGCACCGGAGAAATTCTTTGTC
AGCGGTGGCTTCGCTCTGACCCATGCCAACTCTGTCACGGACATTGCGGT
TGTGGAAGCCGCCAAACTTGAGGACATAGACGTAGAGGAGGTGCCCAAGA
TCTACGCCGAGGCCATGAAAGACTACAATGCGGCAGCGGAAGGGAGCAAA
GAGAAGGTTGAGGCGCAAATTGAAGTGGAGGTCGCCAAATCGCTGGCAGG
GGCGCTGGGTGTGGCTCTCACGTGAATGCTTGTTGCACGAGGAATCTTTC
AACTGGCCGCCCGCCGCGGCGTGCACACAACGCGGATCCTGGCCTCGACT
GCTCCTGCCGCGGCGGACGCATCTTCGGGCGACAACTTAATCCTgaactt
ctccctcccggctgCCAGCATCTACCGCAACAAGCCCGTGGCGTCTGTCG
TCATTCCGGGGCTTGCTGGTGAATACGGTGTGACAAAGAATCACTCTCCT
GTCATCGCTGAGCTGAAGGCGGGTGTGGTTCAGATTGTGCATGAGACAGG
ACAGGCACCGGAGAAATTCTTTGTCAGCGGTGGCTTCGCTCTGACCCATG
CCAACTCTGTCACGGACATTGCGGTTGTGGAAGCCGCCAAACTTGAGGAC
ATAGACGTAGAGGAGGTGCCCAAGATCTACGCCGAGGCCATGAAAGACTA
CAATGCGGCAGCGGAAGGGAGCAAAGAGAAGGTTGAGGCGCAAATTGAAG
TGGAGGTCGCCAAATCGCTGGCAGGGGCGCTGGGTGTGGCTCTCACGTGA
ATGCTTGTTGCACGAGGAATCTTTCAACTGGCCGCCCGCCGCGGCGTGCA
CACAACGCGGATCCTGGCCTCGACTGCTCCTGCCGCGGCGGACGCATCTT
CGGGCGACAACTTAATCCTgaacttctccctcccggctgCCAGCATCTAC
CGCAACAAGCCCGTGGCGTCTGTCGTCATTCCGGGGCTTGCTGGTGAATA
CGGTGTGACAAAGAATCACTCTCCTGTCATCGCTGAGCTGAAGGCGGGTG
TGGTTCAGATTGTGCATGAGACAGGACAGGCACCGGAGAAATTCTTTGTC
AGCGGTGGCTTCGCTCTGACCCATGCCAACTCTGTCACGGACATTGCGGT
TGTGGAAGCCGCCAAACTTGAGGACATAGACGTAGAGGAGGTGCCCAAGA
TCTACGCCGAGGCCATGAAAGACTACAATGCGGCAGCGGAAGGGAGCAAA
GAGAAGGTTGAGGCGCAAATTGAAGTGGAGGTCGCCAAATCGCTGGCAGG
GGCGCTGGGTGTGGCTCTCACGTGAATGCTTGTTGCACGAGGAATCTTTC
AACTGGCCGCCCGCCGCGGCGTGCACACAACGCGGATCCTGGCCTCGACT
GCTCCTGCCGCGGCGGACGCATCTTCGGGCGACAACTTAATCCTgaactt
ctccctcccggctgCCAGCATCTACCGCAACAAGCCCGTGGCGTCTGTCG
TCATTCCGGGGCTTGCTGGTGAATACGGTGTGACAAAGAATCACTCTCCT
GTCATCGCTGAGCTGAAGGCGGGTGTGGTTCAGATTGTGCATGAGACAGG
ACAGGCACCGGAGAAATTCTTTGTCAGCGGTGGCTTCGCTCTGACCCATG
CCAACTCTGTCACGGACATTGCGGTTGTGGAAGCCGCCAAACTTGAGGAC
ATAGACGTAGAGGAGGTGCCCAAGATCTACGCCGAGGCCATGAAAGACTA
CAATGCGGCAGCGGAAGGGAGCAAAGAGAAGGTTGAGGCGCAAATTGAAG
TGGAGGTCGCCAAATCGCTGGCAGGGGCGCTGGGTGTGGCTCTCACGTGA

Synonyms

Publications