EWM27238.1, cds3423 (CDS) Nannochloropsis gaditana

Overview
NameEWM27238.1
Unique Namecds3423
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002461.1:403742..403820 +
Alignment locationCM002461.1:403942..404045 +
Alignment locationCM002461.1:404184..404339 +
Alignment locationCM002461.1:404591..404776 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM27238.1
Productatp synthase subunit delta
Orig transcript idgnl|cribi|Naga_100038g29.7693.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002461.1supercontigCM002461.1:403742..403820 +
CM002461.1supercontigCM002461.1:403942..404045 +
CM002461.1supercontigCM002461.1:404184..404339 +
CM002461.1supercontigCM002461.1:404591..404776 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0005215transporter activity
GO:0016740transferase activity
GO:0046961proton-transporting ATPase activity, rotational mechanism
GO:0046933proton-transporting ATP synthase activity, rotational mechanism
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
GO:0016020membrane
GO:0045261proton-transporting ATP synthase complex, catalytic core F(1)
Vocabulary: Biological Process
TermDefinition
GO:0006810transport
GO:0006139nucleobase-containing compound metabolic process
GO:0009058biosynthetic process
GO:0015986ATP synthesis coupled proton transport
Vocabulary: INTERPRO
TermDefinition
IPR001469ATPase_F1-cplx_dsu/esu
IPR020546ATPase_F1-cplx_dsu/esu_N
Homology
BLAST of EWM27238.1 vs. NCBI_GenBank
Match: gi|585109419|gb|EWM27238.1| (atp synthase subunit delta [Nannochloropsis gaditana])

HSP 1 Score: 345.125 bits (884), Expect = 4.665e-120
Identity = 174/174 (100.00%), Postives = 174/174 (100.00%), Query Frame = 0
Query:    1 MLVARGIFQLAARRGVHTTRILASTAPAAADASSGDNLILNFSLPAASIYRNKPVASVVIPGLAGEYGVTKNHSPVIAELKAGVVQIVHETGQAPEKFFVSGGFALTHANSVTDIAVVEAAKLEDIDVEEVPKIYAEAMKDYNAAAEGSKEKVEAQIEVEVAKSLAGALGVALT 174
            MLVARGIFQLAARRGVHTTRILASTAPAAADASSGDNLILNFSLPAASIYRNKPVASVVIPGLAGEYGVTKNHSPVIAELKAGVVQIVHETGQAPEKFFVSGGFALTHANSVTDIAVVEAAKLEDIDVEEVPKIYAEAMKDYNAAAEGSKEKVEAQIEVEVAKSLAGALGVALT
Sbjct:    1 MLVARGIFQLAARRGVHTTRILASTAPAAADASSGDNLILNFSLPAASIYRNKPVASVVIPGLAGEYGVTKNHSPVIAELKAGVVQIVHETGQAPEKFFVSGGFALTHANSVTDIAVVEAAKLEDIDVEEVPKIYAEAMKDYNAAAEGSKEKVEAQIEVEVAKSLAGALGVALT 174          
BLAST of EWM27238.1 vs. NCBI_GenBank
Match: gi|298710990|emb|CBJ32297.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 161.77 bits (408), Expect = 1.268e-47
Identity = 78/136 (57.35%), Postives = 98/136 (72.06%), Query Frame = 0
Query:   38 LILNFSLPAASIYRNKPVASVVIPGLAGEYGVTKNHSPVIAELKAGVVQIVHETGQAPEKFFVSGGFALTHANSVTDIAVVEAAKLEDIDVEEVPKIYAEAMKDYNAAAEGSKEKVEAQIEVEVAKSLAGALGVAL 173
            + LNF LP  +IY++K V  V+IPG AGEYGVT  HSP++AELK GVVQ+VHE GQ PE FFVS GFALTH  SVTDI  +EA ++E+ID   V   Y  A ++ +AA EGS+E  EAQ+ VE  K++A A+GV L
Sbjct:   32 MKLNFCLPHETIYKDKDVDQVIIPGSAGEYGVTAGHSPIVAELKPGVVQVVHEAGQEPENFFVSAGFALTHPTSVTDITAIEAVRVEEIDEGAVKSSYDAAKREMDAATEGSREAAEAQVAVETTKAMAAAIGVVL 167          
BLAST of EWM27238.1 vs. NCBI_GenBank
Match: gi|1210515312|dbj|GAX25764.1| (F-type H+-transporting ATPase subunit delta [Fistulifera solaris])

HSP 1 Score: 150.984 bits (380), Expect = 1.766e-43
Identity = 71/135 (52.59%), Postives = 98/135 (72.59%), Query Frame = 0
Query:   40 LNFSLPAASIYRNKPVASVVIPGLAGEYGVTKNHSPVIAELKAGVVQIVHETGQA-PEKFFVSGGFALTHANSVTDIAVVEAAKLEDIDVEEVPKIYAEAMKDYNAAAEGSKEKVEAQIEVEVAKSLAGALGVAL 173
            LNF LP  ++Y+   V SV++PG+ GEYG+T NH P +++LK GVV+I+HE G A PEK+FV+GG+ALTH +S TD+   EA KL+DID  EV K Y  A   +++AA GS E+ EAQIE+E+ K +  A+GV+L
Sbjct:   28 LNFCLPQETLYKGASVHSVILPGMGGEYGITANHVPYVSQLKPGVVKILHEEGSADPEKYFVAGGYALTHPDSTTDVICPEAVKLDDIDPSEVAKKYDAARTKFSSAAAGSIEQAEAQIEMEITKEMGMAIGVSL 162          
BLAST of EWM27238.1 vs. NCBI_GenBank
Match: gi|1210525766|dbj|GAX15372.1| (F-type H+-transporting ATPase subunit delta [Fistulifera solaris])

HSP 1 Score: 149.828 bits (377), Expect = 5.252e-43
Identity = 70/135 (51.85%), Postives = 97/135 (71.85%), Query Frame = 0
Query:   40 LNFSLPAASIYRNKPVASVVIPGLAGEYGVTKNHSPVIAELKAGVVQIVHETGQA-PEKFFVSGGFALTHANSVTDIAVVEAAKLEDIDVEEVPKIYAEAMKDYNAAAEGSKEKVEAQIEVEVAKSLAGALGVAL 173
            LNF LP  ++Y+   V SV++PG+ GEYG+T NH P +++LK GVV+I+HE G A PEK+FV+GG+ALTH +S TD+   EA KL+DID  EV K Y  A   +++A  GS E+ EAQIE+E+ K +  A+GV+L
Sbjct:   28 LNFCLPQETLYKGASVHSVILPGMGGEYGITANHVPYVSQLKPGVVKILHEEGSADPEKYFVAGGYALTHPDSTTDVICPEAVKLDDIDPSEVAKKYDAARTKFSSATAGSIEQAEAQIEMEITKEMGMAIGVSL 162          
BLAST of EWM27238.1 vs. NCBI_GenBank
Match: gi|1072236011|gb|OEU20739.1| (epsilon subunit of F1F0-ATP synthase N-terminal domain-containing protein [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 136.346 bits (342), Expect = 1.394e-37
Identity = 66/134 (49.25%), Postives = 95/134 (70.90%), Query Frame = 0
Query:   40 LNFSLPAASIYRNKPVASVVIPGLAGEYGVTKNHSPVIAELKAGVVQIVHETGQAPEKFFVSGGFALTHANSVTDIAVVEAAKLEDIDVEEVPKIYAEAMKDYNAAAEGSKEKVEAQIEVEVAKSLAGALGVAL 173
            LNFS+P  SIY    V  V+IPG+ GEYGVT NH P +A++K G++ ++ ++ ++ EK+FV+GG+A+THANSVTD+  VEA K++D+DV  V   Y  A     +A  GS+E+ EAQI++EV K++  ALGV L
Sbjct:   43 LNFSVPYESIYNGASVEQVIIPGVEGEYGVTANHVPYVAQMKPGILTVMFDSSES-EKYFVAGGYAVTHANSVTDVVCVEAVKVDDLDVSVVSANYEAAKSAAGSATAGSQEEAEAQIDMEVNKTMGAALGVTL 175          
BLAST of EWM27238.1 vs. NCBI_GenBank
Match: gi|397569263|gb|EJK46633.1| (hypothetical protein THAOC_34688, partial [Thalassiosira oceanica])

HSP 1 Score: 127.872 bits (320), Expect = 1.180e-33
Identity = 73/155 (47.10%), Postives = 102/155 (65.81%), Query Frame = 0
Query:   20 RILASTAPAAADASSGDNLILNFSLPAASIYRNKPVASVVIPGLAGEYGVTKNHSPVIAELKAGVVQIVHETGQAPEKFFVSGGFALTHANSVTDIAVVEAAKLEDIDVEEVPKIYAEAMKDYNAAAE-GSKEKVEAQIEVEVAKSLAGALGVAL 173
            R  +S APA+        + LNF+LP  +++ +  V+SVV+PG  GEY VT +H P++AELKAG++ + H  G+  EK+FV GGF+LTH  S TDI   EA K++D+DV  V   Y EA K   A+AE GS +  EA IEVEV +++ GALG++L
Sbjct:   75 RRFSSPAPASG------LMKLNFNLPQQTLFDSTEVSSVVVPGAMGEYEVTADHVPIVAELKAGMLTVKHGGGEE-EKYFVPGGFSLTHEGSTTDIVCPEAVKVDDLDVSAVTANY-EAAKSRAASAEAGSADAAEAMIEVEVNRAMGGALGLSL 221          
BLAST of EWM27238.1 vs. NCBI_GenBank
Match: gi|698782397|ref|XP_009824242.1| (hypothetical protein H257_02353 [Aphanomyces astaci] >gi|574120292|gb|ETV85770.1| hypothetical protein H257_02353 [Aphanomyces astaci])

HSP 1 Score: 123.25 bits (308), Expect = 1.594e-32
Identity = 72/159 (45.28%), Postives = 98/159 (61.64%), Query Frame = 0
Query:    7 IFQLAARRGVHTT--RILASTAPAAADASSGDNLILNFSLPAASIYRNKPVASVVIPGLAGEYGVTKNHSPVIAELKAGVVQIVHETGQAPEKFFVSGGFALTHANSVTDIAVVEAAKLEDID---VEEVPKIYAEAMKDYNAAAEGSKEKVEAQIEVE 160
            +   A RR +HTT  R  A  AP++A A+    + LN S P  + Y+   V  V +PGL GEYGVT  H+P+I++LK GV+ +  E  +  +KFF +GGFA THA+S TDIA VE  K+EDID    E   + Y +A++    AA+G+ EKVEAQI  E
Sbjct:    1 MLSRAVRRSIHTTALRAAAENAPSSAVAT---KVTLNLSTPHQAFYKGVQVDLVQVPGLVGEYGVTAGHTPIISQLKPGVIAVHEERDKVVKKFFTAGGFAFTHADSTTDIAAVELIKVEDIDASAAEAGVQKYKQALEQ---AADGTPEKVEAQIAYE 153          
BLAST of EWM27238.1 vs. NCBI_GenBank
Match: gi|1173962112|gb|OQS07925.1| (ATP synthase subunit delta' [Thraustotheca clavata])

HSP 1 Score: 122.094 bits (305), Expect = 3.149e-32
Identity = 69/166 (41.57%), Postives = 96/166 (57.83%), Query Frame = 0
Query:    7 IFQLAARRGVHTTRILASTAPAAADASSG---DNLILNFSLPAASIYRNKPVASVVIPGLAGEYGVTKNHSPVIAELKAGVVQIVHETGQAPEKFFVSGGFALTHANSVTDIAVVEAAKLEDIDVEEVPKIYAEAMKDYNAAAEGSKEKVEAQIEVEVAKSLAGAL 169
            +   A RR +H+T +      AAA+ +SG     + LN + P  S Y+   V  V IPGL GEYG+T  H+P+I++LK GV+ +  E  +  +KFF +GGFA THA+SVTDIA VE  K+EDID         +  +  + A  GS E+VEAQI  E   ++  AL
Sbjct:    1 MLSRAVRRSIHSTAL-----RAAAEQTSGAAATKVTLNLNTPHQSFYKKTEVDLVQIPGLVGEYGITARHTPIISQLKPGVIIVHEERDKVVKKFFTAGGFAFTHADSVTDIACVELVKVEDIDASAAEAGVTKYKQLMDQATPGSVERVEAQIAYETHVAMVAAL 161          
BLAST of EWM27238.1 vs. NCBI_GenBank
Match: gi|813117496|ref|XP_012195659.1| (ATP synthase F1 [Saprolegnia parasitica CBS 223.65] >gi|641539818|gb|KDO33613.1| ATP synthase F1 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 122.094 bits (305), Expect = 3.253e-32
Identity = 69/159 (43.40%), Postives = 98/159 (61.64%), Query Frame = 0
Query:   11 AARRGVHTTRILASTAPAAADASSGDNLILNFSLPAASIYRNKPVASVVIPGLAGEYGVTKNHSPVIAELKAGVVQIVHETGQAPEKFFVSGGFALTHANSVTDIAVVEAAKLEDIDVEEVPKIYAEAMKDYNAAAEGSKEKVEAQIEVEVAKSLAGAL 169
            AARR +H+T + A+   A+A  ++   + LN + P  S Y+   V  V IPGL GEYG+T  H+P+I++LK GV+ +  E  +  +KFF +GGFA THA+SVTDIA VE  K+EDID         +  +  + AA+GS E+VEAQI  E   ++  AL
Sbjct:    5 AARRSIHSTALRAAAENASAAGAT--KVTLNLNTPHQSFYKKAEVDLVQIPGLVGEYGITARHTPIISQLKPGVIVVHEERDKVVKKFFTAGGFAFTHADSVTDIACVELVKVEDIDASAAEAGVTKYKQLMDQAAQGSVERVEAQIAYETHVAMVAAL 161          
BLAST of EWM27238.1 vs. NCBI_GenBank
Match: gi|669160842|ref|XP_008615983.1| (hypothetical protein SDRG_11712 [Saprolegnia diclina VS20] >gi|530732415|gb|EQC30657.1| hypothetical protein SDRG_11712 [Saprolegnia diclina VS20])

HSP 1 Score: 122.094 bits (305), Expect = 3.587e-32
Identity = 69/159 (43.40%), Postives = 98/159 (61.64%), Query Frame = 0
Query:   11 AARRGVHTTRILASTAPAAADASSGDNLILNFSLPAASIYRNKPVASVVIPGLAGEYGVTKNHSPVIAELKAGVVQIVHETGQAPEKFFVSGGFALTHANSVTDIAVVEAAKLEDIDVEEVPKIYAEAMKDYNAAAEGSKEKVEAQIEVEVAKSLAGAL 169
            AARR +H+T + A+   A+A  ++   + LN + P  S Y+   V  V IPGL GEYG+T  H+P+I++LK GV+ +  E  +  +KFF +GGFA THA+SVTDIA VE  K+EDID         +  +  + AA+GS E+VEAQI  E   ++  AL
Sbjct:    5 AARRSIHSTALRAAAENASAAGAT--KVTLNLNTPHQSFYKKAEVDLVQIPGLVGEYGITARHTPIISQLKPGVIIVHEERDKVVKKFFTAGGFAFTHADSVTDIACVELVKVEDIDASAAEAGVTKYKQLMDQAAQGSVERVEAQIAYETHVAMVAAL 161          
The following BLAST results are available for this feature:
BLAST of EWM27238.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585109419|gb|EWM27238.1|4.665e-120100.00atp synthase subunit delta [Nannochloropsis gadita... [more]
gi|298710990|emb|CBJ32297.1|1.268e-4757.35conserved unknown protein [Ectocarpus siliculosus][more]
gi|1210515312|dbj|GAX25764.1|1.766e-4352.59F-type H+-transporting ATPase subunit delta [Fistu... [more]
gi|1210525766|dbj|GAX15372.1|5.252e-4351.85F-type H+-transporting ATPase subunit delta [Fistu... [more]
gi|1072236011|gb|OEU20739.1|1.394e-3749.25epsilon subunit of F1F0-ATP synthase N-terminal do... [more]
gi|397569263|gb|EJK46633.1|1.180e-3347.10hypothetical protein THAOC_34688, partial [Thalass... [more]
gi|698782397|ref|XP_009824242.1|1.594e-3245.28hypothetical protein H257_02353 [Aphanomyces astac... [more]
gi|1173962112|gb|OQS07925.1|3.149e-3241.57ATP synthase subunit delta' [Thraustotheca clavata... [more]
gi|813117496|ref|XP_012195659.1|3.253e-3243.40ATP synthase F1 [Saprolegnia parasitica CBS 223.65... [more]
gi|669160842|ref|XP_008615983.1|3.587e-3243.40hypothetical protein SDRG_11712 [Saprolegnia dicli... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna3432rna3432Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications