EWM27238.1, cds3423 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM27238.1 vs. NCBI_GenBank
Match: gi|585109419|gb|EWM27238.1| (atp synthase subunit delta [Nannochloropsis gaditana]) HSP 1 Score: 345.125 bits (884), Expect = 4.665e-120 Identity = 174/174 (100.00%), Postives = 174/174 (100.00%), Query Frame = 0
Query: 1 MLVARGIFQLAARRGVHTTRILASTAPAAADASSGDNLILNFSLPAASIYRNKPVASVVIPGLAGEYGVTKNHSPVIAELKAGVVQIVHETGQAPEKFFVSGGFALTHANSVTDIAVVEAAKLEDIDVEEVPKIYAEAMKDYNAAAEGSKEKVEAQIEVEVAKSLAGALGVALT 174
MLVARGIFQLAARRGVHTTRILASTAPAAADASSGDNLILNFSLPAASIYRNKPVASVVIPGLAGEYGVTKNHSPVIAELKAGVVQIVHETGQAPEKFFVSGGFALTHANSVTDIAVVEAAKLEDIDVEEVPKIYAEAMKDYNAAAEGSKEKVEAQIEVEVAKSLAGALGVALT
Sbjct: 1 MLVARGIFQLAARRGVHTTRILASTAPAAADASSGDNLILNFSLPAASIYRNKPVASVVIPGLAGEYGVTKNHSPVIAELKAGVVQIVHETGQAPEKFFVSGGFALTHANSVTDIAVVEAAKLEDIDVEEVPKIYAEAMKDYNAAAEGSKEKVEAQIEVEVAKSLAGALGVALT 174
BLAST of EWM27238.1 vs. NCBI_GenBank
Match: gi|298710990|emb|CBJ32297.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 161.77 bits (408), Expect = 1.268e-47 Identity = 78/136 (57.35%), Postives = 98/136 (72.06%), Query Frame = 0
Query: 38 LILNFSLPAASIYRNKPVASVVIPGLAGEYGVTKNHSPVIAELKAGVVQIVHETGQAPEKFFVSGGFALTHANSVTDIAVVEAAKLEDIDVEEVPKIYAEAMKDYNAAAEGSKEKVEAQIEVEVAKSLAGALGVAL 173
+ LNF LP +IY++K V V+IPG AGEYGVT HSP++AELK GVVQ+VHE GQ PE FFVS GFALTH SVTDI +EA ++E+ID V Y A ++ +AA EGS+E EAQ+ VE K++A A+GV L
Sbjct: 32 MKLNFCLPHETIYKDKDVDQVIIPGSAGEYGVTAGHSPIVAELKPGVVQVVHEAGQEPENFFVSAGFALTHPTSVTDITAIEAVRVEEIDEGAVKSSYDAAKREMDAATEGSREAAEAQVAVETTKAMAAAIGVVL 167
BLAST of EWM27238.1 vs. NCBI_GenBank
Match: gi|1210515312|dbj|GAX25764.1| (F-type H+-transporting ATPase subunit delta [Fistulifera solaris]) HSP 1 Score: 150.984 bits (380), Expect = 1.766e-43 Identity = 71/135 (52.59%), Postives = 98/135 (72.59%), Query Frame = 0
Query: 40 LNFSLPAASIYRNKPVASVVIPGLAGEYGVTKNHSPVIAELKAGVVQIVHETGQA-PEKFFVSGGFALTHANSVTDIAVVEAAKLEDIDVEEVPKIYAEAMKDYNAAAEGSKEKVEAQIEVEVAKSLAGALGVAL 173
LNF LP ++Y+ V SV++PG+ GEYG+T NH P +++LK GVV+I+HE G A PEK+FV+GG+ALTH +S TD+ EA KL+DID EV K Y A +++AA GS E+ EAQIE+E+ K + A+GV+L
Sbjct: 28 LNFCLPQETLYKGASVHSVILPGMGGEYGITANHVPYVSQLKPGVVKILHEEGSADPEKYFVAGGYALTHPDSTTDVICPEAVKLDDIDPSEVAKKYDAARTKFSSAAAGSIEQAEAQIEMEITKEMGMAIGVSL 162
BLAST of EWM27238.1 vs. NCBI_GenBank
Match: gi|1210525766|dbj|GAX15372.1| (F-type H+-transporting ATPase subunit delta [Fistulifera solaris]) HSP 1 Score: 149.828 bits (377), Expect = 5.252e-43 Identity = 70/135 (51.85%), Postives = 97/135 (71.85%), Query Frame = 0
Query: 40 LNFSLPAASIYRNKPVASVVIPGLAGEYGVTKNHSPVIAELKAGVVQIVHETGQA-PEKFFVSGGFALTHANSVTDIAVVEAAKLEDIDVEEVPKIYAEAMKDYNAAAEGSKEKVEAQIEVEVAKSLAGALGVAL 173
LNF LP ++Y+ V SV++PG+ GEYG+T NH P +++LK GVV+I+HE G A PEK+FV+GG+ALTH +S TD+ EA KL+DID EV K Y A +++A GS E+ EAQIE+E+ K + A+GV+L
Sbjct: 28 LNFCLPQETLYKGASVHSVILPGMGGEYGITANHVPYVSQLKPGVVKILHEEGSADPEKYFVAGGYALTHPDSTTDVICPEAVKLDDIDPSEVAKKYDAARTKFSSATAGSIEQAEAQIEMEITKEMGMAIGVSL 162
BLAST of EWM27238.1 vs. NCBI_GenBank
Match: gi|1072236011|gb|OEU20739.1| (epsilon subunit of F1F0-ATP synthase N-terminal domain-containing protein [Fragilariopsis cylindrus CCMP1102]) HSP 1 Score: 136.346 bits (342), Expect = 1.394e-37 Identity = 66/134 (49.25%), Postives = 95/134 (70.90%), Query Frame = 0
Query: 40 LNFSLPAASIYRNKPVASVVIPGLAGEYGVTKNHSPVIAELKAGVVQIVHETGQAPEKFFVSGGFALTHANSVTDIAVVEAAKLEDIDVEEVPKIYAEAMKDYNAAAEGSKEKVEAQIEVEVAKSLAGALGVAL 173
LNFS+P SIY V V+IPG+ GEYGVT NH P +A++K G++ ++ ++ ++ EK+FV+GG+A+THANSVTD+ VEA K++D+DV V Y A +A GS+E+ EAQI++EV K++ ALGV L
Sbjct: 43 LNFSVPYESIYNGASVEQVIIPGVEGEYGVTANHVPYVAQMKPGILTVMFDSSES-EKYFVAGGYAVTHANSVTDVVCVEAVKVDDLDVSVVSANYEAAKSAAGSATAGSQEEAEAQIDMEVNKTMGAALGVTL 175
BLAST of EWM27238.1 vs. NCBI_GenBank
Match: gi|397569263|gb|EJK46633.1| (hypothetical protein THAOC_34688, partial [Thalassiosira oceanica]) HSP 1 Score: 127.872 bits (320), Expect = 1.180e-33 Identity = 73/155 (47.10%), Postives = 102/155 (65.81%), Query Frame = 0
Query: 20 RILASTAPAAADASSGDNLILNFSLPAASIYRNKPVASVVIPGLAGEYGVTKNHSPVIAELKAGVVQIVHETGQAPEKFFVSGGFALTHANSVTDIAVVEAAKLEDIDVEEVPKIYAEAMKDYNAAAE-GSKEKVEAQIEVEVAKSLAGALGVAL 173
R +S APA+ + LNF+LP +++ + V+SVV+PG GEY VT +H P++AELKAG++ + H G+ EK+FV GGF+LTH S TDI EA K++D+DV V Y EA K A+AE GS + EA IEVEV +++ GALG++L
Sbjct: 75 RRFSSPAPASG------LMKLNFNLPQQTLFDSTEVSSVVVPGAMGEYEVTADHVPIVAELKAGMLTVKHGGGEE-EKYFVPGGFSLTHEGSTTDIVCPEAVKVDDLDVSAVTANY-EAAKSRAASAEAGSADAAEAMIEVEVNRAMGGALGLSL 221
BLAST of EWM27238.1 vs. NCBI_GenBank
Match: gi|698782397|ref|XP_009824242.1| (hypothetical protein H257_02353 [Aphanomyces astaci] >gi|574120292|gb|ETV85770.1| hypothetical protein H257_02353 [Aphanomyces astaci]) HSP 1 Score: 123.25 bits (308), Expect = 1.594e-32 Identity = 72/159 (45.28%), Postives = 98/159 (61.64%), Query Frame = 0
Query: 7 IFQLAARRGVHTT--RILASTAPAAADASSGDNLILNFSLPAASIYRNKPVASVVIPGLAGEYGVTKNHSPVIAELKAGVVQIVHETGQAPEKFFVSGGFALTHANSVTDIAVVEAAKLEDID---VEEVPKIYAEAMKDYNAAAEGSKEKVEAQIEVE 160
+ A RR +HTT R A AP++A A+ + LN S P + Y+ V V +PGL GEYGVT H+P+I++LK GV+ + E + +KFF +GGFA THA+S TDIA VE K+EDID E + Y +A++ AA+G+ EKVEAQI E
Sbjct: 1 MLSRAVRRSIHTTALRAAAENAPSSAVAT---KVTLNLSTPHQAFYKGVQVDLVQVPGLVGEYGVTAGHTPIISQLKPGVIAVHEERDKVVKKFFTAGGFAFTHADSTTDIAAVELIKVEDIDASAAEAGVQKYKQALEQ---AADGTPEKVEAQIAYE 153
BLAST of EWM27238.1 vs. NCBI_GenBank
Match: gi|1173962112|gb|OQS07925.1| (ATP synthase subunit delta' [Thraustotheca clavata]) HSP 1 Score: 122.094 bits (305), Expect = 3.149e-32 Identity = 69/166 (41.57%), Postives = 96/166 (57.83%), Query Frame = 0
Query: 7 IFQLAARRGVHTTRILASTAPAAADASSG---DNLILNFSLPAASIYRNKPVASVVIPGLAGEYGVTKNHSPVIAELKAGVVQIVHETGQAPEKFFVSGGFALTHANSVTDIAVVEAAKLEDIDVEEVPKIYAEAMKDYNAAAEGSKEKVEAQIEVEVAKSLAGAL 169
+ A RR +H+T + AAA+ +SG + LN + P S Y+ V V IPGL GEYG+T H+P+I++LK GV+ + E + +KFF +GGFA THA+SVTDIA VE K+EDID + + + A GS E+VEAQI E ++ AL
Sbjct: 1 MLSRAVRRSIHSTAL-----RAAAEQTSGAAATKVTLNLNTPHQSFYKKTEVDLVQIPGLVGEYGITARHTPIISQLKPGVIIVHEERDKVVKKFFTAGGFAFTHADSVTDIACVELVKVEDIDASAAEAGVTKYKQLMDQATPGSVERVEAQIAYETHVAMVAAL 161
BLAST of EWM27238.1 vs. NCBI_GenBank
Match: gi|813117496|ref|XP_012195659.1| (ATP synthase F1 [Saprolegnia parasitica CBS 223.65] >gi|641539818|gb|KDO33613.1| ATP synthase F1 [Saprolegnia parasitica CBS 223.65]) HSP 1 Score: 122.094 bits (305), Expect = 3.253e-32 Identity = 69/159 (43.40%), Postives = 98/159 (61.64%), Query Frame = 0
Query: 11 AARRGVHTTRILASTAPAAADASSGDNLILNFSLPAASIYRNKPVASVVIPGLAGEYGVTKNHSPVIAELKAGVVQIVHETGQAPEKFFVSGGFALTHANSVTDIAVVEAAKLEDIDVEEVPKIYAEAMKDYNAAAEGSKEKVEAQIEVEVAKSLAGAL 169
AARR +H+T + A+ A+A ++ + LN + P S Y+ V V IPGL GEYG+T H+P+I++LK GV+ + E + +KFF +GGFA THA+SVTDIA VE K+EDID + + + AA+GS E+VEAQI E ++ AL
Sbjct: 5 AARRSIHSTALRAAAENASAAGAT--KVTLNLNTPHQSFYKKAEVDLVQIPGLVGEYGITARHTPIISQLKPGVIVVHEERDKVVKKFFTAGGFAFTHADSVTDIACVELVKVEDIDASAAEAGVTKYKQLMDQAAQGSVERVEAQIAYETHVAMVAAL 161
BLAST of EWM27238.1 vs. NCBI_GenBank
Match: gi|669160842|ref|XP_008615983.1| (hypothetical protein SDRG_11712 [Saprolegnia diclina VS20] >gi|530732415|gb|EQC30657.1| hypothetical protein SDRG_11712 [Saprolegnia diclina VS20]) HSP 1 Score: 122.094 bits (305), Expect = 3.587e-32 Identity = 69/159 (43.40%), Postives = 98/159 (61.64%), Query Frame = 0
Query: 11 AARRGVHTTRILASTAPAAADASSGDNLILNFSLPAASIYRNKPVASVVIPGLAGEYGVTKNHSPVIAELKAGVVQIVHETGQAPEKFFVSGGFALTHANSVTDIAVVEAAKLEDIDVEEVPKIYAEAMKDYNAAAEGSKEKVEAQIEVEVAKSLAGAL 169
AARR +H+T + A+ A+A ++ + LN + P S Y+ V V IPGL GEYG+T H+P+I++LK GV+ + E + +KFF +GGFA THA+SVTDIA VE K+EDID + + + AA+GS E+VEAQI E ++ AL
Sbjct: 5 AARRSIHSTALRAAAENASAAGAT--KVTLNLNTPHQSFYKKAEVDLVQIPGLVGEYGITARHTPIISQLKPGVIIVHEERDKVVKKFFTAGGFAFTHADSVTDIACVELVKVEDIDASAAEAGVTKYKQLMDQAAQGSVERVEAQIAYETHVAMVAAL 161 The following BLAST results are available for this feature:
BLAST of EWM27238.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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