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Properties
| Property Name | Value |
|---|
| Product | r-snare vamp72-family |
| Orig transcript id | gnl|cribi|Naga_100038g27.7721.mrna |
| Orig protein id | gnl|cribi|Naga_100038g27.7721 |
| Gene | SNR6 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002461.1 | supercontig | CM002461.1:399031..401176 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna3430 ID=rna3430|Name=rna3430|organism=Nannochloropsis gaditana|type=mRNA|length=1008bp
ATGAAACTCTATGTGCACTACGAGGAGGCTGGTCAGGATGAAAAGGCATT
GACGCTTAAGTTGACTCTGCCCAAAAGCTGGGCGGAGCAGCCGTTGCTTC
AAGTACTGGAGCTGTTCATCGAATCCTACAACAAGAAAAAGACCGGTCTA
CCTCCCTTGGACAAAGACTTTGTCCACATGGAAAAAGCTGGGGGCGTAAT
CCTTCCAGTCGGCAACATTGTGAGCGACATGTTGAGCGATAGAGATGATT
TGTATATCAGATCCGGGCCAGGGCCTGCTCGTGGGAAGATTGCCCATCTC
AGTTCGCCCCCAAACGCGCACGCTTCGAGTGAGTCGAGCACAGGATTGTT
GCGCTGCAAAAACTATGGATGCAATCAGTCATTTTCGGAAGAAAACAATT
CAGAAGAGGCGTGCCGCTTTCACAAGGCACCCCCCGTCTTTCATGATACG
AAGAAAGGGTGGTCGTGCTGCGCGAAGCGAGTATATGACTGGGACGAGTT
CCATACGATCGAGGGGTGCACCACAGGACGGCACAGTCTCATCGATCCGA
AGGAAATTTTCGCGCCGTCCCCCACCCTGGCTGCAGCCGCGCAGGCCGAG
AGGGGAGATTGCAGCAATACGTCAAGCGCTGCTACAGTCATCAAGAGCAT
TGATGAATTCAATCAGTCGAATCCAAATGCCGCCGCTGCATGCAAAACAG
CAGCCTCGATGACGCAGGCGGGCACGCGCTGCACCGTCAAACCGGACGGG
TCTGCCACCTGTTTGAACAAAGGCTGCCAAAAGGACTACTTGCTCAAGGA
GAATCACCCCTCTGCATGTCGCTACCACGCAGCCGGCCCCGTCTTCCACG
ACGCGGGTAAATACTGGTCATGTTGCCCTGGAACGGTCAAGTACGACTTC
GACGACTTTCTCAAGATCCCTGGATGCATGCTCAGTAGTCATTACGACGG
AAGCCAGGAGAGCCTGGAGGCGTTCACTAGACACGCCAAAACGTCTGAGG
GCACATGA back to topprotein sequence of rna3430 >rna3430-protein ID=rna3430-protein|Name=rna3430|organism=Nannochloropsis gaditana|type=polypeptide|length=236bp
MAERKASGNIHFLGVARFQDRAIVASHAYNTVIDLTGVKEVLKSDQLSVR
PGVHFSFASGGSSWHLMSDVEGRIFILISERTYPVRAAHACLEEFQRSFL
AKTGTKSLEVKEKGLDKSSGEMLRKLCEKYDNLAEVDKLAAVMNKVDAVK
LVLQENVQVALANCVALDNIEKAAEDLQAQAGMFKRNATTLKKQMCWKQL
RMKMVMGLAILAILLVIIIPIAVASKRMHDAHKRNK back to topmRNA from alignment at CM002461.1:399031..401176- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna3430 ID=rna3430|Name=rna3430|organism=Nannochloropsis gaditana|type=mRNA|length=2146bp|location=Sequence derived from alignment at CM002461.1:399031..401176- (Nannochloropsis gaditana)
GCCGACCGTCTCCTCAAGGCCGTTAAGGCCAGCCGTTGCCCGGGACAGTC
GTGTCGGTCTCCACACAGCCGCCGCCGCATACGCGCCGCATCATGCCTTT
CGTGTCCCGGACATGCGGACTTGTGTATTTCATATATTCGATTTTCTACG
ACTCGGTGGTGAGTGTTGCTTACTTGCGTCCGGCATGTGTGGGAACCTAA
AGTAATTCGTTGCTGCTTTCATGGGCCCTCTAGCTTCATGGCTCTAGGTG
CCATCTCTATCCTTCTTCTCTGTATTTCCTCCTCCAGAGGGTATTTCCTT
CTTAATGCTTCTCCTTTGCTCCCATGTTCATTCGCTTGCCTTATTCAACG
TATCTATTCTCCCACTCGTACGTTTTATTCTTTAATGACAAATGTAAGGA
CATTTAAAATGTCCCTCAACGGAATTTCTCACATTCCGAAGTTTTGACAG
AGGACCCTTATTTGACAAGTGTGTTTGTCCTTCGGTACCTTAAGCAAAAA
TGGCGGAGCGTAAAGCCTCAGGCAACATTCAGTAAGTGCGATTCTTCGTG
GCAGAGATGATATGTTTTGTGGGGCTCCTTCTGAGTTGCCTGAGTTTGGC
AAACGATACCCGAGCTTCGTGATGATATTCATCGTTCACAGATGCATGCG
TAAATGCTTCCCTTACATTGAGTACTTCCTCCATGTTAAGTTTTCTAGGT
GTAGCTCGTTTCCAAGACCGTGCAATCGTCGCCAGTCATGCCTACAACAC
AGTCATTGACCTGACAGGCGTCAAGGAGGTGCTTAAGAGTGACCAGCTTA
GTGTCCGACCGGGTGTGCATTTCTCCTTTGCCTCGGGTGGCTCCTCATGG
CACCTCATGTCCGATGTGGAGGGAAGAATTTTTATTCTTATATCCGAGCG
CACGTATCCCGTACGGGCCGCCCATGCCTGTTTAGAGGAATTCCAGAGAT
CGGTGAGCATGAGTGGTGGTGGGTATGTGTGTTTGGATCGCAGCAAGCCC
GTCATCGCGTCCGACCACCTGAGACGTAATATTTATAGTGGCCTTTCCTG
TTCGTGTCGTCGCGCACGTGACCTTTCTCGTTTGACTTCTACCCTGTGCA
CTCACACAGTTTTTGGCCAAGACGGGGACGAAGAGTCTAGAAGTGAAAGA
AAAAGGTCTGGATAAGAGCTCTGGGGAGATGCTGCGAAAATTGTGCGAGA
AATACGACAACCTCGCTGAAGTGGATAAACTGGCAGCGGTCATGAATAAG
GTGGACGCGGTCAAGCTCGTCCTGCAGGAAAACGTCCAGGTGGCCCTGGC
GAATTGTGTTGCCTTGGACAACATCGAGAAGGCGGCTGGTAAGGACAGTC
GGCACGAGGGCTCAGGGATAGAATTTGCCAGGACTCTTTCGCTTTTTTAA
AAAAGGAAAAGCTCACTTCTCCGGTCCCCCGGTGACTCGTACACATGACC
GTCACACGCACAGAGGATCTGCAGGCTCAAGCCGGCATGTTCAAGAGAAA
CGCCACTACTCTGAAGAAACAGATGTGCTGGAAACAGCTCCGAGTACGTG
CTTGGTTGTCTTACCCCTATCCTGCTCCTATGCCGGGGGTGTTTCTGGCT
GTGCCATGTGTGTAAACCTCGGACGATTGGAAGTCGCAGGAGGCGGCGTG
GGCCGTCATCCCTTTTCATTGCGATCTTCTCGCCCTTACCCCCTCTCTCT
TCCTTTGCTCGATACGATCTAGATGAAAATGGTTATGGGACTGGCAATCC
TGGCGATCCTGCTTGTGATTATCATTCCCATTGCCGTTGCCAGCAAGCGG
ATGCACGATGCTCACAAGAGAAATAAGTAAAGTGCATTCAAGTTCGAATG
GAAGAGAAGGGGAACGCTGGAAGGAAACGGGTAGGATTACCCGTCATGGG
GGGGAAATGTCCAGGCAACGGTGTGAATCGTGGCGTTGATTATCCATGCG
CGTGAGAAGGAAGAGGCGGATGGTGGTTGTAAGATATTTATAGGATCCTG
GAAGTAAGTGTGCGAGGTTGTTGGCAATGATGTTTTCGAACGAAGACCGT
GGGGCACTGTCCGTCTCGAGTTTGCATCGCTGTTCGTCCGCCGGCTACGA
ACGGAAGACGCCAAAAAATAAAAAATACCGTATTGAGCAGAATTTT back to topCoding sequence (CDS) from alignment at CM002461.1:399031..401176- >rna3430 ID=rna3430|Name=rna3430|organism=Nannochloropsis gaditana|type=CDS|length=3555bp|location=Sequence derived from alignment at CM002461.1:399031..401176- (Nannochloropsis gaditana)
ATGAAAATGGTTATGGGACTGGCAATCCTGGCGATCCTGCTTGTGATTAT
CATTCCCATTGCCGTTGCCAGCAAGCGGATGCACGATGCTCACAAGAGAA
ATAAGTAAAGGATCTGCAGGCTCAAGCCGGCATGTTCAAGAGAAACGCCA
CTACTCTGAAGAAACAGATGTGCTGGAAACAGCTCCGATTTTTGGCCAAG
ACGGGGACGAAGAGTCTAGAAGTGAAAGAAAAAGGTCTGGATAAGAGCTC
TGGGGAGATGCTGCGAAAATTGTGCGAGAAATACGACAACCTCGCTGAAG
TGGATAAACTGGCAGCGGTCATGAATAAGGTGGACGCGGTCAAGCTCGTC
CTGCAGGAAAACGTCCAGGTGGCCCTGGCGAATTGTGTTGCCTTGGACAA
CATCGAGAAGGCGGCTGTTTTCTAGGTGTAGCTCGTTTCCAAGACCGTGC
AATCGTCGCCAGTCATGCCTACAACACAGTCATTGACCTGACAGGCGTCA
AGGAGGTGCTTAAGAGTGACCAGCTTAGTGTCCGACCGGGTGTGCATTTC
TCCTTTGCCTCGGGTGGCTCCTCATGGCACCTCATGTCCGATGTGGAGGG
AAGAATTTTTATTCTTATATCCGAGCGCACGTATCCCGTACGGGCCGCCC
ATGCCTGTTTAGAGGAATTCCAGAGATCGATGGCGGAGCGTAAAGCCTCA
GGCAACATTCAATGAAAATGGTTATGGGACTGGCAATCCTGGCGATCCTG
CTTGTGATTATCATTCCCATTGCCGTTGCCAGCAAGCGGATGCACGATGC
TCACAAGAGAAATAAGTAAAGGATCTGCAGGCTCAAGCCGGCATGTTCAA
GAGAAACGCCACTACTCTGAAGAAACAGATGTGCTGGAAACAGCTCCGAT
TTTTGGCCAAGACGGGGACGAAGAGTCTAGAAGTGAAAGAAAAAGGTCTG
GATAAGAGCTCTGGGGAGATGCTGCGAAAATTGTGCGAGAAATACGACAA
CCTCGCTGAAGTGGATAAACTGGCAGCGGTCATGAATAAGGTGGACGCGG
TCAAGCTCGTCCTGCAGGAAAACGTCCAGGTGGCCCTGGCGAATTGTGTT
GCCTTGGACAACATCGAGAAGGCGGCTGTTTTCTAGGTGTAGCTCGTTTC
CAAGACCGTGCAATCGTCGCCAGTCATGCCTACAACACAGTCATTGACCT
GACAGGCGTCAAGGAGGTGCTTAAGAGTGACCAGCTTAGTGTCCGACCGG
GTGTGCATTTCTCCTTTGCCTCGGGTGGCTCCTCATGGCACCTCATGTCC
GATGTGGAGGGAAGAATTTTTATTCTTATATCCGAGCGCACGTATCCCGT
ACGGGCCGCCCATGCCTGTTTAGAGGAATTCCAGAGATCGATGGCGGAGC
GTAAAGCCTCAGGCAACATTCAATGAAAATGGTTATGGGACTGGCAATCC
TGGCGATCCTGCTTGTGATTATCATTCCCATTGCCGTTGCCAGCAAGCGG
ATGCACGATGCTCACAAGAGAAATAAGTAAAGGATCTGCAGGCTCAAGCC
GGCATGTTCAAGAGAAACGCCACTACTCTGAAGAAACAGATGTGCTGGAA
ACAGCTCCGATTTTTGGCCAAGACGGGGACGAAGAGTCTAGAAGTGAAAG
AAAAAGGTCTGGATAAGAGCTCTGGGGAGATGCTGCGAAAATTGTGCGAG
AAATACGACAACCTCGCTGAAGTGGATAAACTGGCAGCGGTCATGAATAA
GGTGGACGCGGTCAAGCTCGTCCTGCAGGAAAACGTCCAGGTGGCCCTGG
CGAATTGTGTTGCCTTGGACAACATCGAGAAGGCGGCTGTTTTCTAGGTG
TAGCTCGTTTCCAAGACCGTGCAATCGTCGCCAGTCATGCCTACAACACA
GTCATTGACCTGACAGGCGTCAAGGAGGTGCTTAAGAGTGACCAGCTTAG
TGTCCGACCGGGTGTGCATTTCTCCTTTGCCTCGGGTGGCTCCTCATGGC
ACCTCATGTCCGATGTGGAGGGAAGAATTTTTATTCTTATATCCGAGCGC
ACGTATCCCGTACGGGCCGCCCATGCCTGTTTAGAGGAATTCCAGAGATC
GATGGCGGAGCGTAAAGCCTCAGGCAACATTCAATGAAAATGGTTATGGG
ACTGGCAATCCTGGCGATCCTGCTTGTGATTATCATTCCCATTGCCGTTG
CCAGCAAGCGGATGCACGATGCTCACAAGAGAAATAAGTAAAGGATCTGC
AGGCTCAAGCCGGCATGTTCAAGAGAAACGCCACTACTCTGAAGAAACAG
ATGTGCTGGAAACAGCTCCGATTTTTGGCCAAGACGGGGACGAAGAGTCT
AGAAGTGAAAGAAAAAGGTCTGGATAAGAGCTCTGGGGAGATGCTGCGAA
AATTGTGCGAGAAATACGACAACCTCGCTGAAGTGGATAAACTGGCAGCG
GTCATGAATAAGGTGGACGCGGTCAAGCTCGTCCTGCAGGAAAACGTCCA
GGTGGCCCTGGCGAATTGTGTTGCCTTGGACAACATCGAGAAGGCGGCTG
TTTTCTAGGTGTAGCTCGTTTCCAAGACCGTGCAATCGTCGCCAGTCATG
CCTACAACACAGTCATTGACCTGACAGGCGTCAAGGAGGTGCTTAAGAGT
GACCAGCTTAGTGTCCGACCGGGTGTGCATTTCTCCTTTGCCTCGGGTGG
CTCCTCATGGCACCTCATGTCCGATGTGGAGGGAAGAATTTTTATTCTTA
TATCCGAGCGCACGTATCCCGTACGGGCCGCCCATGCCTGTTTAGAGGAA
TTCCAGAGATCGATGGCGGAGCGTAAAGCCTCAGGCAACATTCAATGAAA
ATGGTTATGGGACTGGCAATCCTGGCGATCCTGCTTGTGATTATCATTCC
CATTGCCGTTGCCAGCAAGCGGATGCACGATGCTCACAAGAGAAATAAGT
AAAGGATCTGCAGGCTCAAGCCGGCATGTTCAAGAGAAACGCCACTACTC
TGAAGAAACAGATGTGCTGGAAACAGCTCCGATTTTTGGCCAAGACGGGG
ACGAAGAGTCTAGAAGTGAAAGAAAAAGGTCTGGATAAGAGCTCTGGGGA
GATGCTGCGAAAATTGTGCGAGAAATACGACAACCTCGCTGAAGTGGATA
AACTGGCAGCGGTCATGAATAAGGTGGACGCGGTCAAGCTCGTCCTGCAG
GAAAACGTCCAGGTGGCCCTGGCGAATTGTGTTGCCTTGGACAACATCGA
GAAGGCGGCTGTTTTCTAGGTGTAGCTCGTTTCCAAGACCGTGCAATCGT
CGCCAGTCATGCCTACAACACAGTCATTGACCTGACAGGCGTCAAGGAGG
TGCTTAAGAGTGACCAGCTTAGTGTCCGACCGGGTGTGCATTTCTCCTTT
GCCTCGGGTGGCTCCTCATGGCACCTCATGTCCGATGTGGAGGGAAGAAT
TTTTATTCTTATATCCGAGCGCACGTATCCCGTACGGGCCGCCCATGCCT
GTTTAGAGGAATTCCAGAGATCGATGGCGGAGCGTAAAGCCTCAGGCAAC
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