EWM27266.1, cds3421 (CDS) Nannochloropsis gaditana

Overview
NameEWM27266.1
Unique Namecds3421
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002461.1:400646..400677 -
Alignment locationCM002461.1:400225..400486 -
Alignment locationCM002461.1:399839..400067 -
Alignment locationCM002461.1:399634..399713 -
Alignment locationCM002461.1:399347..399454 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM27266.1
Productr-snare vamp72-family
Orig transcript idgnl|cribi|Naga_100038g27.7721.mrna
GeneSNR6
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002461.1supercontigCM002461.1:400646..400677 -
CM002461.1supercontigCM002461.1:400225..400486 -
CM002461.1supercontigCM002461.1:399839..400067 -
CM002461.1supercontigCM002461.1:399634..399713 -
CM002461.1supercontigCM002461.1:399347..399454 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0009987cellular process
GO:0006810transport
GO:0016192vesicle-mediated transport
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO:0016021integral component of membrane
Vocabulary: INTERPRO
TermDefinition
IPR011012Longin-like_dom
IPR010908Longin_dom
IPR001388Synaptobrevin
Homology
BLAST of EWM27266.1 vs. NCBI_GenBank
Match: gi|585109447|gb|EWM27266.1| (r-snare vamp72-family [Nannochloropsis gaditana])

HSP 1 Score: 485.337 bits (1248), Expect = 2.057e-173
Identity = 236/236 (100.00%), Postives = 236/236 (100.00%), Query Frame = 0
Query:    1 MAERKASGNIHFLGVARFQDRAIVASHAYNTVIDLTGVKEVLKSDQLSVRPGVHFSFASGGSSWHLMSDVEGRIFILISERTYPVRAAHACLEEFQRSFLAKTGTKSLEVKEKGLDKSSGEMLRKLCEKYDNLAEVDKLAAVMNKVDAVKLVLQENVQVALANCVALDNIEKAAEDLQAQAGMFKRNATTLKKQMCWKQLRMKMVMGLAILAILLVIIIPIAVASKRMHDAHKRNK 236
            MAERKASGNIHFLGVARFQDRAIVASHAYNTVIDLTGVKEVLKSDQLSVRPGVHFSFASGGSSWHLMSDVEGRIFILISERTYPVRAAHACLEEFQRSFLAKTGTKSLEVKEKGLDKSSGEMLRKLCEKYDNLAEVDKLAAVMNKVDAVKLVLQENVQVALANCVALDNIEKAAEDLQAQAGMFKRNATTLKKQMCWKQLRMKMVMGLAILAILLVIIIPIAVASKRMHDAHKRNK
Sbjct:    1 MAERKASGNIHFLGVARFQDRAIVASHAYNTVIDLTGVKEVLKSDQLSVRPGVHFSFASGGSSWHLMSDVEGRIFILISERTYPVRAAHACLEEFQRSFLAKTGTKSLEVKEKGLDKSSGEMLRKLCEKYDNLAEVDKLAAVMNKVDAVKLVLQENVQVALANCVALDNIEKAAEDLQAQAGMFKRNATTLKKQMCWKQLRMKMVMGLAILAILLVIIIPIAVASKRMHDAHKRNK 236          
BLAST of EWM27266.1 vs. NCBI_GenBank
Match: gi|299473043|emb|CBN77436.1| (Soluble NSF Attachment Protein (SNAP) Receptor (SNARE), Vesicle-associated membrane protein [Ectocarpus siliculosus])

HSP 1 Score: 130.568 bits (327), Expect = 6.505e-34
Identity = 77/196 (39.29%), Postives = 114/196 (58.16%), Query Frame = 0
Query:    7 SGNIHFLGVARFQDRAIVASHAYNTVIDLTGVKEVLKSDQLSVRPGVHFSFASGGSSWHLMSDVEGRIFILISERTYPVRAAHACLEEFQRSFLAKTGTKSLEVKEKGLDKSSGEMLRKLCEKYDNLAEVDKLAAVMNKVDAVKLVLQENVQVALANCVALDNIEKAAEDLQAQAGMFKRNATTLKKQMCWKQLRM 202
            S  I FLGV RF DR +VA ++ +   D   +KE++ +    V P   +S      S H ++D   RI+  ++++ YP R A   LEE Q  FL K G KSL  KE GL ++       LC KYD++  VD++AAV +KVD VK+ +Q+N+Q  LAN   LD I + AE+L  QA +F+  ++ L++QM  K ++M
Sbjct:    2 SRRITFLGVIRFTDRVLVAGYSPSEADDSLIIKELMSNPDTFVEPRKRYSVEGRMFSIHFVADDSNRIYSCVTDKEYPARIAFTLLEEAQTKFLTKVGDKSLTAKEGGLSRTMKSSFSDLCIKYDDIRNVDRMAAVQDKVDVVKVTMQDNIQQMLANEERLDQISENAENLNEQAKVFQNRSSALRRQMRCKAIKM 197          
BLAST of EWM27266.1 vs. NCBI_GenBank
Match: gi|325183073|emb|CCA17529.1| (conserved hypothetical protein [Albugo laibachii Nc14])

HSP 1 Score: 131.339 bits (329), Expect = 1.526e-33
Identity = 72/224 (32.14%), Postives = 127/224 (56.70%), Query Frame = 0
Query:    9 NIHFLGVARFQDRAIVASHAYN----TVIDLTGVKE-------VLKSD--QLSVRPGVHFSFASGGSSWHLMSDVEGRIFILISERTYPVRAAHACLEEFQRSFLAKTGTKSLEVKEKGLDKSSGEMLRKLCEKYDNLAEVDKLAAVMNKVDAVKLVLQENVQVALANCVALDNIEKAAEDLQAQAGMFKRNATTLKKQMCWKQLRMKMVMGLAILAILLVIII 219
            NI F+GVAR  D+AI+  + ++    T +DL    +       VL++   +  V P    S     + +H     +  +F +I+ ++YP+R A   ++  Q+ F+ K  TK+L  +E GLDK    M++ L  +YD+  +VDK++ V+++VD VK V+  N+QV L+N   ++ +E+   DL  QA +F+ +   L+K M WK +++ + +GL   AIL+++II
Sbjct:   42 NIKFIGVARATDKAIICCYFHSAKASTNVDLAECAKWKEMYAKVLRAPTWKTQVTPNARHSLDCDPNKFHFSMSNDELVFAVITVKSYPIRLAFQLIQTLQQEFVPKFATKALNCREHGLDKECKSMMQTLANQYDDRTKVDKISEVLHQVDNVKSVMHTNIQVVLSNTEKMEVVEQKTNDLSEQAKVFRNSGRKLRKAMWWKNVKLTIAIGLC--AILVIVII 263          
BLAST of EWM27266.1 vs. NCBI_GenBank
Match: gi|635364145|emb|CCI47369.1| (unnamed protein product [Albugo candida])

HSP 1 Score: 129.413 bits (324), Expect = 8.565e-31
Identity = 75/236 (31.78%), Postives = 134/236 (56.78%), Query Frame = 0
Query:    9 NIHFLGVARFQDRAIVASHAYNTV----IDL---TGVKE----VLKSD--QLSVRPGVHFSFASGGSSWHLMSDVEGRIFILISERTYPVRAAHACLEEFQRSFLAKTGTKSLEVKEKGLDKSSGEMLRKLCEKYDNLAEVDKLAAVMNKVDAVKLVLQENVQVALANCVALDNIEKAAEDLQAQAGMFKRNATTLKKQMCWKQLRMKMVMGL-AILAILLVIIIP--IAVASKRM 228
            NI F+G+AR  D+AI+  + ++      +DL   T  KE    VL++   +  V P    S     + +H     +  +F +I+ ++YP+R A   ++  Q+ F+ K  TK+L  +E GLDK    M++ L  +YD+  +VDK++ V+++VD VK V+  N+QV L+N   ++ +E+   DL  QA +F+ +   L+K M WK +++ + +GL AIL I++++ +      +SK+M
Sbjct:  432 NIKFIGIARATDKAIICCYFHSNKSSMNVDLAECTKWKEMYAKVLRAPTWKTQVTPNARHSLDCDPNKFHFSMSNDELVFAVITVKSYPIRLAFQLIQTLQQEFVPKFATKALSCREHGLDKECKSMVQALATQYDDRTKVDKISEVLHQVDNVKSVMHTNIQVVLSNTEKMEVVEQKTNDLSEQAKVFRNSGRKLRKAMWWKNVKLTIAIGLCAILVIVIILAVSGVFKTSSKKM 667          
BLAST of EWM27266.1 vs. NCBI_GenBank
Match: gi|635364143|emb|CCI47367.1| (unnamed protein product [Albugo candida])

HSP 1 Score: 129.413 bits (324), Expect = 9.919e-31
Identity = 73/224 (32.59%), Postives = 128/224 (57.14%), Query Frame = 0
Query:    9 NIHFLGVARFQDRAIVASHAYNTV----IDL---TGVKE----VLKSD--QLSVRPGVHFSFASGGSSWHLMSDVEGRIFILISERTYPVRAAHACLEEFQRSFLAKTGTKSLEVKEKGLDKSSGEMLRKLCEKYDNLAEVDKLAAVMNKVDAVKLVLQENVQVALANCVALDNIEKAAEDLQAQAGMFKRNATTLKKQMCWKQLRMKMVMGLAILAILLVIII 219
            NI F+G+AR  D+AI+  + ++      +DL   T  KE    VL++   +  V P    S     + +H     +  +F +I+ ++YP+R A   ++  Q+ F+ K  TK+L  +E GLDK    M++ L  +YD+  +VDK++ V+++VD VK V+  N+QV L+N   ++ +E+   DL  QA +F+ +   L+K M WK +++ + +GL   AIL+++II
Sbjct:  466 NIKFIGIARATDKAIICCYFHSNKSSMNVDLAECTKWKEMYAKVLRAPTWKTQVTPNARHSLDCDPNKFHFSMSNDELVFAVITVKSYPIRLAFQLIQTLQQEFVPKFATKALSCREHGLDKECKSMVQALATQYDDRTKVDKISEVLHQVDNVKSVMHTNIQVVLSNTEKMEVVEQKTNDLSEQAKVFRNSGRKLRKAMWWKNVKLTIAIGLC--AILVIVII 687          
BLAST of EWM27266.1 vs. NCBI_GenBank
Match: gi|635364144|emb|CCI47368.1| (unnamed protein product [Albugo candida])

HSP 1 Score: 129.413 bits (324), Expect = 1.063e-30
Identity = 73/224 (32.59%), Postives = 128/224 (57.14%), Query Frame = 0
Query:    9 NIHFLGVARFQDRAIVASHAYNTV----IDL---TGVKE----VLKSD--QLSVRPGVHFSFASGGSSWHLMSDVEGRIFILISERTYPVRAAHACLEEFQRSFLAKTGTKSLEVKEKGLDKSSGEMLRKLCEKYDNLAEVDKLAAVMNKVDAVKLVLQENVQVALANCVALDNIEKAAEDLQAQAGMFKRNATTLKKQMCWKQLRMKMVMGLAILAILLVIII 219
            NI F+G+AR  D+AI+  + ++      +DL   T  KE    VL++   +  V P    S     + +H     +  +F +I+ ++YP+R A   ++  Q+ F+ K  TK+L  +E GLDK    M++ L  +YD+  +VDK++ V+++VD VK V+  N+QV L+N   ++ +E+   DL  QA +F+ +   L+K M WK +++ + +GL   AIL+++II
Sbjct:  462 NIKFIGIARATDKAIICCYFHSNKSSMNVDLAECTKWKEMYAKVLRAPTWKTQVTPNARHSLDCDPNKFHFSMSNDELVFAVITVKSYPIRLAFQLIQTLQQEFVPKFATKALSCREHGLDKECKSMVQALATQYDDRTKVDKISEVLHQVDNVKSVMHTNIQVVLSNTEKMEVVEQKTNDLSEQAKVFRNSGRKLRKAMWWKNVKLTIAIGLC--AILVIVII 683          
BLAST of EWM27266.1 vs. NCBI_GenBank
Match: gi|635364142|emb|CCI47366.1| (unnamed protein product [Albugo candida])

HSP 1 Score: 129.413 bits (324), Expect = 1.273e-30
Identity = 73/224 (32.59%), Postives = 128/224 (57.14%), Query Frame = 0
Query:    9 NIHFLGVARFQDRAIVASHAYNTV----IDL---TGVKE----VLKSD--QLSVRPGVHFSFASGGSSWHLMSDVEGRIFILISERTYPVRAAHACLEEFQRSFLAKTGTKSLEVKEKGLDKSSGEMLRKLCEKYDNLAEVDKLAAVMNKVDAVKLVLQENVQVALANCVALDNIEKAAEDLQAQAGMFKRNATTLKKQMCWKQLRMKMVMGLAILAILLVIII 219
            NI F+G+AR  D+AI+  + ++      +DL   T  KE    VL++   +  V P    S     + +H     +  +F +I+ ++YP+R A   ++  Q+ F+ K  TK+L  +E GLDK    M++ L  +YD+  +VDK++ V+++VD VK V+  N+QV L+N   ++ +E+   DL  QA +F+ +   L+K M WK +++ + +GL   AIL+++II
Sbjct:  535 NIKFIGIARATDKAIICCYFHSNKSSMNVDLAECTKWKEMYAKVLRAPTWKTQVTPNARHSLDCDPNKFHFSMSNDELVFAVITVKSYPIRLAFQLIQTLQQEFVPKFATKALSCREHGLDKECKSMVQALATQYDDRTKVDKISEVLHQVDNVKSVMHTNIQVVLSNTEKMEVVEQKTNDLSEQAKVFRNSGRKLRKAMWWKNVKLTIAIGLC--AILVIVII 756          
BLAST of EWM27266.1 vs. NCBI_GenBank
Match: gi|953499896|emb|CEG38537.1| (vesicle-associated membrane protein 7b [Plasmopara halstedii])

HSP 1 Score: 122.865 bits (307), Expect = 1.572e-30
Identity = 66/231 (28.57%), Postives = 120/231 (51.95%), Query Frame = 0
Query:    9 NIHFLGVARFQDRAIVASHAY-------NTVIDLTGVKEVL------KSDQLSVRPGVHFSFASGGSSWHLMSDVEGRIFILISERTYPVRAAHACLEEFQRSFLAKTGTKSLEVKEKGLDKSSGEMLRKLCEKYDNLAEVDKLAAVMNKVDAVKLVLQENVQVALANCVALDNIEKAAEDLQAQAGMFKRNATTLKKQMCWKQLRMKMVMGLAILAILLVIIIPIAVASK 226
            NI FL +AR  D+ IVA + +       N   D+   +E+L       + +  V P    S     + +H   + +  +F  I+ + YP+R A   +   Q   + K G+K+L  +E GLDK   ++   +   YD+  +VDKL+ VM++VD VK V+  N+QV L+N   ++ +E+   DL  QA +F+     L++QM WK +++ +++ +  + +L +++  + V  K
Sbjct:   14 NIKFLAIARATDKVIVACYMHTAGKPVRNGEGDMNVFREMLSKVIRAPTWKTQVTPNGRHSLDCDPNKFHFTMNNDELVFAAITSKDYPIRLAFQMISAIQTEIIPKFGSKALTCRENGLDKDCAKIFTAIAAGYDDRTKVDKLSDVMHQVDGVKTVMHNNIQVVLSNTEKMEVVEQKTNDLNEQAKVFRNTGRKLRRQMWWKNVKLTILLSVCAILVLFILLAVLGVFKK 244          
BLAST of EWM27266.1 vs. NCBI_GenBank
Match: gi|675188869|ref|XP_008903319.1| (hypothetical protein PPTG_10394 [Phytophthora parasitica INRA-310] >gi|567993853|gb|ETL44021.1| hypothetical protein L916_05611 [Phytophthora parasitica] >gi|568096781|gb|ETN11528.1| hypothetical protein PPTG_10394 [Phytophthora parasitica INRA-310] >gi|970660753|gb|KUF98278.1| hypothetical protein AM588_10010877 [Phytophthora nicotianae])

HSP 1 Score: 120.168 bits (300), Expect = 1.549e-29
Identity = 63/214 (29.44%), Postives = 113/214 (52.80%), Query Frame = 0
Query:    9 NIHFLGVARFQDRAIVASHAYNT--------VIDLTGVKEVL------KSDQLSVRPGVHFSFASGGSSWHLMSDVEGRIFILISERTYPVRAAHACLEEFQRSFLAKTGTKSLEVKEKGLDKSSGEMLRKLCEKYDNLAEVDKLAAVMNKVDAVKLVLQENVQVALANCVALDNIEKAAEDLQAQAGMFKRNATTLKKQMCWKQLRMKMVMGL 208
            NI FL +AR  D+ IVAS+ + +         +++   +E+L       + +  V P    S     + +H   + +  +F  I+ + YP+R A   +   Q   + K G+K+L  +E GLDK   +    +   YD+  +VDKL+ VM++VD VK V+  N+QV L+N   ++ +E+   DL  QA +F+     L++QM WK +++ +++G+
Sbjct:   15 NIKFLAIARATDKVIVASYMHQSGGKPARGGEVEVNTFREMLSKVIRAPTWKTQVTPNGRHSLECDPNKFHFTMNNDELVFAAITAKDYPIRLAFQMISAVQTEIVPKYGSKALTCRENGLDKDCAKAFAAIASGYDDRTKVDKLSEVMHQVDGVKTVMHNNIQVVLSNTEKMEVVEQKTNDLNEQAKVFRNTGRKLRRQMWWKNVKLTILLGI 228          
BLAST of EWM27266.1 vs. NCBI_GenBank
Match: gi|970651532|gb|KUF90339.1| (Vesicle-associated membrane protein 7B [Phytophthora nicotianae])

HSP 1 Score: 119.013 bits (297), Expect = 4.928e-29
Identity = 63/214 (29.44%), Postives = 112/214 (52.34%), Query Frame = 0
Query:    9 NIHFLGVARFQDRAIVASHAYNT--------VIDLTGVKEVL------KSDQLSVRPGVHFSFASGGSSWHLMSDVEGRIFILISERTYPVRAAHACLEEFQRSFLAKTGTKSLEVKEKGLDKSSGEMLRKLCEKYDNLAEVDKLAAVMNKVDAVKLVLQENVQVALANCVALDNIEKAAEDLQAQAGMFKRNATTLKKQMCWKQLRMKMVMGL 208
            NI FL +AR  D+ IVAS+ + +         +++   +E+L       + +  V P    S     + +H   + +  +F  I+ + YP+R A   +   Q   + K G+K+L  +E GLDK   +    +   YD+  +VDKL+ VM++VD VK V+  N+QV L+N   ++ +E+   DL  QA +F+     L++QM WK + + +++G+
Sbjct:   15 NIKFLAIARATDKVIVASYMHQSGGKPARGGEVEVNTFREMLSKVIRAPTWKTQVTPNGRHSLECDPNKFHFTMNNDELVFAAITAKDYPIRLAFQMISAVQTEIVPKYGSKALTCRENGLDKDCAKAFAAIASGYDDRTKVDKLSEVMHQVDGVKTVMHNNIQVVLSNTEKMEVVEQKTNDLNEQAKVFRNTGRKLRRQMWWKNVXLTILLGI 228          
The following BLAST results are available for this feature:
BLAST of EWM27266.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585109447|gb|EWM27266.1|2.057e-173100.00r-snare vamp72-family [Nannochloropsis gaditana][more]
gi|299473043|emb|CBN77436.1|6.505e-3439.29Soluble NSF Attachment Protein (SNAP) Receptor (SN... [more]
gi|325183073|emb|CCA17529.1|1.526e-3332.14conserved hypothetical protein [Albugo laibachii N... [more]
gi|635364145|emb|CCI47369.1|8.565e-3131.78unnamed protein product [Albugo candida][more]
gi|635364143|emb|CCI47367.1|9.919e-3132.59unnamed protein product [Albugo candida][more]
gi|635364144|emb|CCI47368.1|1.063e-3032.59unnamed protein product [Albugo candida][more]
gi|635364142|emb|CCI47366.1|1.273e-3032.59unnamed protein product [Albugo candida][more]
gi|953499896|emb|CEG38537.1|1.572e-3028.57vesicle-associated membrane protein 7b [Plasmopara... [more]
gi|675188869|ref|XP_008903319.1|1.549e-2929.44hypothetical protein PPTG_10394 [Phytophthora para... [more]
gi|970651532|gb|KUF90339.1|4.928e-2929.44Vesicle-associated membrane protein 7B [Phytophtho... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna3430rna3430Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications