EWM27266.1, cds3421 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM27266.1 vs. NCBI_GenBank
Match: gi|585109447|gb|EWM27266.1| (r-snare vamp72-family [Nannochloropsis gaditana]) HSP 1 Score: 485.337 bits (1248), Expect = 2.057e-173 Identity = 236/236 (100.00%), Postives = 236/236 (100.00%), Query Frame = 0
Query: 1 MAERKASGNIHFLGVARFQDRAIVASHAYNTVIDLTGVKEVLKSDQLSVRPGVHFSFASGGSSWHLMSDVEGRIFILISERTYPVRAAHACLEEFQRSFLAKTGTKSLEVKEKGLDKSSGEMLRKLCEKYDNLAEVDKLAAVMNKVDAVKLVLQENVQVALANCVALDNIEKAAEDLQAQAGMFKRNATTLKKQMCWKQLRMKMVMGLAILAILLVIIIPIAVASKRMHDAHKRNK 236
MAERKASGNIHFLGVARFQDRAIVASHAYNTVIDLTGVKEVLKSDQLSVRPGVHFSFASGGSSWHLMSDVEGRIFILISERTYPVRAAHACLEEFQRSFLAKTGTKSLEVKEKGLDKSSGEMLRKLCEKYDNLAEVDKLAAVMNKVDAVKLVLQENVQVALANCVALDNIEKAAEDLQAQAGMFKRNATTLKKQMCWKQLRMKMVMGLAILAILLVIIIPIAVASKRMHDAHKRNK
Sbjct: 1 MAERKASGNIHFLGVARFQDRAIVASHAYNTVIDLTGVKEVLKSDQLSVRPGVHFSFASGGSSWHLMSDVEGRIFILISERTYPVRAAHACLEEFQRSFLAKTGTKSLEVKEKGLDKSSGEMLRKLCEKYDNLAEVDKLAAVMNKVDAVKLVLQENVQVALANCVALDNIEKAAEDLQAQAGMFKRNATTLKKQMCWKQLRMKMVMGLAILAILLVIIIPIAVASKRMHDAHKRNK 236
BLAST of EWM27266.1 vs. NCBI_GenBank
Match: gi|299473043|emb|CBN77436.1| (Soluble NSF Attachment Protein (SNAP) Receptor (SNARE), Vesicle-associated membrane protein [Ectocarpus siliculosus]) HSP 1 Score: 130.568 bits (327), Expect = 6.505e-34 Identity = 77/196 (39.29%), Postives = 114/196 (58.16%), Query Frame = 0
Query: 7 SGNIHFLGVARFQDRAIVASHAYNTVIDLTGVKEVLKSDQLSVRPGVHFSFASGGSSWHLMSDVEGRIFILISERTYPVRAAHACLEEFQRSFLAKTGTKSLEVKEKGLDKSSGEMLRKLCEKYDNLAEVDKLAAVMNKVDAVKLVLQENVQVALANCVALDNIEKAAEDLQAQAGMFKRNATTLKKQMCWKQLRM 202
S I FLGV RF DR +VA ++ + D +KE++ + V P +S S H ++D RI+ ++++ YP R A LEE Q FL K G KSL KE GL ++ LC KYD++ VD++AAV +KVD VK+ +Q+N+Q LAN LD I + AE+L QA +F+ ++ L++QM K ++M
Sbjct: 2 SRRITFLGVIRFTDRVLVAGYSPSEADDSLIIKELMSNPDTFVEPRKRYSVEGRMFSIHFVADDSNRIYSCVTDKEYPARIAFTLLEEAQTKFLTKVGDKSLTAKEGGLSRTMKSSFSDLCIKYDDIRNVDRMAAVQDKVDVVKVTMQDNIQQMLANEERLDQISENAENLNEQAKVFQNRSSALRRQMRCKAIKM 197
BLAST of EWM27266.1 vs. NCBI_GenBank
Match: gi|325183073|emb|CCA17529.1| (conserved hypothetical protein [Albugo laibachii Nc14]) HSP 1 Score: 131.339 bits (329), Expect = 1.526e-33 Identity = 72/224 (32.14%), Postives = 127/224 (56.70%), Query Frame = 0
Query: 9 NIHFLGVARFQDRAIVASHAYN----TVIDLTGVKE-------VLKSD--QLSVRPGVHFSFASGGSSWHLMSDVEGRIFILISERTYPVRAAHACLEEFQRSFLAKTGTKSLEVKEKGLDKSSGEMLRKLCEKYDNLAEVDKLAAVMNKVDAVKLVLQENVQVALANCVALDNIEKAAEDLQAQAGMFKRNATTLKKQMCWKQLRMKMVMGLAILAILLVIII 219
NI F+GVAR D+AI+ + ++ T +DL + VL++ + V P S + +H + +F +I+ ++YP+R A ++ Q+ F+ K TK+L +E GLDK M++ L +YD+ +VDK++ V+++VD VK V+ N+QV L+N ++ +E+ DL QA +F+ + L+K M WK +++ + +GL AIL+++II
Sbjct: 42 NIKFIGVARATDKAIICCYFHSAKASTNVDLAECAKWKEMYAKVLRAPTWKTQVTPNARHSLDCDPNKFHFSMSNDELVFAVITVKSYPIRLAFQLIQTLQQEFVPKFATKALNCREHGLDKECKSMMQTLANQYDDRTKVDKISEVLHQVDNVKSVMHTNIQVVLSNTEKMEVVEQKTNDLSEQAKVFRNSGRKLRKAMWWKNVKLTIAIGLC--AILVIVII 263
BLAST of EWM27266.1 vs. NCBI_GenBank
Match: gi|635364145|emb|CCI47369.1| (unnamed protein product [Albugo candida]) HSP 1 Score: 129.413 bits (324), Expect = 8.565e-31 Identity = 75/236 (31.78%), Postives = 134/236 (56.78%), Query Frame = 0
Query: 9 NIHFLGVARFQDRAIVASHAYNTV----IDL---TGVKE----VLKSD--QLSVRPGVHFSFASGGSSWHLMSDVEGRIFILISERTYPVRAAHACLEEFQRSFLAKTGTKSLEVKEKGLDKSSGEMLRKLCEKYDNLAEVDKLAAVMNKVDAVKLVLQENVQVALANCVALDNIEKAAEDLQAQAGMFKRNATTLKKQMCWKQLRMKMVMGL-AILAILLVIIIP--IAVASKRM 228
NI F+G+AR D+AI+ + ++ +DL T KE VL++ + V P S + +H + +F +I+ ++YP+R A ++ Q+ F+ K TK+L +E GLDK M++ L +YD+ +VDK++ V+++VD VK V+ N+QV L+N ++ +E+ DL QA +F+ + L+K M WK +++ + +GL AIL I++++ + +SK+M
Sbjct: 432 NIKFIGIARATDKAIICCYFHSNKSSMNVDLAECTKWKEMYAKVLRAPTWKTQVTPNARHSLDCDPNKFHFSMSNDELVFAVITVKSYPIRLAFQLIQTLQQEFVPKFATKALSCREHGLDKECKSMVQALATQYDDRTKVDKISEVLHQVDNVKSVMHTNIQVVLSNTEKMEVVEQKTNDLSEQAKVFRNSGRKLRKAMWWKNVKLTIAIGLCAILVIVIILAVSGVFKTSSKKM 667
BLAST of EWM27266.1 vs. NCBI_GenBank
Match: gi|635364143|emb|CCI47367.1| (unnamed protein product [Albugo candida]) HSP 1 Score: 129.413 bits (324), Expect = 9.919e-31 Identity = 73/224 (32.59%), Postives = 128/224 (57.14%), Query Frame = 0
Query: 9 NIHFLGVARFQDRAIVASHAYNTV----IDL---TGVKE----VLKSD--QLSVRPGVHFSFASGGSSWHLMSDVEGRIFILISERTYPVRAAHACLEEFQRSFLAKTGTKSLEVKEKGLDKSSGEMLRKLCEKYDNLAEVDKLAAVMNKVDAVKLVLQENVQVALANCVALDNIEKAAEDLQAQAGMFKRNATTLKKQMCWKQLRMKMVMGLAILAILLVIII 219
NI F+G+AR D+AI+ + ++ +DL T KE VL++ + V P S + +H + +F +I+ ++YP+R A ++ Q+ F+ K TK+L +E GLDK M++ L +YD+ +VDK++ V+++VD VK V+ N+QV L+N ++ +E+ DL QA +F+ + L+K M WK +++ + +GL AIL+++II
Sbjct: 466 NIKFIGIARATDKAIICCYFHSNKSSMNVDLAECTKWKEMYAKVLRAPTWKTQVTPNARHSLDCDPNKFHFSMSNDELVFAVITVKSYPIRLAFQLIQTLQQEFVPKFATKALSCREHGLDKECKSMVQALATQYDDRTKVDKISEVLHQVDNVKSVMHTNIQVVLSNTEKMEVVEQKTNDLSEQAKVFRNSGRKLRKAMWWKNVKLTIAIGLC--AILVIVII 687
BLAST of EWM27266.1 vs. NCBI_GenBank
Match: gi|635364144|emb|CCI47368.1| (unnamed protein product [Albugo candida]) HSP 1 Score: 129.413 bits (324), Expect = 1.063e-30 Identity = 73/224 (32.59%), Postives = 128/224 (57.14%), Query Frame = 0
Query: 9 NIHFLGVARFQDRAIVASHAYNTV----IDL---TGVKE----VLKSD--QLSVRPGVHFSFASGGSSWHLMSDVEGRIFILISERTYPVRAAHACLEEFQRSFLAKTGTKSLEVKEKGLDKSSGEMLRKLCEKYDNLAEVDKLAAVMNKVDAVKLVLQENVQVALANCVALDNIEKAAEDLQAQAGMFKRNATTLKKQMCWKQLRMKMVMGLAILAILLVIII 219
NI F+G+AR D+AI+ + ++ +DL T KE VL++ + V P S + +H + +F +I+ ++YP+R A ++ Q+ F+ K TK+L +E GLDK M++ L +YD+ +VDK++ V+++VD VK V+ N+QV L+N ++ +E+ DL QA +F+ + L+K M WK +++ + +GL AIL+++II
Sbjct: 462 NIKFIGIARATDKAIICCYFHSNKSSMNVDLAECTKWKEMYAKVLRAPTWKTQVTPNARHSLDCDPNKFHFSMSNDELVFAVITVKSYPIRLAFQLIQTLQQEFVPKFATKALSCREHGLDKECKSMVQALATQYDDRTKVDKISEVLHQVDNVKSVMHTNIQVVLSNTEKMEVVEQKTNDLSEQAKVFRNSGRKLRKAMWWKNVKLTIAIGLC--AILVIVII 683
BLAST of EWM27266.1 vs. NCBI_GenBank
Match: gi|635364142|emb|CCI47366.1| (unnamed protein product [Albugo candida]) HSP 1 Score: 129.413 bits (324), Expect = 1.273e-30 Identity = 73/224 (32.59%), Postives = 128/224 (57.14%), Query Frame = 0
Query: 9 NIHFLGVARFQDRAIVASHAYNTV----IDL---TGVKE----VLKSD--QLSVRPGVHFSFASGGSSWHLMSDVEGRIFILISERTYPVRAAHACLEEFQRSFLAKTGTKSLEVKEKGLDKSSGEMLRKLCEKYDNLAEVDKLAAVMNKVDAVKLVLQENVQVALANCVALDNIEKAAEDLQAQAGMFKRNATTLKKQMCWKQLRMKMVMGLAILAILLVIII 219
NI F+G+AR D+AI+ + ++ +DL T KE VL++ + V P S + +H + +F +I+ ++YP+R A ++ Q+ F+ K TK+L +E GLDK M++ L +YD+ +VDK++ V+++VD VK V+ N+QV L+N ++ +E+ DL QA +F+ + L+K M WK +++ + +GL AIL+++II
Sbjct: 535 NIKFIGIARATDKAIICCYFHSNKSSMNVDLAECTKWKEMYAKVLRAPTWKTQVTPNARHSLDCDPNKFHFSMSNDELVFAVITVKSYPIRLAFQLIQTLQQEFVPKFATKALSCREHGLDKECKSMVQALATQYDDRTKVDKISEVLHQVDNVKSVMHTNIQVVLSNTEKMEVVEQKTNDLSEQAKVFRNSGRKLRKAMWWKNVKLTIAIGLC--AILVIVII 756
BLAST of EWM27266.1 vs. NCBI_GenBank
Match: gi|953499896|emb|CEG38537.1| (vesicle-associated membrane protein 7b [Plasmopara halstedii]) HSP 1 Score: 122.865 bits (307), Expect = 1.572e-30 Identity = 66/231 (28.57%), Postives = 120/231 (51.95%), Query Frame = 0
Query: 9 NIHFLGVARFQDRAIVASHAY-------NTVIDLTGVKEVL------KSDQLSVRPGVHFSFASGGSSWHLMSDVEGRIFILISERTYPVRAAHACLEEFQRSFLAKTGTKSLEVKEKGLDKSSGEMLRKLCEKYDNLAEVDKLAAVMNKVDAVKLVLQENVQVALANCVALDNIEKAAEDLQAQAGMFKRNATTLKKQMCWKQLRMKMVMGLAILAILLVIIIPIAVASK 226
NI FL +AR D+ IVA + + N D+ +E+L + + V P S + +H + + +F I+ + YP+R A + Q + K G+K+L +E GLDK ++ + YD+ +VDKL+ VM++VD VK V+ N+QV L+N ++ +E+ DL QA +F+ L++QM WK +++ +++ + + +L +++ + V K
Sbjct: 14 NIKFLAIARATDKVIVACYMHTAGKPVRNGEGDMNVFREMLSKVIRAPTWKTQVTPNGRHSLDCDPNKFHFTMNNDELVFAAITSKDYPIRLAFQMISAIQTEIIPKFGSKALTCRENGLDKDCAKIFTAIAAGYDDRTKVDKLSDVMHQVDGVKTVMHNNIQVVLSNTEKMEVVEQKTNDLNEQAKVFRNTGRKLRRQMWWKNVKLTILLSVCAILVLFILLAVLGVFKK 244
BLAST of EWM27266.1 vs. NCBI_GenBank
Match: gi|675188869|ref|XP_008903319.1| (hypothetical protein PPTG_10394 [Phytophthora parasitica INRA-310] >gi|567993853|gb|ETL44021.1| hypothetical protein L916_05611 [Phytophthora parasitica] >gi|568096781|gb|ETN11528.1| hypothetical protein PPTG_10394 [Phytophthora parasitica INRA-310] >gi|970660753|gb|KUF98278.1| hypothetical protein AM588_10010877 [Phytophthora nicotianae]) HSP 1 Score: 120.168 bits (300), Expect = 1.549e-29 Identity = 63/214 (29.44%), Postives = 113/214 (52.80%), Query Frame = 0
Query: 9 NIHFLGVARFQDRAIVASHAYNT--------VIDLTGVKEVL------KSDQLSVRPGVHFSFASGGSSWHLMSDVEGRIFILISERTYPVRAAHACLEEFQRSFLAKTGTKSLEVKEKGLDKSSGEMLRKLCEKYDNLAEVDKLAAVMNKVDAVKLVLQENVQVALANCVALDNIEKAAEDLQAQAGMFKRNATTLKKQMCWKQLRMKMVMGL 208
NI FL +AR D+ IVAS+ + + +++ +E+L + + V P S + +H + + +F I+ + YP+R A + Q + K G+K+L +E GLDK + + YD+ +VDKL+ VM++VD VK V+ N+QV L+N ++ +E+ DL QA +F+ L++QM WK +++ +++G+
Sbjct: 15 NIKFLAIARATDKVIVASYMHQSGGKPARGGEVEVNTFREMLSKVIRAPTWKTQVTPNGRHSLECDPNKFHFTMNNDELVFAAITAKDYPIRLAFQMISAVQTEIVPKYGSKALTCRENGLDKDCAKAFAAIASGYDDRTKVDKLSEVMHQVDGVKTVMHNNIQVVLSNTEKMEVVEQKTNDLNEQAKVFRNTGRKLRRQMWWKNVKLTILLGI 228
BLAST of EWM27266.1 vs. NCBI_GenBank
Match: gi|970651532|gb|KUF90339.1| (Vesicle-associated membrane protein 7B [Phytophthora nicotianae]) HSP 1 Score: 119.013 bits (297), Expect = 4.928e-29 Identity = 63/214 (29.44%), Postives = 112/214 (52.34%), Query Frame = 0
Query: 9 NIHFLGVARFQDRAIVASHAYNT--------VIDLTGVKEVL------KSDQLSVRPGVHFSFASGGSSWHLMSDVEGRIFILISERTYPVRAAHACLEEFQRSFLAKTGTKSLEVKEKGLDKSSGEMLRKLCEKYDNLAEVDKLAAVMNKVDAVKLVLQENVQVALANCVALDNIEKAAEDLQAQAGMFKRNATTLKKQMCWKQLRMKMVMGL 208
NI FL +AR D+ IVAS+ + + +++ +E+L + + V P S + +H + + +F I+ + YP+R A + Q + K G+K+L +E GLDK + + YD+ +VDKL+ VM++VD VK V+ N+QV L+N ++ +E+ DL QA +F+ L++QM WK + + +++G+
Sbjct: 15 NIKFLAIARATDKVIVASYMHQSGGKPARGGEVEVNTFREMLSKVIRAPTWKTQVTPNGRHSLECDPNKFHFTMNNDELVFAAITAKDYPIRLAFQMISAVQTEIVPKYGSKALTCRENGLDKDCAKAFAAIASGYDDRTKVDKLSEVMHQVDGVKTVMHNNIQVVLSNTEKMEVVEQKTNDLNEQAKVFRNTGRKLRRQMWWKNVXLTILLGI 228 The following BLAST results are available for this feature:
BLAST of EWM27266.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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