rna343, rna343 (mRNA) Nannochloropsis gaditana

Overview
Namerna343
Unique Namerna343
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length2140
Alignment locationCM002455.1:843257..845677 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100003g153.1853.mrna
Orig protein idgnl|cribi|Naga_100003g153.1853
GbkeymRNA
Noteencoded by transcript variant 1; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002455.1supercontigCM002455.1:843257..845677 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100003g153gene330Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna343rna343-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM30336.1cds343Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna343 ID=rna343|Name=rna343|organism=Nannochloropsis gaditana|type=mRNA|length=2140bp
ACAGGCGATGGATTGCTATGACTGCTCGCAGGCAGACGGTGGCAGCGAGA
CCTATGGTCATCAATGCACCAGAAAGACAGGGTTAGGTTGTGTGAAGAGC
CTGAAATGTCAGACTCACCGCCTTGGACTGAATTGGTCGGCCTGATGGGC
TTGCCGGTTTCGATATACGAAGACCCTTGGCCCATTTTACTCCTTTGTAG
AAAAAAAATAAGACAGCATGAACCTCGACGCATAGCAATTCGTCTCCTTA
CTGCGTGAAAGGAACATGAGCAGCGATGGATGTGTAAAATGACGATTCGC
CATAAGTCGTCCTCTTTTTGGGTCGTATACTATATAAGATATGACCTTAA
AGTTTGTGTATTTTATCATTCTATAAACCATTGATCTTCGTGTGCATCGC
CCCTTTGACCGGACATCTATCTCTAGTCTAATATCATCGCTTTCAATACT
CAGGAATGACATTGGCTCACCCACTTTTGAGTTCAAAAAAGGATGTCTTA
AAATCCATTCCATACTTTAATATCCAGTAGATTGGTCCGTGAGTCGGGTT
GGATGTCGATATGTCGAAAACATCTTGGTCAGGATACACATCTTGAGCAA
AAGGTGTTCATGTCTTATCATGGAAGCACTTATCAAACTTTTACAAATGC
GCTTGGCGAGAGATAAAGCTCCTTTATCCTCTGTGTCAATCCCTCGCTAT
GCTACTTTCATCATTAGTGTCTTTCGAAGCACTCACTAATATTTAGAGGG
CAGGTTACGTAGCTTGACATCATGTGCTGTTTCCAAGGAGATAAAGCGGC
TCGTCCGAAGAAAAGGCCTCTATCATGCGGACATGGTCTCATTTAGATCT
TTTCGTCTCATCGACAGATAGGATCTACACTCAAGTCTACTTGTCCACAT
TCGAAACGGAGATTATGGTAAAACGTCTTGAGCCATTTGGCATTTTACAG
ATTCTAAAGCTTGTGCAGAGATTTGATCCAATTTTGATTCTGGAATGTCA
CGATATATATTTTTTCCTACTCCCTCGGGGTCAATAAGCACAATCGTTTG
TCGCACAGTTCGGCCCATAAACAGGCACACAACCATATATAAGCGCGTTG
TTATGCAAATGTATGATAAAACTAATATTCAAGTGTAGCCCGCGTGTGTT
CTTCAAATTTCATACAGGTGTTGCCACTGCCAATATAAGTACGGGCGGGC
ATTCCTGAGAAGAATATAAACCCATGCAAACTCAGGGAACATGAGGAACC
ATAAGTTTCTGTCCGGGCCGATGAATATGAGAGAAATTCCTGACTCTGCA
TGTCAGAAAAAATCCGTCGGAATGCATTGCATTGCCCGCCTTTTTGACAA
GAGACGTGTCATCCTTGTTGTAAAAGTAGATAACAGCATGCTTTGCTCGA
AGGTCCGTCAGTGCCGCCATGTCACCATTTTTATTTGTCAATGCAAAAGA
TGGAGCTGAGGATCCAATTTCTAAGCCCATTAGGTTCTTTCCTGCTTTTT
TGCAAATGTTTTGGCCTTGGTCTTTTTCCTGTGTTGCTATACGATTCAGC
ATACTAGATACCGATTCCTTGCTCTGGTGCTGTTTTTGGTCAAGGATGTC
ACTCGGAATGTTCTTACTCCACCTCTCTTTGTCCTCGCTTTTAATTTCTA
ACCTGCCAATTTCGTTACTCTTTTTTTCAAGTGTGGTGCTTTGCTCTTCT
TTGTCCTCATCAAGCTACGCCTTCTTGGAGACAGGTACTTAATTTCTTGG
CTTTTACTTCTTGCGTCCTCTTCCACAATTATCTCTTCCTCTTTCCCTTG
TTGTTTTACTTTGTAGGCTTTCTCCGCATTGTGTTGGTCTATCTGTTCAC
TCGTGTGCTCCTGGCGCTTTTCTTGTTCCTGTTCCTCATTCCAACTCAGG
CTCTTGGTTTCTTTGCTTTTCTGCTCTTCTTCCATCTTCGGCTCCCCATG
CTTCATAGTTAACGACCTTAAGACTGAACAAATTTGATGTCTGGATATTC
TCATATGAAGGTGGTGTCTGTCTTACGTACATGGCGAACTCGCCTAAAGT
CAAGATAAGAGATTTTTTCGGGTCTCTATAGCTTTCTTGGAAATCTTGTT
ACGGAACTTGTAAACTTCACTTTCGCAACGATACTGAGGA
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protein sequence of rna343

>rna343-protein ID=rna343-protein|Name=rna343|organism=Nannochloropsis gaditana|type=polypeptide|length=107bp
MSPFLFVNAKDGAEDPISKPIRFFPAFLQMFWPWSFSCVAIRFSILDTDS
LLWCCFWSRMSLGMFLLHLSLSSLLISNLPISLLFFSSVVLCSSLSSSSY
AFLETGT
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mRNA from alignment at CM002455.1:843257..845677+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna343 ID=rna343|Name=rna343|organism=Nannochloropsis gaditana|type=mRNA|length=2421bp|location=Sequence derived from alignment at CM002455.1:843257..845677+ (Nannochloropsis gaditana)
ACAGGCGATGGATTGCTATGACTGCTCGCAGGCAGACGGTGGCAGCGAGA
CCTATGGTCATCAATGCACCAGAAAGACAGGGTTAGGTTGTGTGAAGAGC
CTGAAATGTCAGACTCACCGCCTTGGACTGAATTGGTCGGCCTGATGGGC
TTGCCGGTTTCGATATACGAAGACCCTTGGCCCATTTTACTCCTTTGTAG
AAAAAAAATAAGACAGCATGAACCTCGACGCATAGCAATTCGTCTCCTTA
CTGCGTGAAAGGAACATGAGCAGCGATGGATGTGTAAAATGACGATTCGC
CATAAGTCGTCCTCTTTTTGGGTCGTATACTATATAAGATATGACCTTAA
AGTTTGTGTATTTTATCATTCTATAAACCATTGATCTTCGTGTGCATCGC
CCCTTTGACCGGACATCTATCTCTAGTCTAATATCATCGCTTTCAATACT
CAGGAATGACATTGGCTCACCCACTTTTGAGTTCAAAAAAGGATGTCTTA
AAATCCATTCCATACTTTAATATCCAGTAGATTGGTCCGTGAGTCGGGTT
GGATGTCGATATGTCGAAAACATCTTGGTCAGGATACACATCTTGAGCAA
AAGGTGTTCATGTCTTATCATGGAAGCACTTATCAAACTTTTACAAATGC
GCTTGGCGAGAGATAAAGCTCCTTTATCCTCTGTGTCAATCCCTCGCTAT
GCTACTTTCATCATTAGTGTCTTTCGAAGCACTCACTAATATTTAGAGGG
CAGGTTACGTAGCTTGACATCATGTGCTGTTTCCAAGGAGATAAAGCGGC
TCGTCCGAAGAAAAGGCCTCTATCATGCGGACATGGTCTCATTTAGATCT
TTTCGTCTCATCGACAGATAGGATCTACACTCAAGTCTACTTGTCCACAT
TCGAAACGGAGATTATGGTAAAACGTCTTGAGCCATTTGGCATTTTACAG
ATTCTAAAGCTTGTGCAGAGATTTGATCCAATTTTGATTCTGGAATGTCA
CGATATATATTTTTTCCTACTCCCTCGGGGTCAATAAGCACAATCGTTTG
TCGCACAGTTCGGCCCATAAACAGGCACACAACCATATATAAGCGCGTTG
TTATGCAAATGTATGATAAAACTAATATTCAAGTGTAGCCCGCGTGTGTT
CTTCAAATTTCATACAGGTGTTGCCACTGCCAATATAAGTACGGGCGGGC
ATTCCTGAGAAGAATATAAACCCATGCAAACTCAGGTAACGAGCACATTT
TGTCCTGCTTAAAGAGAGGAAATGCCACGTCGACCGGTACTGAGTGATGA
TTACCTACCCGTAGATTATGAAATGCACGGGCTACCTCTTTGTTTGAGTC
CGAAAGAAGCGGAAACGCCAGTCTGACTTTGTCCTTAAATCCCTTGTGGG
ATTCGATGCTATGCGTAGTAGGCGGTGTTGATCGCCACAACTTAAGATTT
GTTAATGGTGGTAACAAATGAAGATAACGACTTGATGCTTAATACTTTCC
CCACTAAATTTCATAGGGAACATGAGGAACCATAAGTTTCTGTCCGGGCC
GATGAATATGAGAGAAATTCCTGACTCTGCATGTCAGAAAAAATCCGTCG
GAATGCATTGCATTGCCCGCCTTTTTGACAAGAGACGTGTCATCCTTGTT
GTAAAAGTAGATAACAGCATGCTTTGCTCGAAGGTCCGTCAGTGCCGCCA
TGTCACCATTTTTATTTGTCAATGCAAAAGATGGAGCTGAGGATCCAATT
TCTAAGCCCATTAGGTTCTTTCCTGCTTTTTTGCAAATGTTTTGGCCTTG
GTCTTTTTCCTGTGTTGCTATACGATTCAGCATACTAGATACCGATTCCT
TGCTCTGGTGCTGTTTTTGGTCAAGGATGTCACTCGGAATGTTCTTACTC
CACCTCTCTTTGTCCTCGCTTTTAATTTCTAACCTGCCAATTTCGTTACT
CTTTTTTTCAAGTGTGGTGCTTTgctcttctttgtcctcaTCAAGCTACG
CCTTCTTGGAGACAGGTACTTAATTTCTTGGCTTTTACTTCttgcgtcct
cttccacaattatctcttcctctttcccttgttGTTTTACTTTGTAGGCT
TTCTCCGCATTGTGTTGGTCTATCTGTTCACTCGTGTGCTCCTGGCGCTT
TTCTTGTTCCTGTTCCTCATTCCAACTCAGGCTCTTGGTTTCTTTGCTTt
tctgctcttcttccatctTCGGCTCCCCATGCTTCATAGTTAACGACCTT
AAGACTGAACAAATTTGATGTCTGGATATTCTCATATGAAGGTGGTGTCT
GTCTTACGTACATGGCGAACTCGCCTAAAGTCAAGATAAGAGATTTTTTC
GGGTCTCTATAGCTTTCTTGGAAATCTTGTTACGGAACTTGTAAACTTCA
CTTTCGCAACGATACTGAGGA
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Coding sequence (CDS) from alignment at CM002455.1:843257..845677+

>rna343 ID=rna343|Name=rna343|organism=Nannochloropsis gaditana|type=CDS|length=324bp|location=Sequence derived from alignment at CM002455.1:843257..845677+ (Nannochloropsis gaditana)
ATGTCACCATTTTTATTTGTCAATGCAAAAGATGGAGCTGAGGATCCAAT
TTCTAAGCCCATTAGGTTCTTTCCTGCTTTTTTGCAAATGTTTTGGCCTT
GGTCTTTTTCCTGTGTTGCTATACGATTCAGCATACTAGATACCGATTCC
TTGCTCTGGTGCTGTTTTTGGTCAAGGATGTCACTCGGAATGTTCTTACT
CCACCTCTCTTTGTCCTCGCTTTTAATTTCTAACCTGCCAATTTCGTTAC
TCTTTTTTTCAAGTGTGGTGCTTTgctcttctttgtcctcaTCAAGCTAC
GCCTTCTTGGAGACAGGTACTTAA
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Synonyms
Publications