EWM30336.1, cds343 (CDS) Nannochloropsis gaditana

Overview
NameEWM30336.1
Unique Namecds343
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002455.1:844956..845279 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM30336.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100003g153.1853.mrna
GbkeyCDS
Noteencoded by transcript variant 1; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002455.1supercontigCM002455.1:844956..845279 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
[Close]
BLAST of EWM30336.1 vs. NCBI_GenBank
Match: gi|585112995|gb|EWM30336.1| (hypothetical protein Naga_100003g153 [Nannochloropsis gaditana] >gi|585112996|gb|EWM30337.1| hypothetical protein Naga_100003g153 [Nannochloropsis gaditana])

HSP 1 Score: 207.608 bits (527), Expect = 1.030e-67
Identity = 107/107 (100.00%), Postives = 107/107 (100.00%), Query Frame = 0 
Query:    1 MSPFLFVNAKDGAEDPISKPIRFFPAFLQMFWPWSFSCVAIRFSILDTDSLLWCCFWSRMSLGMFLLHLSLSSLLISNLPISLLFFSSVVLCSSLSSSSYAFLETGT 107
            MSPFLFVNAKDGAEDPISKPIRFFPAFLQMFWPWSFSCVAIRFSILDTDSLLWCCFWSRMSLGMFLLHLSLSSLLISNLPISLLFFSSVVLCSSLSSSSYAFLETGT
Sbjct:    1 MSPFLFVNAKDGAEDPISKPIRFFPAFLQMFWPWSFSCVAIRFSILDTDSLLWCCFWSRMSLGMFLLHLSLSSLLISNLPISLLFFSSVVLCSSLSSSSYAFLETGT 107
The following BLAST results are available for this feature:
BLAST of EWM30336.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 1
Match NameE-valueIdentityDescription
gi|585112995|gb|EWM30336.1|1.030e-67100.00hypothetical protein Naga_100003g153 [Nannochlorop... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna343rna343Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications