rna3429, rna3429 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna3429
Unique Name	rna3429
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1050
Alignment location	CM002461.1:397617..398943 +

Link to JBrowse

Properties


Property Name	Value
Product	chord family protein
Orig transcript id	gnl\|cribi\|Naga_100038g26.7696.mrna
Orig protein id	gnl\|cribi\|Naga_100038g26.7696
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002461.1	supercontig	CM002461.1:397617..398943 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100038g26	gene3303	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna3429	rna3429-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM27241.1	cds3420	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002461.1:397617..398943+
coding sequence from alignment at CM002461.1:397617..398943+

mRNA sequence

>rna3429 ID=rna3429|Name=rna3429|organism=Nannochloropsis gaditana|type=mRNA|length=1050bp
ATGCAAGATCTTGACTCCCCAGCAGCGGAAAATGCATTCACCCAGGCTTT
ACAGCAACCAAACGTCGTCAAAGACCAATTCGACCTGTTGTACGCCTCCA
TTTTTGGAAGAAAGGACGACAGTGGCAATCAAATTACTGAAGACGACATT
GATGGCGCTATTGTCTTATCCTCTCAAAATCATCAGGGAAAAGTCTCTTC
AAAGTACTTGGAGGACAACAGATGGATGATTGACCGGCATGACGAAGAGG
AGGAAGTGACACGGCTGAAAACGCCTGTGGCTCCCGTTTCCAAGAAGCGA
CGAAGAGCTTCCTTCGTTGACTTTGAAAAAGTTGAAGCATGTCGGGCGCT
TATATCCCCGCGTCCACCCAATTACGACGAAGAGAAATTGAGGAGTGTGT
GGAAACCGTTAGCACCAGCGGAGGACGATTTCTTGGACGTATCCCTTTCA
ATTTCCCGACAACGTGGTCCAAATACTGGATACAAGGTAGCTGAAGAAAA
GGCGATGAAATCAAAACAGGCTGTGCGCTGTCGGAAAGGAGAAGGAGGAG
AGGAAAGCGACGTTTCGTGCGGGGGCGAATGGCTCCAGTCCCGCACTGCT
CTGGTTTCCGAGCGCAACTCAATTGTACCCAAGCATGTAAACACCAGCAC
CAGCAGCGATACGGCACATGTAACACCTACCATGCCATGCAAGGCCCGTG
GAGCCGCCCCATTGACGGCCGGCGGCACAAGGAGGTTGTCCTCGGGCTCA
GGCAGCAGCACAGGAAGTCACCAGTCGAGATCGATGGGATCTTTCTTCTC
TCCTCGCCCTCGCTTTTTAGGCTTATCGCCTGAGGGCGCTGCTTATGGCA
CGGAAGGGAGGGGGGGCTCAGTGATGGAGAAGAAGAGCTTGGGTCGGGAG
GATTCAGGTGGAAAGAGCGCCTCCGCGGTGTCAAAGCGTTGCCTTCCGGG
ATGTACCCCTGCCGCGAGCTATACTCAAGAGAAACCCATGCCTCCTTCGG
CGCTTTTCAGTGTGCTGAAAAAGAGCATTTTCTCGCATAAAGCCTTTTGA

protein sequence of rna3429

>rna3429-protein ID=rna3429-protein|Name=rna3429|organism=Nannochloropsis gaditana|type=polypeptide|length=335bp
MKLYVHYEEAGQDEKALTLKLTLPKSWAEQPLLQVLELFIESYNKKKTGL
PPLDKDFVHMEKAGGVILPVGNIVSDMLSDRDDLYIRSGPGPARGKIAHL
SSPPNAHASSESSTGLLRCKNYGCNQSFSEENNSEEACRFHKAPPVFHDT
KKGWSCCAKRVYDWDEFHTIEGCTTGRHSLIDPKEIFAPSPTLAAAAQAE
RGDCSNTSSAATVIKSIDEFNQSNPNAAAACKTAASMTQAGTRCTVKPDG
SATCLNKGCQKDYLLKENHPSACRYHAAGPVFHDAGKYWSCCPGTVKYDF
DDFLKIPGCMLSSHYDGSQESLEAFTRHAKTSEGT

mRNA from alignment at CM002461.1:397617..398943+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna3429 ID=rna3429|Name=rna3429|organism=Nannochloropsis gaditana|type=mRNA|length=1327bp|location=Sequence derived from alignment at CM002461.1:397617..398943+ (Nannochloropsis gaditana)
ATGAAACTCTATGTGCACTACGAGGAGGCTGGTCAGGATGAAAAGGCATT
GACGCTTAAGTTGACTCTGCCCAAAAGCTGGGCGGAGCAGCCGTTGCTTC
AAGTACTGGAGCTGTTCATCGAATCCTACAACAAGAAAAAGACCGGTCTA
CCTCCCTTGGACAAAGACTTTGTCCACATGGAAAAAGCTGGGTAAGTCCT
TACTCGTGACAGCGTTCCCTTTCTCCAGACTAGACGCCTAATAGTGTTCT
AATGAACCACTGGGACACGCCTCGCTGCCTGTGCACCATGCTCCATACTC
AACGCTGCTACAGGGGCGTAATCCTTCCAGTCGGCAACATTGTGAGCGAC
ATGTTGAGCGATAGAGATGATTTGTATATCAGATccgggccagggcctgc
tcgtGGGAAGATTGCCCATCTCAGTTCGCCCCCAAACGCGCACGCTTCGA
GTGAGTCGAGCACAGGATTGTTGCGCTGCAAAAACTATGGATGCAATCAG
TCATTTTCGGAAGAAAACAATTCAGAAGAGGCGTGCCGCTTTCACAAGGC
ACCCCCCGTCTTTCATGATACGAAGAAAGGGTGGTCGTGCTGCGCGAAGC
GAGTATATGACTGGGACGAGTTCCATACGGTAAGCGTGGAAGTGTTCGTT
CTCGGCCCCAGGACTTTGTTTTGAGGCAATTGGTGTACTTTAATTGGCGG
ATAAAGGGGGGACTCACAACTTTCGATATTCACCGTCTCCAGATCGAGGG
GTGCACCACAGGACGGCACAGTCTCATCGATCCGAAGGAAATTTTCGCGC
CGTCCCCCACCCTGGCTGCAGCCGCGCAGGCCGAGAGGGGAGATTGCAGC
AATACGTCAAGCGCTGCTACAGTCATCAAGAGCATTGATGAATTCAATCA
GTCGAATCCAAATGCCGCCGCTGCATGCAAAACAGCAGCCTCGATGACGC
AGGCGGGCACGCGCTGCACCGTCAAACCGGACGGGTCTGCCACCTGTTTG
AACAAAGGCTGCCAAAAGGACTACTTGCTCAAGGAGAATCACCCCTCTGC
ATGTCGGTAAGGACACCGCGCTCGATGGAATCGTGAGCTTTACGTTCCCA
CGCCAACACTTCgccatttctcctcccttcctttctttagCTACCACGCA
GCCGGCCCCGTCTTCCACGACGCGGGTAAATACTGGTCATGTTGCCCTGG
AACGGTCAAGTACGACTTCGACGACTTTCTCAAGATCCCTGGATGCATGC
TCAGTAGTCATTACGACGGAAGCCAGGAGAGCCTGGAGGCGTTCACTAGA
CACGCCAAAACGTCTGAGGGCACATGA

Coding sequence (CDS) from alignment at CM002461.1:397617..398943+

>rna3429 ID=rna3429|Name=rna3429|organism=Nannochloropsis gaditana|type=CDS|length=4032bp|location=Sequence derived from alignment at CM002461.1:397617..398943+ (Nannochloropsis gaditana)
ATGAAACTCTATGTGCACTACGAGGAGGCTGGTCAGGATGAAAAGGCATT
GACGCTTAAGTTGACTCTGCCCAAAAGCTGGGCGGAGCAGCCGTTGCTTC
AAGTACTGGAGCTGTTCATCGAATCCTACAACAAGAAAAAGACCGGTCTA
CCTCCCTTGGACAAAGACTTTGTCCACATGGAAAAAGCTGGGGGCGTAAT
CCTTCCAGTCGGCAACATTGTGAGCGACATGTTGAGCGATAGAGATGATT
TGTATATCAGATccgggccagggcctgctcgtGGGAAGATTGCCCATCTC
AGTTCGCCCCCAAACGCGCACGCTTCGAGTGAGTCGAGCACAGGATTGTT
GCGCTGCAAAAACTATGGATGCAATCAGTCATTTTCGGAAGAAAACAATT
CAGAAGAGGCGTGCCGCTTTCACAAGGCACCCCCCGTCTTTCATGATACG
AAGAAAGGGTGGTCGTGCTGCGCGAAGCGAGTATATGACTGGGACGAGTT
CCATACGATCGAGGGGTGCACCACAGGACGGCACAGTCTCATCGATCCGA
AGGAAATTTTCGCGCCGTCCCCCACCCTGGCTGCAGCCGCGCAGGCCGAG
AGGGGAGATTGCAGCAATACGTCAAGCGCTGCTACAGTCATCAAGAGCAT
TGATGAATTCAATCAGTCGAATCCAAATGCCGCCGCTGCATGCAAAACAG
CAGCCTCGATGACGCAGGCGGGCACGCGCTGCACCGTCAAACCGGACGGG
TCTGCCACCTGTTTGAACAAAGGCTGCCAAAAGGACTACTTGCTCAAGGA
GAATCACCCCTCTGCATGTCGCTACCACGCAGCCGGCCCCGTCTTCCACG
ACGCGGGTAAATACTGGTCATGTTGCCCTGGAACGGTCAAGTACGACTTC
GACGACTTTCTCAAGATCCCTGGATGCATGCTCAGTAGTCATTACGACGG
AAGCCAGGAGAGCCTGGAGGCGTTCACTAGACACGCCAAAACGTCTGAGG
GCACATGAATGAAACTCTATGTGCACTACGAGGAGGCTGGTCAGGATGAA
AAGGCATTGACGCTTAAGTTGACTCTGCCCAAAAGCTGGGCGGAGCAGCC
GTTGCTTCAAGTACTGGAGCTGTTCATCGAATCCTACAACAAGAAAAAGA
CCGGTCTACCTCCCTTGGACAAAGACTTTGTCCACATGGAAAAAGCTGGG
GGCGTAATCCTTCCAGTCGGCAACATTGTGAGCGACATGTTGAGCGATAG
AGATGATTTGTATATCAGATccgggccagggcctgctcgtGGGAAGATTG
CCCATCTCAGTTCGCCCCCAAACGCGCACGCTTCGAGTGAGTCGAGCACA
GGATTGTTGCGCTGCAAAAACTATGGATGCAATCAGTCATTTTCGGAAGA
AAACAATTCAGAAGAGGCGTGCCGCTTTCACAAGGCACCCCCCGTCTTTC
ATGATACGAAGAAAGGGTGGTCGTGCTGCGCGAAGCGAGTATATGACTGG
GACGAGTTCCATACGATCGAGGGGTGCACCACAGGACGGCACAGTCTCAT
CGATCCGAAGGAAATTTTCGCGCCGTCCCCCACCCTGGCTGCAGCCGCGC
AGGCCGAGAGGGGAGATTGCAGCAATACGTCAAGCGCTGCTACAGTCATC
AAGAGCATTGATGAATTCAATCAGTCGAATCCAAATGCCGCCGCTGCATG
CAAAACAGCAGCCTCGATGACGCAGGCGGGCACGCGCTGCACCGTCAAAC
CGGACGGGTCTGCCACCTGTTTGAACAAAGGCTGCCAAAAGGACTACTTG
CTCAAGGAGAATCACCCCTCTGCATGTCGCTACCACGCAGCCGGCCCCGT
CTTCCACGACGCGGGTAAATACTGGTCATGTTGCCCTGGAACGGTCAAGT
ACGACTTCGACGACTTTCTCAAGATCCCTGGATGCATGCTCAGTAGTCAT
TACGACGGAAGCCAGGAGAGCCTGGAGGCGTTCACTAGACACGCCAAAAC
GTCTGAGGGCACATGAATGAAACTCTATGTGCACTACGAGGAGGCTGGTC
AGGATGAAAAGGCATTGACGCTTAAGTTGACTCTGCCCAAAAGCTGGGCG
GAGCAGCCGTTGCTTCAAGTACTGGAGCTGTTCATCGAATCCTACAACAA
GAAAAAGACCGGTCTACCTCCCTTGGACAAAGACTTTGTCCACATGGAAA
AAGCTGGGGGCGTAATCCTTCCAGTCGGCAACATTGTGAGCGACATGTTG
AGCGATAGAGATGATTTGTATATCAGATccgggccagggcctgctcgtGG
GAAGATTGCCCATCTCAGTTCGCCCCCAAACGCGCACGCTTCGAGTGAGT
CGAGCACAGGATTGTTGCGCTGCAAAAACTATGGATGCAATCAGTCATTT
TCGGAAGAAAACAATTCAGAAGAGGCGTGCCGCTTTCACAAGGCACCCCC
CGTCTTTCATGATACGAAGAAAGGGTGGTCGTGCTGCGCGAAGCGAGTAT
ATGACTGGGACGAGTTCCATACGATCGAGGGGTGCACCACAGGACGGCAC
AGTCTCATCGATCCGAAGGAAATTTTCGCGCCGTCCCCCACCCTGGCTGC
AGCCGCGCAGGCCGAGAGGGGAGATTGCAGCAATACGTCAAGCGCTGCTA
CAGTCATCAAGAGCATTGATGAATTCAATCAGTCGAATCCAAATGCCGCC
GCTGCATGCAAAACAGCAGCCTCGATGACGCAGGCGGGCACGCGCTGCAC
CGTCAAACCGGACGGGTCTGCCACCTGTTTGAACAAAGGCTGCCAAAAGG
ACTACTTGCTCAAGGAGAATCACCCCTCTGCATGTCGCTACCACGCAGCC
GGCCCCGTCTTCCACGACGCGGGTAAATACTGGTCATGTTGCCCTGGAAC
GGTCAAGTACGACTTCGACGACTTTCTCAAGATCCCTGGATGCATGCTCA
GTAGTCATTACGACGGAAGCCAGGAGAGCCTGGAGGCGTTCACTAGACAC
GCCAAAACGTCTGAGGGCACATGAATGAAACTCTATGTGCACTACGAGGA
GGCTGGTCAGGATGAAAAGGCATTGACGCTTAAGTTGACTCTGCCCAAAA
GCTGGGCGGAGCAGCCGTTGCTTCAAGTACTGGAGCTGTTCATCGAATCC
TACAACAAGAAAAAGACCGGTCTACCTCCCTTGGACAAAGACTTTGTCCA
CATGGAAAAAGCTGGGGGCGTAATCCTTCCAGTCGGCAACATTGTGAGCG
ACATGTTGAGCGATAGAGATGATTTGTATATCAGATccgggccagggcct
gctcgtGGGAAGATTGCCCATCTCAGTTCGCCCCCAAACGCGCACGCTTC
GAGTGAGTCGAGCACAGGATTGTTGCGCTGCAAAAACTATGGATGCAATC
AGTCATTTTCGGAAGAAAACAATTCAGAAGAGGCGTGCCGCTTTCACAAG
GCACCCCCCGTCTTTCATGATACGAAGAAAGGGTGGTCGTGCTGCGCGAA
GCGAGTATATGACTGGGACGAGTTCCATACGATCGAGGGGTGCACCACAG
GACGGCACAGTCTCATCGATCCGAAGGAAATTTTCGCGCCGTCCCCCACC
CTGGCTGCAGCCGCGCAGGCCGAGAGGGGAGATTGCAGCAATACGTCAAG
CGCTGCTACAGTCATCAAGAGCATTGATGAATTCAATCAGTCGAATCCAA
ATGCCGCCGCTGCATGCAAAACAGCAGCCTCGATGACGCAGGCGGGCACG
CGCTGCACCGTCAAACCGGACGGGTCTGCCACCTGTTTGAACAAAGGCTG
CCAAAAGGACTACTTGCTCAAGGAGAATCACCCCTCTGCATGTCGCTACC
ACGCAGCCGGCCCCGTCTTCCACGACGCGGGTAAATACTGGTCATGTTGC
CCTGGAACGGTCAAGTACGACTTCGACGACTTTCTCAAGATCCCTGGATG
CATGCTCAGTAGTCATTACGACGGAAGCCAGGAGAGCCTGGAGGCGTTCA
CTAGACACGCCAAAACGTCTGAGGGCACATGA

Synonyms

Publications