EWM27241.1, cds3420 (CDS) Nannochloropsis gaditana

Overview
NameEWM27241.1
Unique Namecds3420
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002461.1:397617..397807 +
Alignment locationCM002461.1:397930..398245 +
Alignment locationCM002461.1:398359..398672 +
Alignment locationCM002461.1:398757..398943 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM27241.1
Productchord family protein
Orig transcript idgnl|cribi|Naga_100038g26.7696.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002461.1supercontigCM002461.1:397617..397807 +
CM002461.1supercontigCM002461.1:397930..398245 +
CM002461.1supercontigCM002461.1:398359..398672 +
CM002461.1supercontigCM002461.1:398757..398943 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: INTERPRO
TermDefinition
IPR007051CHORD
Homology
BLAST of EWM27241.1 vs. NCBI_GenBank
Match: gi|585109422|gb|EWM27241.1| (chord family protein [Nannochloropsis gaditana])

HSP 1 Score: 701.819 bits (1810), Expect = 0.000e+0
Identity = 335/335 (100.00%), Postives = 335/335 (100.00%), Query Frame = 0
Query:    1 MKLYVHYEEAGQDEKALTLKLTLPKSWAEQPLLQVLELFIESYNKKKTGLPPLDKDFVHMEKAGGVILPVGNIVSDMLSDRDDLYIRSGPGPARGKIAHLSSPPNAHASSESSTGLLRCKNYGCNQSFSEENNSEEACRFHKAPPVFHDTKKGWSCCAKRVYDWDEFHTIEGCTTGRHSLIDPKEIFAPSPTLAAAAQAERGDCSNTSSAATVIKSIDEFNQSNPNAAAACKTAASMTQAGTRCTVKPDGSATCLNKGCQKDYLLKENHPSACRYHAAGPVFHDAGKYWSCCPGTVKYDFDDFLKIPGCMLSSHYDGSQESLEAFTRHAKTSEGT 335
            MKLYVHYEEAGQDEKALTLKLTLPKSWAEQPLLQVLELFIESYNKKKTGLPPLDKDFVHMEKAGGVILPVGNIVSDMLSDRDDLYIRSGPGPARGKIAHLSSPPNAHASSESSTGLLRCKNYGCNQSFSEENNSEEACRFHKAPPVFHDTKKGWSCCAKRVYDWDEFHTIEGCTTGRHSLIDPKEIFAPSPTLAAAAQAERGDCSNTSSAATVIKSIDEFNQSNPNAAAACKTAASMTQAGTRCTVKPDGSATCLNKGCQKDYLLKENHPSACRYHAAGPVFHDAGKYWSCCPGTVKYDFDDFLKIPGCMLSSHYDGSQESLEAFTRHAKTSEGT
Sbjct:    1 MKLYVHYEEAGQDEKALTLKLTLPKSWAEQPLLQVLELFIESYNKKKTGLPPLDKDFVHMEKAGGVILPVGNIVSDMLSDRDDLYIRSGPGPARGKIAHLSSPPNAHASSESSTGLLRCKNYGCNQSFSEENNSEEACRFHKAPPVFHDTKKGWSCCAKRVYDWDEFHTIEGCTTGRHSLIDPKEIFAPSPTLAAAAQAERGDCSNTSSAATVIKSIDEFNQSNPNAAAACKTAASMTQAGTRCTVKPDGSATCLNKGCQKDYLLKENHPSACRYHAAGPVFHDAGKYWSCCPGTVKYDFDDFLKIPGCMLSSHYDGSQESLEAFTRHAKTSEGT 335          
BLAST of EWM27241.1 vs. NCBI_GenBank
Match: gi|299471658|emb|CBN76880.1| (chp-1 / RAR1 homologue [Ectocarpus siliculosus])

HSP 1 Score: 301.982 bits (772), Expect = 8.226e-98
Identity = 149/343 (43.44%), Postives = 208/343 (60.64%), Query Frame = 0
Query:    1 MKLYVHYEEAGQDEKALTLKLTLPKSWAEQPLLQVLELFIESYNKKKTGLPPLDKDFVHMEKAGGV-------ILPVGNIVSDMLSDRDDLYIRSGPGPARGKIAHLSSPPNAHASSESS----------------TGLLRCKNYGCNQSFSEENNSEEACRFHKAPPVFHDTKKGWSCCAKRVYDWDEFHTIEGCTTGRHSLIDPKEIFAPSPTLAAAAQAERGDCSNTSSAATVIKSIDEFNQSNPNAAAACKTAASMTQAGTRCTVKPDGSATCLNKGCQKDYLLKENHPSACRYHAAGPVFHDAGKYWSCCPGTVKYDFDDFLKIPGCMLSSHYDGSQE 320
            MK+YVH+EE    E  +TLKLTLPK W ++  +++L+LFI+SYNK+K     LD D  H+E    +        L  G+ +   ++DR D+++R  PG  +  +   ++   A A++ ++                 G LRC+N+GCNQ + E +NS+ ACRFH  PP+FHDT+KGWSCC KRVYDWDEF  ++GC  GRHS +DPK+   P+P  A    A        +  A V+KSID +N  NP AA A  +A     A  +CT +PDG+A+C+N GCQKD+++ EN   +CRYH   PVFHD GK+W CCP  VKY+F+DF+ +PGC +  H D S E
Sbjct:    1 MKVYVHFEEGSDAELHVTLKLTLPKKWNDESPVRLLKLFIDSYNKRKPD-NQLDVDECHLETGASLDQGAEEQALAKGDTIGATITDRADVFVR--PGATKEGMGAAATAAAAAAAAAAAAAAAAASAVTATAPKRAGALRCRNFGCNQYYDEADNSDTACRFHTGPPIFHDTRKGWSCCKKRVYDWDEFEQLQGCQVGRHSTVDPKDRLPPNPPSAEQEVA--------AKPAPVLKSIDNYNAENPEAATAAGSAVKSITAKKKCTRRPDGTASCVNLGCQKDFVVAENQRDSCRYHRLNPVFHDGGKHWGCCPDQVKYEFEDFMAVPGCCIGFHDDASGE 332          
BLAST of EWM27241.1 vs. NCBI_GenBank
Match: gi|570972932|gb|ETP35701.1| (hypothetical protein F442_16203 [Phytophthora parasitica P10297])

HSP 1 Score: 276.944 bits (707), Expect = 3.253e-88
Identity = 143/316 (45.25%), Postives = 194/316 (61.39%), Query Frame = 0
Query:    2 KLYVHYEEAGQDEKALTLKLTLPKSWAEQPLLQVLELFIESYNKKKTGLPPLDKDFVHMEKAGGVILPVGNIVSDMLSDRDDLYIRSGPGPARGKIAHLSSPPNAHASSESSTGLLRCKNYGCNQSFSEENNSEEACRFHKAPPVFHDTKKGWSCCA-KRVYDWDEFHTIEGCTTGRHSLIDPKEIFAPSPTLAAAAQAERGDCSNTSSAATVIKSIDEFNQSNPNAAAACKTAASMTQAGTRCTVKPDGSATCLNKGCQKDYLLKENHPSACRYHAAGPVFHDAGKYWSCCPGTVKYDFDDFLKIPGCMLSSHYD 316
            K+Y+HY+E G + + LTLK+TLP  WA   +  + E F+E YN KK     LD   VH+EK   V+L    ++   +   DDL++++G    +      S+     A++ S    L+CKN+GC + F EE N+++ACR H  PP+FHD KKGW CC+ K VYDWD+F  IE C  GRHS + P E FA SPT+AAA  A     S  +     +KSI+++NQ NPNA  A   A     A      + DG A C+N GCQ++Y++ EN  ++CR+HA  PVFHDA KYWSCCP  VKYDFD FLK+PGC++S+H D
Sbjct:   14 KVYMHYDE-GSEAQTLTLKMTLPSKWAGHTVDYLKEFFVEHYNNKKPD-NVLDATQVHLEKKNNVVLFGDELLHTAVQKYDDLFLKAGASTLKPVRVQKSA-----AAATSDKKYLQCKNHGCQKKFLEEENNDQACRHHSLPPLFHDMKKGWQCCSSKMVYDWDDFEKIEPCIIGRHSELGPNEQFAASPTVAAAENAAANSTSAAAPPTAPLKSIEDYNQKNPNAVTAVSAAKDSQTAPP--PKRTDGKANCVNYGCQQEYVVAENTETSCRHHAGAPVFHDASKYWSCCPKDVKYDFDSFLKVPGCVVSAHTD 320          
BLAST of EWM27241.1 vs. NCBI_GenBank
Match: gi|675205171|ref|XP_008911470.1| (hypothetical protein PPTG_16376 [Phytophthora parasitica INRA-310] >gi|568088494|gb|ETN03354.1| hypothetical protein PPTG_16376 [Phytophthora parasitica INRA-310])

HSP 1 Score: 275.789 bits (704), Expect = 8.461e-88
Identity = 142/316 (44.94%), Postives = 193/316 (61.08%), Query Frame = 0
Query:    2 KLYVHYEEAGQDEKALTLKLTLPKSWAEQPLLQVLELFIESYNKKKTGLPPLDKDFVHMEKAGGVILPVGNIVSDMLSDRDDLYIRSGPGPARGKIAHLSSPPNAHASSESSTGLLRCKNYGCNQSFSEENNSEEACRFHKAPPVFHDTKKGWSCCA-KRVYDWDEFHTIEGCTTGRHSLIDPKEIFAPSPTLAAAAQAERGDCSNTSSAATVIKSIDEFNQSNPNAAAACKTAASMTQAGTRCTVKPDGSATCLNKGCQKDYLLKENHPSACRYHAAGPVFHDAGKYWSCCPGTVKYDFDDFLKIPGCMLSSHYD 316
            K+Y+HY+E G + + LTLK+TLP  WA   +  + E F+E YN KK     LD   VH+EK    +L    ++   +   DDL++++G    +      S+     A++ S    L+CKN+GC + F EE N+++ACR H  PP+FHD KKGW CC+ K VYDWD+F  IE C  GRHS + P E FA SPT+AAA  A     S  +     +KSI+++NQ NPNA  A   A     A      + DG A C+N GCQ++Y++ EN  ++CR+HA  PVFHDA KYWSCCP  VKYDFD FLK+PGC++S+H D
Sbjct:   14 KVYMHYDE-GSEAQTLTLKMTLPSKWAGHTVDYLKEFFVEHYNNKKPD-NVLDATQVHLEKKNNAVLFGDELLHTAVQKYDDLFLKAGASTLKPVRVQKSA-----AAATSDKKYLQCKNHGCQKKFLEEENNDQACRHHSLPPLFHDMKKGWQCCSSKMVYDWDDFEKIEPCIIGRHSKVGPNEQFAASPTVAAAENAAANSTSAAAPPTAPLKSIEDYNQKNPNAVTAVSAAKDSQTAPP--PKRTDGKANCVNYGCQQEYVVAENTETSCRHHAGAPVFHDASKYWSCCPKDVKYDFDSFLKVPGCVVSAHTD 320          
BLAST of EWM27241.1 vs. NCBI_GenBank
Match: gi|568010490|gb|ETL84678.1| (hypothetical protein L917_15595 [Phytophthora parasitica] >gi|570312779|gb|ETO60727.1| hypothetical protein F444_21118 [Phytophthora parasitica P1976] >gi|570942414|gb|ETP07671.1| hypothetical protein F441_16169 [Phytophthora parasitica CJ01A1] >gi|970647794|gb|KUF87512.1| Cysteine and histidine-rich domain-containing protein [Phytophthora nicotianae])

HSP 1 Score: 275.789 bits (704), Expect = 8.646e-88
Identity = 142/316 (44.94%), Postives = 193/316 (61.08%), Query Frame = 0
Query:    2 KLYVHYEEAGQDEKALTLKLTLPKSWAEQPLLQVLELFIESYNKKKTGLPPLDKDFVHMEKAGGVILPVGNIVSDMLSDRDDLYIRSGPGPARGKIAHLSSPPNAHASSESSTGLLRCKNYGCNQSFSEENNSEEACRFHKAPPVFHDTKKGWSCCA-KRVYDWDEFHTIEGCTTGRHSLIDPKEIFAPSPTLAAAAQAERGDCSNTSSAATVIKSIDEFNQSNPNAAAACKTAASMTQAGTRCTVKPDGSATCLNKGCQKDYLLKENHPSACRYHAAGPVFHDAGKYWSCCPGTVKYDFDDFLKIPGCMLSSHYD 316
            K+Y+HY+E G + + LTLK+TLP  WA   +  + E F+E YN KK     LD   VH+EK    +L    ++   +   DDL++++G    +      S+     A++ S    L+CKN+GC + F EE N+++ACR H  PP+FHD KKGW CC+ K VYDWD+F  IE C  GRHS + P E FA SPT+AAA  A     S  +     +KSI+++NQ NPNA  A   A     A      + DG A C+N GCQ++Y++ EN  ++CR+HA  PVFHDA KYWSCCP  VKYDFD FLK+PGC++S+H D
Sbjct:   14 KVYMHYDE-GSEAQTLTLKMTLPSKWAGHTVDYLKEFFVEHYNNKKPD-NVLDATQVHLEKKNNAVLFGDELLHTAVQKYDDLFLKAGASTLKPVRVQKSA-----AAATSDKKYLQCKNHGCQKKFLEEENNDQACRHHSLPPLFHDMKKGWQCCSSKMVYDWDDFEKIEPCIIGRHSEVGPNEQFAASPTVAAAENAAANSTSAAAPPTAPLKSIEDYNQKNPNAVTAVSAAKDSQTAPP--PKRTDGKANCVNYGCQQEYVVAENTETSCRHHAGAPVFHDASKYWSCCPKDVKYDFDSFLKVPGCVVSAHTD 320          
BLAST of EWM27241.1 vs. NCBI_GenBank
Match: gi|567952308|gb|ETK77986.1| (hypothetical protein L915_15901 [Phytophthora parasitica] >gi|567980972|gb|ETL31420.1| hypothetical protein L916_15796 [Phytophthora parasitica])

HSP 1 Score: 275.018 bits (702), Expect = 1.505e-87
Identity = 142/316 (44.94%), Postives = 193/316 (61.08%), Query Frame = 0
Query:    2 KLYVHYEEAGQDEKALTLKLTLPKSWAEQPLLQVLELFIESYNKKKTGLPPLDKDFVHMEKAGGVILPVGNIVSDMLSDRDDLYIRSGPGPARGKIAHLSSPPNAHASSESSTGLLRCKNYGCNQSFSEENNSEEACRFHKAPPVFHDTKKGWSCCA-KRVYDWDEFHTIEGCTTGRHSLIDPKEIFAPSPTLAAAAQAERGDCSNTSSAATVIKSIDEFNQSNPNAAAACKTAASMTQAGTRCTVKPDGSATCLNKGCQKDYLLKENHPSACRYHAAGPVFHDAGKYWSCCPGTVKYDFDDFLKIPGCMLSSHYD 316
            K+Y+HY+E G + + LTLK+TLP  WA   +  + E F+E YN KK     LD   VH+EK    +L    ++   +   DDL++++G    +      S+     A++ S    L+CKN+GC + F EE N+++ACR H  PP+FHD KKGW CC+ K VYDWD+F  IE C  GRHS + P E FA SPT+AAA  A     S  +     +KSI+++NQ NPNA  A   A     A      + DG A C+N GCQ++Y++ EN  ++CR+HA  PVFHDA KYWSCCP  VKYDFD FLK+PGC++S+H D
Sbjct:   14 KVYMHYDE-GSEAQTLTLKMTLPSKWAGHTVDYLKEFFVEHYNNKKPD-NVLDATQVHLEKKNNAVLFGDELLHTAVQKYDDLFLKAGASTLKPVRVQKSA-----AAATSDKKYLQCKNHGCQKKFLEEENNDQACRHHSLPPLFHDMKKGWQCCSSKMVYDWDDFEKIEPCIIGRHSELGPNEQFAASPTVAAAENAAANSTSAAAPPTAPLKSIEDYNQKNPNAVTAVSAAKDSQTAPP--PKRTDGKANCVNYGCQQEYVVAENTETSCRHHAGAPVFHDASKYWSCCPKDVKYDFDSFLKVPGCVVSAHTD 320          
BLAST of EWM27241.1 vs. NCBI_GenBank
Match: gi|301114377|ref|XP_002998958.1| (conserved hypothetical protein [Phytophthora infestans T30-4] >gi|262111052|gb|EEY69104.1| conserved hypothetical protein [Phytophthora infestans T30-4])

HSP 1 Score: 274.248 bits (700), Expect = 3.253e-87
Identity = 147/323 (45.51%), Postives = 199/323 (61.61%), Query Frame = 0
Query:    2 KLYVHYEEAGQDEKALTLKLTLPKSWAEQPLLQVLELFIESYNKKKTGLPPLDKDFVHMEKAGGVILPVGNIVSDMLSDRDDLYIRSGPG---PARGKIAHLSSPPNAHASSESSTGLLRCKNYGCNQSFSEENNSEEACRFHKAPPVFHDTKKGWSCCA-KRVYDWDEFHTIEGCTTGRHSLIDPKEIFAPSPTLAAAAQAERGDCSNTSSAATVIKSIDEFNQSNPNAAAACKTAASMTQAGTRCTVKP----DGSATCLNKGCQKDYLLKENHPSACRYHAAGPVFHDAGKYWSCCPGTVKYDFDDFLKIPGCMLSSHYD 316
            K+Y+HYEE G + + LTLK+TLP  WA   +  + E F+E YN KK     L+   VH+EK    +L    ++   +   DDL++++G     PAR +         +  ++ S     +CKN+GC + F EE N+++ACR H  PP+FHD KKGW CC+ K VYDWD+F  IE C  GRHS + P E FA SPT+AAA  A     S  +  A  +KSI+++NQ NPNA  A  +AA  +Q     TV P    DG A C+N GCQ++Y++ EN  +AC++HA  PVFHDA KYWSCCP  VKYDFD FLK+PGC++S+H D
Sbjct:   14 KVYMHYEE-GNEAQTLTLKMTLPSKWAGHTVDYLKEFFVEHYNNKKPD-NVLEATQVHLEKKNNAVLFGDELLHTAVQKYDDLFLKAGASTLKPARVQ--------KSAVTATSDKKYTQCKNHGCQKKFLEEENNDQACRHHSLPPLFHDMKKGWQCCSSKMVYDWDDFEKIEPCIIGRHSEVGPNEQFAASPTVAAAESAAANSTSAAAPPAAPLKSIEDYNQKNPNAVTAV-SAAKDSQ-----TVPPPKRTDGKANCVNYGCQQEYVVAENAETACKHHAGAPVFHDASKYWSCCPKDVKYDFDSFLKVPGCVVSAHTD 320          
BLAST of EWM27241.1 vs. NCBI_GenBank
Match: gi|953496990|emb|CEG41299.1| (chord family protein [Plasmopara halstedii])

HSP 1 Score: 273.092 bits (697), Expect = 5.975e-87
Identity = 144/316 (45.57%), Postives = 195/316 (61.71%), Query Frame = 0
Query:    5 VHYEEAGQDEKALTLKLTLPKSWAEQPLLQVLELFIESYNKKKTGLPPLDKDFVHMEKAGGVILPVGNIVSDMLSDRDDLYIRSG---PGPARGKIAHLSSPPNAHASSESSTGLLRCKNYGCNQSFSEENNSEEACRFHKAPPVFHDTKKGWSCCA-KRVYDWDEFHTIEGCTTGRHSLIDPKEIFAPSPTLAAAAQAERGDCSNTSSAATVIKSIDEFNQSNPNAAAACKTAASMTQAGTRCTVKPDGSATCLNKGCQKDYLLKENHPSACRYHAAGPVFHDAGKYWSCCPGTVKYDFDDFLKIPGCMLSSHYD 316
            +HYE+ G + + LTLK+ LP  WA   +  + + F+E YN KK     LD   +H+EK G  IL    ++   +   DDL+++ G   P P R +        N+ AS  S     +CKN+GC + + EE NS++ACR H  PP+FHD KKGW CC+ K VYDWD+F  IE C TGRHS + P E FA SPT+AAA  A     S T   A+ +KSI+++NQ NP+A  A   A S   A      + DG A C+N GCQ++Y++ EN  ++C++HA  PVFHDAGK+WSCCP  VKYDFD FLK+PGC++S+H D
Sbjct:    1 MHYED-GTEVQTLTLKMVLPSKWAGHTVDYLKDFFVEHYNTKKPE-NVLDATEMHLEKKGNAILFGDELLHTAVQKYDDLFLKPGKSMPKPVRAQ--------NSAASVTSDAKYKQCKNHGCQKKYLEEENSDQACRHHSLPPLFHDMKKGWQCCSSKMVYDWDDFEKIEPCVTGRHSDVGPNEKFAASPTVAAAENAAANSASATVPPASSLKSIEDYNQKNPDAVTAVSAAKSSQTAPP--PKRTDGKANCVNYGCQQEYVVVENTDTSCKHHAGPPVFHDAGKFWSCCPKDVKYDFDSFLKVPGCVVSAHTD 304          
BLAST of EWM27241.1 vs. NCBI_GenBank
Match: gi|695464667|ref|XP_009539001.1| (hypothetical protein PHYSODRAFT_534209 [Phytophthora sojae] >gi|348665641|gb|EGZ05470.1| hypothetical protein PHYSODRAFT_534209 [Phytophthora sojae])

HSP 1 Score: 273.092 bits (697), Expect = 1.018e-86
Identity = 142/317 (44.79%), Postives = 199/317 (62.78%), Query Frame = 0
Query:    2 KLYVHYEEAGQDEKALTLKLTLPKSWAEQPLLQVLELFIESYNKKKTGLPPLDKDFVHMEKAGGVILPVGN-IVSDMLSDRDDLYIRSGPGPARGKIAHLSSPPNAHASSESSTGLLRCKNYGCNQSFSEENNSEEACRFHKAPPVFHDTKKGWSCCA-KRVYDWDEFHTIEGCTTGRHSLIDPKEIFAPSPTLAAAAQAERGDCSNTSSAATVIKSIDEFNQSNPNAAAACKTAASMTQAGTRCTVKPDGSATCLNKGCQKDYLLKENHPSACRYHAAGPVFHDAGKYWSCCPGTVKYDFDDFLKIPGCMLSSHYD 316
            K+Y+HY+E G + + LTLK+TLP  WA   +  + E F+E YN KK     LD   +H+EK G    P G+ ++   +   DDL++++G    +      S+ P     + S   LL+CKN+GC + F+EE N+++ACR H+ PP+FHD KKGW CC+ K VYDWD+F  IE C  GRHS++ P E FA SPT+AAA  A        +  A  +KSI+++NQ NP+A  A   +A+          + DG A C+N GCQ++Y++ +N  S+CR+HA  PVFHDA KYWSCCP  VKYDFD FLK+PGC++S+H D
Sbjct:   14 KVYMHYDE-GSEAQTLTLKMTLPSKWAGHTVDYLKEFFVEHYNNKKPD-NTLDAAQMHLEKKGNNA-PFGDELLHTAVQKYDDLFLKAGASTLKPVKVQKSAAP-----ATSDKKLLQCKNHGCQKKFAEEENNDQACRHHRLPPLFHDMKKGWQCCSSKMVYDWDDFEKIEPCVVGRHSVVGPNEQFAASPTVAAAENAANSA-GAAAPPAAPLKSIEDYNQKNPDAVTA--VSAAKENQTVPAPKRTDGKANCVNFGCQQEYVVADNTDSSCRHHAGAPVFHDASKYWSCCPKDVKYDFDSFLKVPGCVVSAHSD 319          
BLAST of EWM27241.1 vs. NCBI_GenBank
Match: gi|970650406|gb|KUF89444.1| (U3 small nucleolar ribonucleoprotein IMP3 [Phytophthora nicotianae])

HSP 1 Score: 273.092 bits (697), Expect = 1.110e-86
Identity = 141/316 (44.62%), Postives = 191/316 (60.44%), Query Frame = 0
Query:    2 KLYVHYEEAGQDEKALTLKLTLPKSWAEQPLLQVLELFIESYNKKKTGLPPLDKDFVHMEKAGGVILPVGNIVSDMLSDRDDLYIRSGPGPARGKIAHLSSPPNAHASSESSTGLLRCKNYGCNQSFSEENNSEEACRFHKAPPVFHDTKKGWSCCA-KRVYDWDEFHTIEGCTTGRHSLIDPKEIFAPSPTLAAAAQAERGDCSNTSSAATVIKSIDEFNQSNPNAAAACKTAASMTQAGTRCTVKPDGSATCLNKGCQKDYLLKENHPSACRYHAAGPVFHDAGKYWSCCPGTVKYDFDDFLKIPGCMLSSHYD 316
            K+Y+HY+E G + + LTLK+TLP  WA   +  + E F+E YN KK     LD   VH+EK    +L    ++   +   DDL++++G    +         P    ++ S    L+CKN+GC + F EE N+++ACR H  PP+FHD KKGW CC+ K VYDWD+F  IE C  GRHS + P E FA SPT+AAA  A     S  +     +KSI+++NQ NPNA  A   A     A      + DG A C+N GCQ++Y++ EN  ++CR+HA  PVFHDA KYWSCCP  VKYDFD FLK+PGC++S+H D
Sbjct:   29 KVYMHYDE-GSEAQTLTLKMTLPSKWAGHTVDYLKEFFVEHYNNKKPD-NVLDATQVHLEKKNNAVLFGDELLHTAVQKYDDLFLKAGASTLK---------PVRVQTATSDKKYLQCKNHGCQKKFLEEENNDQACRHHSLPPLFHDMKKGWQCCSSKMVYDWDDFEKIEPCIIGRHSEVGPNEQFAASPTVAAAENAAANSTSAAAPPTAPLKSIEDYNQKNPNAVTAVSAAKDSQTAPP--PKRTDGKANCVNYGCQQEYVVAENTETSCRHHAGAPVFHDASKYWSCCPKDVKYDFDSFLKVPGCVVSAHTD 331          
The following BLAST results are available for this feature:
BLAST of EWM27241.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585109422|gb|EWM27241.1|0.000e+0100.00chord family protein [Nannochloropsis gaditana][more]
gi|299471658|emb|CBN76880.1|8.226e-9843.44chp-1 / RAR1 homologue [Ectocarpus siliculosus][more]
gi|570972932|gb|ETP35701.1|3.253e-8845.25hypothetical protein F442_16203 [Phytophthora para... [more]
gi|675205171|ref|XP_008911470.1|8.461e-8844.94hypothetical protein PPTG_16376 [Phytophthora para... [more]
gi|568010490|gb|ETL84678.1|8.646e-8844.94hypothetical protein L917_15595 [Phytophthora para... [more]
gi|567952308|gb|ETK77986.1|1.505e-8744.94hypothetical protein L915_15901 [Phytophthora para... [more]
gi|301114377|ref|XP_002998958.1|3.253e-8745.51conserved hypothetical protein [Phytophthora infes... [more]
gi|953496990|emb|CEG41299.1|5.975e-8745.57chord family protein [Plasmopara halstedii][more]
gi|695464667|ref|XP_009539001.1|1.018e-8644.79hypothetical protein PHYSODRAFT_534209 [Phytophtho... [more]
gi|970650406|gb|KUF89444.1|1.110e-8644.62U3 small nucleolar ribonucleoprotein IMP3 [Phytoph... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna3429rna3429Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications