rna3426, rna3426 (mRNA) Nannochloropsis gaditana

Overview
Namerna3426
Unique Namerna3426
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length549
Alignment locationCM002461.1:389274..391035 -

Link to JBrowse

Properties
Property NameValue
ProductUPF0103/Mediator of ErbB2-driven cell motility
Orig transcript idgnl|cribi|Naga_100038g23.7724.mrna
Orig protein idgnl|cribi|Naga_100038g23.7724
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002461.1supercontigCM002461.1:389274..391035 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100038g23gene3300Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna3426rna3426-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM27269.1cds3417Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna3426 ID=rna3426|Name=rna3426|organism=Nannochloropsis gaditana|type=mRNA|length=549bp
ATGTCAAAACGTGAGAAGGAATGCTTGGACTGCGAAATTTGTGAGGGTGG
AGCCAAATTAGGATCTGCAAAAGGAAAGCGCAGAAGAAGTATGGGGAAAC
ATGCTAAGTCTAATGATGTTCACGACCTTCAAAGATCCTCCTCCTCCACC
TCTCACAGGCAACTGCCCAAAACGCTCACCGAGACGCCGGACGCAGACAT
TGACATGTCTTTCAGTGCTCACGATATACAGCAGCAGCAGCAGCCGCGGC
CGCATCCGAACTTCAAGGACGAGCAGACACAGGAGGCCGCACTCTTGGAG
CAAGATTGTGCGGCAAGCTTCCACAAGGCCGTGGGCATGGCCTTTTCCCA
CATGTTCGACGCCGCCATCCATGTCGTGGTGAGAGCTGAGACCCACGTCA
AGGAGCAGTTGGAGTCGATTGACCGCTTGGTGGAGTCGGCAGAGGAGGGG
AAGAGAAAGGTTGATGCTGAGCTGGAGACGATGCTGCGCGTCTTGGAAGA
GAATAAGAGAGCGATACATGTCATATACAGCGCGCAGCGCGCGTGTTGA
back to top

protein sequence of rna3426

>rna3426-protein ID=rna3426-protein|Name=rna3426|organism=Nannochloropsis gaditana|type=polypeptide|length=323bp
MGKDGYIRKASHSGSWYTKSGEVLRKQLSEWLLEASSASSSTPSQRCVKA
LIAPHAGYSYSGPTAAHAYMHLDPSVIQRVFILGPSHHVYLRACAVSGAS
VCETPVGPLSVDEAVRAELLADPLFQTMAQRVDEDEHSIEMHLPYVAHLV
GEVQGVSIVPILVGSLDPTQEAVYGRILAKYLSDPANLFIVSTDFCHWGR
RFQYQPFDRAYGEDIHEYIEWLDRQGMALIEQGDPQAFTTYLRQYRNTIC
GRHPLGVFLQAAQALREGGKEGLDVRVEFVRYAQSSRCMHETDSSVSYAS
AVATTLMAGNDARGNGGAKPFMT
back to top

mRNA from alignment at CM002461.1:389274..391035-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna3426 ID=rna3426|Name=rna3426|organism=Nannochloropsis gaditana|type=mRNA|length=1762bp|location=Sequence derived from alignment at CM002461.1:389274..391035- (Nannochloropsis gaditana)
GTCGTCACTGTTTTACATAATATTCGATGACCAGATATATATGAGGCGCA
GAAGGCGTGAAAAAGAGTGTGCAGGCATTTCGGCAGACTGCCTGACAGGG
GATGATAGAAGGCGAAGACAATCGACAGGTCCTGTGCAATGACCGCTTCA
TGCTTCCCGCACAACACGGTTGAATGACTTCATACGTCAGCGTGAGCATT
CCAAACATCACGGCTTGAGTGGCCAACCAGCAATCTATTGATCGGATTTC
TGAAGCTTTAACAAAGTACCATGAAAGCGAACCTCCTGGTACCACATTCT
AACCTGTCGTCTACTTTGACACCCACAGCTGTGTCGATCCTAGTGAAATG
GGGAAGGATGGCTATATCCGTAAAGCCAGCCACAGTGGTAGCTGGTACAC
CAAGTCAGGCGAAGTGCTGAGAAAGCAATTGAGTGAATGGTTGCTTGAGG
CCTCTTCAGCTTCCTCATCCACCCCGAGCCAGCGCTGTGTCAAGGCCCTG
ATAGCTCCGCACGCCGGCTACAGCTACTCCGGCCCGACTGCAGCTCATGC
GTACATGCACCTGGACCCCTCCGTGATCCAACGGGTATTCATTTTGGGTC
CCTCCCATCACGTGTACCTCCGAGCCTGCGCTGTGTCCGGCGCCTCAGTG
TGCGAGACCCCGGTCGGCCCCCTGAGCGTGGACGAGGCCGTCCGCGCCGA
GCTCTTAGCCGACCCCCTCTTCCAGACCATGGCACAACGGGTGGACGAGG
ATGAGCACTCTATCGAGATGCACCTACCCTACGTGGCACACCTGGTCGGA
GAGGTGCAGGGCGTCTCTATCGTTCCCATACTGGTGGGATCCTTAGATCC
CACGCAGGAGGCTGTGTACGGGAGGTAAGGAAATTTTTGGGGTAGAGCCG
TGAGCTCTGTTTCGGTGTAGTTGGAGAGATGGATGCATCTTGGTTTGGAT
GCAAGAATCTAGGGGATCTCTCGGCTCTCTTCGTCTCTTACTATCCATGT
GATGTTCCGTGGTCGCAGGGGTTCGGTCGACGAGGGAAGATCTTGTGAAC
CCAACGCACTCCAACAAACGCACATGATATGCATCCTTTCTTTCCCTCAT
TGACCGCAGGATTCTCGCCAAGTACCTCTCCGACCCCGCGAACCTCTTCA
TTGTCAGCACCGACTTTTGCCACTGGGGCCGCCGCTTTCAATACCAGCCC
TTCGACCGCGCGTACGGCGAGGACATCCACGAGTACATCGAGTGGCTGGA
CAGACAGGGCATGGCACTCATCGAACAAGGCGATCCCCAGGCCTTCACCA
CCTACCTTCGACAGTACAGGAACACGATTTGCGGCCGCCATCCGCTTGGC
GTGTTTCTACAGGCGGCGCAGGCCTTGAGGGAGGGAGGAAAGGAGGGTCT
GGACGTGCGAGTAGAATTTGTCAGGTATGCTCAGAGCAGCCGGTGTATGC
ATGAGACAGACTCCTCTGTGAGCTATGCGAGCGCGGTGGCCACAACATTG
ATGGCGGGCAACGATGCCAGGGGAAACGGTGGCGCCAAGCCTTTTATGAC
GTAGGCGCAGACTAAGTAGGATGGAACGGAAGTGAGGGAGAGACAAGGTC
TGAAATTGCTTTCCTGTGCATGTATATAGAAGTATCAAGATCAATGAGGC
AGAATGTGAATATAGCTGCGATAAATAGAGATGATTATATAGCAATCTCG
TGGTGACGTAAAGATAAAATAAAAAGGGATAGGCACTGACTGGCCTTTGT
CCCATTCACATC
back to top

Coding sequence (CDS) from alignment at CM002461.1:389274..391035-

>rna3426 ID=rna3426|Name=rna3426|organism=Nannochloropsis gaditana|type=CDS|length=1944bp|location=Sequence derived from alignment at CM002461.1:389274..391035- (Nannochloropsis gaditana)
GATTCTCGCCAAGTACCTCTCCGACCCCGCGAACCTCTTCATTGTCAGCA
CCGACTTTTGCCACTGGGGCCGCCGCTTTCAATACCAGCCCTTCGACCGC
GCGTACGGCGAGGACATCCACGAGTACATCGAGTGGCTGGACAGACAGGG
CATGGCACTCATCGAACAAGGCGATCCCCAGGCCTTCACCACCTACCTTC
GACAGTACAGGAACACGATTTGCGGCCGCCATCCGCTTGGCGTGTTTCTA
CAGGCGGCGCAGGCCTTGAGGGAGGGAGGAAAGGAGGGTCTGGACGTGCG
AGTAGAATTTGTCAGGTATGCTCAGAGCAGCCGGTGTATGCATGAGACAG
ACTCCTCTGTGAGCTATGCGAGCGCGGTGGCCACAACATTGATGGCGGGC
AACGATGCCAGGGGAAACGGTGGCGCCAAGCCTTTTATGACGTAGATGGG
GAAGGATGGCTATATCCGTAAAGCCAGCCACAGTGGTAGCTGGTACACCA
AGTCAGGCGAAGTGCTGAGAAAGCAATTGAGTGAATGGTTGCTTGAGGCC
TCTTCAGCTTCCTCATCCACCCCGAGCCAGCGCTGTGTCAAGGCCCTGAT
AGCTCCGCACGCCGGCTACAGCTACTCCGGCCCGACTGCAGCTCATGCGT
ACATGCACCTGGACCCCTCCGTGATCCAACGGGTATTCATTTTGGGTCCC
TCCCATCACGTGTACCTCCGAGCCTGCGCTGTGTCCGGCGCCTCAGTGTG
CGAGACCCCGGTCGGCCCCCTGAGCGTGGACGAGGCCGTCCGCGCCGAGC
TCTTAGCCGACCCCCTCTTCCAGACCATGGCACAACGGGTGGACGAGGAT
GAGCACTCTATCGAGATGCACCTACCCTACGTGGCACACCTGGTCGGAGA
GGTGCAGGGCGTCTCTATCGTTCCCATACTGGTGGGATCCTTAGATCCCA
CGCAGGAGGCTGTGTACGGGAGGATTCTCGCCAAGTACCTCTCCGACCCC
GCGAACCTCTTCATTGTCAGCACCGACTTTTGCCACTGGGGCCGCCGCTT
TCAATACCAGCCCTTCGACCGCGCGTACGGCGAGGACATCCACGAGTACA
TCGAGTGGCTGGACAGACAGGGCATGGCACTCATCGAACAAGGCGATCCC
CAGGCCTTCACCACCTACCTTCGACAGTACAGGAACACGATTTGCGGCCG
CCATCCGCTTGGCGTGTTTCTACAGGCGGCGCAGGCCTTGAGGGAGGGAG
GAAAGGAGGGTCTGGACGTGCGAGTAGAATTTGTCAGGTATGCTCAGAGC
AGCCGGTGTATGCATGAGACAGACTCCTCTGTGAGCTATGCGAGCGCGGT
GGCCACAACATTGATGGCGGGCAACGATGCCAGGGGAAACGGTGGCGCCA
AGCCTTTTATGACGTAGATGGGGAAGGATGGCTATATCCGTAAAGCCAGC
CACAGTGGTAGCTGGTACACCAAGTCAGGCGAAGTGCTGAGAAAGCAATT
GAGTGAATGGTTGCTTGAGGCCTCTTCAGCTTCCTCATCCACCCCGAGCC
AGCGCTGTGTCAAGGCCCTGATAGCTCCGCACGCCGGCTACAGCTACTCC
GGCCCGACTGCAGCTCATGCGTACATGCACCTGGACCCCTCCGTGATCCA
ACGGGTATTCATTTTGGGTCCCTCCCATCACGTGTACCTCCGAGCCTGCG
CTGTGTCCGGCGCCTCAGTGTGCGAGACCCCGGTCGGCCCCCTGAGCGTG
GACGAGGCCGTCCGCGCCGAGCTCTTAGCCGACCCCCTCTTCCAGACCAT
GGCACAACGGGTGGACGAGGATGAGCACTCTATCGAGATGCACCTACCCT
ACGTGGCACACCTGGTCGGAGAGGTGCAGGGCGTCTCTATCGTTCCCATA
CTGGTGGGATCCTTAGATCCCACGCAGGAGGCTGTGTACGGGAG
back to top
Synonyms
Publications