rna3425, rna3425 (mRNA) Nannochloropsis gaditana

Overview
Namerna3425
Unique Namerna3425
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1257
Alignment locationCM002461.1:388327..388942 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100038g21.7708.mrna
Orig protein idgnl|cribi|Naga_100038g21.7708
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002461.1supercontigCM002461.1:388327..388942 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100038g21gene3299Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna3425rna3425-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM27253.1cds3416Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna3425 ID=rna3425|Name=rna3425|organism=Nannochloropsis gaditana|type=mRNA|length=1257bp
ATGGGCGGATGGATCAGTCGTTGTTTGGGGGCAAGTCGGTGTACAATTCT
CTTCCCTCTCATCCTCCTGATCGCGTTCCAGGCGGTTGAAGTGGCGCTTC
AAGCACATACCGATGCAGCGACCTGTGTCGCCGAGGGGCTGAGACCAAGA
TCCTTAGAGAATGACCAAAGCGAGCAGAAATCCAGAGAGAAAATGGAAAA
TTGCGGATGTCAGATCCCACCTCGAGGCATCGGTGAGGGCCAGAAGGAAG
AAGAGATGGAAGAGGATGGGAACGCGGCAGCATCAGCGCCAGTAGAAGAC
GATGCGGATGAAATGGTGTATGTTGAAGGCGGGACCTTCTACATGGGCAC
AGATCAGCCCATCCTCCCTCGGGATGGGGAAGGTCCGCGGCGTTTGGTCC
GTCTATCGTCCTTCTACATCGATCGCCATGCGGTAACGAACGAGGCATTT
GGGCGTTTCGTGGAATCTACAGGATACCAGACTGAGAATGAGGTGTTTGG
TTGGTCTTTCGTCTTCGACAAACTGCTCCCTCAGGAGGTGCTCACCACTA
TCAGCCAGGCCGTGGCCGGGGCAGAATGGTGGGTGCCACTGGGGAACGTG
ACATGGCGGCAACCCGAGGGCCCGGGCTCCGATGTTTTTCGTACCCGCGC
ACGTCACCCGGTCGTGCAGGTGACTTGGAACGACGCCAAGGCCTACTGTG
CTTGGGCGGGGGGCAGGTGGAGGGAGGGGGTCGATGGAGATGGGATGACG
GTGGGGAAACGGCTTCCCACCGAGGCGGAATGGGAATATGCGGCCGGGGG
AGGGAAAAGAGGAAGGGAAGGAGGGCGGGCACTTTTCCCCTGGGGAAATA
CGCTACAGCCAGGAGGAAGTCATCGAATGAATATTTGGCAGGGCGACTTC
CCGCACTCGAACACGGGCGAGGACGGGTGGCTGGCGACGAATCCCGTCGG
CGCCTACGGGCCTCAGAACGTCCTTGGGATGTACGACGTGCTCGGGAACG
TGTGGGAGTGGGTGGAGGACACGTGGGCGGTGGAGTTCTCGACCGGGGCG
GAAGGGGGTGGCGGGGAGGGGGAGGACGAGGCCGTGGTGGTGAACCCTCT
TCAAGGTCCAAGGGATGGGCCGGAGAAAACGAAAAAGGGGGGTTCGTACC
TGTGTCACAAGTCGTACTGCTACCGGTACAGGACAGCAGCCCGCCACCAT
GCCACGGCGGACTCAGCGACGAGTAACAATGGGTTCCGATGTGCGGTGTC
CGCCTAG
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protein sequence of rna3425

>rna3425-protein ID=rna3425-protein|Name=rna3425|organism=Nannochloropsis gaditana|type=polypeptide|length=182bp
MSKREKECLDCEICEGGAKLGSAKGKRRRSMGKHAKSNDVHDLQRSSSST
SHRQLPKTLTETPDADIDMSFSAHDIQQQQQPRPHPNFKDEQTQEAALLE
QDCAASFHKAVGMAFSHMFDAAIHVVVRAETHVKEQLESIDRLVESAEEG
KRKVDAELETMLRVLEENKRAIHVIYSAQRAC
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mRNA from alignment at CM002461.1:388327..388942+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna3425 ID=rna3425|Name=rna3425|organism=Nannochloropsis gaditana|type=mRNA|length=616bp|location=Sequence derived from alignment at CM002461.1:388327..388942+ (Nannochloropsis gaditana)
ATGTCAAAACGTGAGAAGGAATGCTTGGACTGCGAAATTTGTGAGGGTGG
AGCCAAATTAGGATCTGCAAAAGGAAAGCGCAGAAGAAGTATGGGGAAAC
ATGCTGTGGTTTAATGAGATCATCTTGAAAGAGATCGCTGCCCGGTGAAG
CACATGAGTCAGTTGCTTTCAGAAGTCTAATGATGTTCACGACCTTCAaa
gatcctcctcctccacctctcacAGGCAACTGCCCAAAACGCTCACCGAG
ACGCCGGACGCAGACATTGACATGTCTTTCAGTGCTCACGATatacagca
gcagcagcagccgcggccGCATCCGAACTTCAAGGACGAGCAGACACAGG
AGGCCGCACTCTTGGAGCAAGATTGTGCGGCAAGCTTCCACAAGGCCGTG
GGCATGGCCTTTTCCCACATGTTCGACGCCGCCATCCATGTCGTGGTGAG
AGCTGAGACCCACGTCAAGGAGCAGTTGGAGTCGATTGACCGCTTGGTGG
AGtcggcagaggaggggaagagaaaggttGATGCTGAGCTGGAGACGATG
CTGCGCGTCTTGGAAGAGAATAAGAGAGCGATACATGTCATATACAGCGC
GCAGCGCGCGTGTTGA
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Coding sequence (CDS) from alignment at CM002461.1:388327..388942+

>rna3425 ID=rna3425|Name=rna3425|organism=Nannochloropsis gaditana|type=CDS|length=1098bp|location=Sequence derived from alignment at CM002461.1:388327..388942+ (Nannochloropsis gaditana)
ATGTCAAAACGTGAGAAGGAATGCTTGGACTGCGAAATTTGTGAGGGTGG
AGCCAAATTAGGATCTGCAAAAGGAAAGCGCAGAAGAAGTATGGGGAAAC
ATGCTAAGTCTAATGATGTTCACGACCTTCAaagatcctcctcctccacc
tctcacAGGCAACTGCCCAAAACGCTCACCGAGACGCCGGACGCAGACAT
TGACATGTCTTTCAGTGCTCACGATatacagcagcagcagcagccgcggc
cGCATCCGAACTTCAAGGACGAGCAGACACAGGAGGCCGCACTCTTGGAG
CAAGATTGTGCGGCAAGCTTCCACAAGGCCGTGGGCATGGCCTTTTCCCA
CATGTTCGACGCCGCCATCCATGTCGTGGTGAGAGCTGAGACCCACGTCA
AGGAGCAGTTGGAGTCGATTGACCGCTTGGTGGAGtcggcagaggagggg
aagagaaaggttGATGCTGAGCTGGAGACGATGCTGCGCGTCTTGGAAGA
GAATAAGAGAGCGATACATGTCATATACAGCGCGCAGCGCGCGTGTTGAA
TGTCAAAACGTGAGAAGGAATGCTTGGACTGCGAAATTTGTGAGGGTGGA
GCCAAATTAGGATCTGCAAAAGGAAAGCGCAGAAGAAGTATGGGGAAACA
TGCTAAGTCTAATGATGTTCACGACCTTCAaagatcctcctcctccacct
ctcacAGGCAACTGCCCAAAACGCTCACCGAGACGCCGGACGCAGACATT
GACATGTCTTTCAGTGCTCACGATatacagcagcagcagcagccgcggcc
GCATCCGAACTTCAAGGACGAGCAGACACAGGAGGCCGCACTCTTGGAGC
AAGATTGTGCGGCAAGCTTCCACAAGGCCGTGGGCATGGCCTTTTCCCAC
ATGTTCGACGCCGCCATCCATGTCGTGGTGAGAGCTGAGACCCACGTCAA
GGAGCAGTTGGAGTCGATTGACCGCTTGGTGGAGtcggcagaggagggga
agagaaaggttGATGCTGAGCTGGAGACGATGCTGCGCGTCTTGGAAGAG
AATAAGAGAGCGATACATGTCATATACAGCGCGCAGCGCGCGTGTTGA
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Synonyms
Publications