EWM27253.1, cds3416 (CDS) Nannochloropsis gaditana

Overview
NameEWM27253.1
Unique Namecds3416
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002461.1:388327..388431 +
Alignment locationCM002461.1:388499..388942 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM27253.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100038g21.7708.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002461.1supercontigCM002461.1:388327..388431 +
CM002461.1supercontigCM002461.1:388499..388942 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
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BLAST of EWM27253.1 vs. NCBI_GenBank
Match: gi|585109434|gb|EWM27253.1| (hypothetical protein Naga_100038g21 [Nannochloropsis gaditana])

HSP 1 Score: 375.941 bits (964), Expect = 6.589e-132
Identity = 182/182 (100.00%), Postives = 182/182 (100.00%), Query Frame = 0 
Query:    1 MSKREKECLDCEICEGGAKLGSAKGKRRRSMGKHAKSNDVHDLQRSSSSTSHRQLPKTLTETPDADIDMSFSAHDIQQQQQPRPHPNFKDEQTQEAALLEQDCAASFHKAVGMAFSHMFDAAIHVVVRAETHVKEQLESIDRLVESAEEGKRKVDAELETMLRVLEENKRAIHVIYSAQRAC 182
            MSKREKECLDCEICEGGAKLGSAKGKRRRSMGKHAKSNDVHDLQRSSSSTSHRQLPKTLTETPDADIDMSFSAHDIQQQQQPRPHPNFKDEQTQEAALLEQDCAASFHKAVGMAFSHMFDAAIHVVVRAETHVKEQLESIDRLVESAEEGKRKVDAELETMLRVLEENKRAIHVIYSAQRAC
Sbjct:    1 MSKREKECLDCEICEGGAKLGSAKGKRRRSMGKHAKSNDVHDLQRSSSSTSHRQLPKTLTETPDADIDMSFSAHDIQQQQQPRPHPNFKDEQTQEAALLEQDCAASFHKAVGMAFSHMFDAAIHVVVRAETHVKEQLESIDRLVESAEEGKRKVDAELETMLRVLEENKRAIHVIYSAQRAC 182
The following BLAST results are available for this feature:
BLAST of EWM27253.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 1
Match NameE-valueIdentityDescription
gi|585109434|gb|EWM27253.1|6.589e-132100.00hypothetical protein Naga_100038g21 [Nannochlorops... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna3425rna3425Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications