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Properties
| Property Name | Value |
|---|
| Product | ubiquitin-conjugating enzyme e2 j1 |
| Orig transcript id | gnl|cribi|Naga_100038g12.7715.mrna |
| Orig protein id | gnl|cribi|Naga_100038g12.7715 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002461.1 | supercontig | CM002461.1:378011..379186 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna3419 ID=rna3419|Name=rna3419|organism=Nannochloropsis gaditana|type=mRNA|length=1657bp
CATGATGCATGCTTTCGTCCGTCTCTTGAACTTTCCTCCATAGGCTGCCG
ACCGATCGAGGCCTTCGCTAGCCTCCCCTCCCTAAGGAGGAAGTACGCCG
TGGCCGCAAGTCCCCACGTGCGCAAAAGATGCGTGAAGTCCAGGCAGTGC
TCTTCGACATGGACGGGATCCTGGCGGACGTAGCGCAGTCCTACCGGGCA
GCTATTGTGGAAACAGCCGCCTTCTACCAGGTAACGGTGACACAGGATGA
TATCGCGAGGCAAAAGGCCAAAGGGGATGCCAACAACGACTGGGTCCTGA
CGCAACGCCTGCTGGCCAGTCACCAGGTAGACGTGAGCCTCGAAGAGGTG
ACGGCCAAGTTCGAGGAATTGTACCAGGGCACAAGCACGAGTGAGGGTCT
GTGGACGAAGGAGAGACTGATCGTGCCCACGGGCCTTTTGGCCGAGATCG
CACGTCGATGCCCCCTGGGCATGGCGGTGGTGACCGGGCGGCCGCGCAAG
GACTGCGAGAAATTCTTGAAGACGCACGGCCTGGTGCATTTCTTTCGTGC
CTGCGTCTGCATGGAGGACGGGCCTCCCAAGCCGGACCCCTTCCCCGTGC
GACAGGCCTGCGCCGTGCTGGGGGTGGACCCGGGCGACACCCTCATGGTG
GGAGATACCGTCGACGACGTCCGAGCCGCCCTGGCGGCGGGCTCCGTGCC
CATTGCCGTGCTCACCCCGGAAGAGGAGGCCCGGCTCACGTTGATCAGGA
CCGGGGGCGACACGAACGGGGGCCACGGGATAGGCTCGCATTTGGTCGCG
GCGGGCGCCAAGACGGTGCTACGGCCGGGACTGGCCGAGCTCCTCAACTG
GGTCCCCACCATGAGCTCCGGGGCCGATAGCATGGTGGTCGGGGCAGGGA
AAAGGCGAAAGGCCTCTGGCGGCTGCGGCGTACCGGGGCCCACGCGGGCA
GCCACCGTGTCCCGCAAGACGAAAGAGACGGCGATTTCCGCCTCCATCGA
CCTGGACGGGGACGGGAACAACGTGGAGGTACACTCGGGCATTGGCTTCC
TCGACCACATGCTGACGGCCTTGGGAAAGCATGCCCGTTTCCACCTCCGC
CTGAGCTGTCAGGGGGACCTGGAGGTGGACGACCACCACACGGCTGAGGA
CTGCGCGTTGGCGCTCGGGGAGGCCTTCGACCAGGCACTGGGCGTACGGA
AAGGGATCGCGCGTTTCGGCTCGGCCCTTTGCCCATTGGACGAGGCGCTG
GCGCGGAGCGTGGTGGACATCTCGAGCCGGCCCCATGCGGAGGTGCACTT
GAAGCTTCAGCGGGAGAAGGTGGGGCAGCTCTCCTGCGAGATGATTACAC
ACGTGCTCCAGTCCTTCGCCACAGCCGCCCGCCTCACCCTGCACGTAGAC
GTGCTCCGTGGCGCCAACGACCATCACAAGGCAGAGAGCGCCTTCAAAGC
GACCGCCCTCGCCCTGCGCCAGGCCGTGGCTCGGGACGACTCAGCCTTTG
TGCCCAGCACCAAGGGGGGTTTTTGTAGGGAGCGGGCGGGGGGGATGTGA
AGGAGGAAGGGCGGCTGCGGGGTAGCTTGGGTCGGGTTCTTGCACAACAG
TCATCACAGAGTTTTGTGTGGTGAACAAAGTCATTAAGCATTCTGAGATC
GCTTGGG back to topprotein sequence of rna3419 >rna3419-protein ID=rna3419-protein|Name=rna3419|organism=Nannochloropsis gaditana|type=polypeptide|length=297bp
MWWRGSAALLSPPSLLSLLLLLLLFHRPSYALHIPNKGGKKSPPGLPRSF
ALSYRRLIKEWRGIMAEGLVLMDSGEGNCSLSNNTEHIRLAPCRGNLHEW
HFSVAGPPGSVYEGGIYHGRVILPANYPQTAPRLQMLNPSGRFEVGADIC
LSATSFHQETWQPVWTVRTLVSALRSHMATPAVEVGGMECSARRRKFLAR
RSRGFLCRGCGVDHSNFPGRVFRSLPEVGEVSRVPGRGETRGRGNRGGRE
TGVGVADRAAFSGLARLVAVLRRHKVSVLLCLVFWMCFLVLNASSAL back to topmRNA from alignment at CM002461.1:378011..379186+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna3419 ID=rna3419|Name=rna3419|organism=Nannochloropsis gaditana|type=mRNA|length=1176bp|location=Sequence derived from alignment at CM002461.1:378011..379186+ (Nannochloropsis gaditana)
CATCAGACAGGCATGCGGTGTCCAAAATAGTACTGTACAGGTTCCCGGCG
GACTATCGGCCTCACAAAGAtgtggtggcgggggagtgCTGCACTTCTTa
gtccgccctccctcctctctctcctcctcctcctcctcctctttcatcgG
CCATCCTATGCGCTTCACATACCGAacaaaggggggaagaagagtccACC
TGGCCTCCCGCGGTCTTTCGCCCTGTCATACAGGCGTCTAAtaaaggaat
ggaggggtaTCATGGCTGAGGGTTTGGTGCTTATGGACTCCGGCGAAGGC
AATTGCTCTCTCAGCAACAACACGGAGCATATACGGCTGGCACCCTGTCG
AGGCAATCTGCATGAATGGCATTTCTCGGTGGCTGGGCCTCCGGGCAGCG
TGTATGAGGGGGGCATCTACCACGGACGCGTCATTCTGCCTGCCAACTAC
CCACAAACTGCACCGCGCTTGCAAATGCTGAACCCAAGCGGGCGCTTCGA
GGTAGGCGCCGACATTTGTCTCTCTGCCACATCCTTCCATCAAGAAACCT
GGCAGCCTGTGTGGACGGTCCGAACCTTGGTGAGCGCGCTGCGAAGCCAC
ATGGCGACACCGGCGgtagaggtgggagggatggagtgCTCGGCGCGGCG
CCGGAAGTTCCTTGCGCGGCGGTCCCGGGGATTTCTGTGCCGGGGTTGTG
GTGTGGACCATTCAAATTTCCCAGGACGCGTTTTCAGGAGCTTGCCGGAG
GTGGGAGAAGTGTCGCGGGtccccgggcggggggaaacacgaggaagggg
gaatcgaggcgggcgggagacAGGAGTGGGAGTCGCCGACCGGGCCGCTT
TCTCGGGGCTCGCACGGCTGGTTGCTGTATTGCGCAGACACAAGGTGTCC
GTGCTGCTCTGTTTGGTATTCTGGATGTGTTTCCTTGTGCTGAATGCCTC
CTCTGCGCTGTGACGTGAAGGGAAGTGGCccatcctgcctccctcatctc
tGTTCCTTGATTTCTCTAATTTGTGTCCACGCGTACACTCTCTCAAATGC
GGCGCAACGCACATTCAGTCCTTACCGGTAGGAGTGAGGGGATAGCACCA
TGTAAAGTAATGTGCGCCGAGTTTCCCAACGGAGGTCCGACCAGCCCGGT
CGCGAGCGCGGGACTCTTTCTATGTC back to topCoding sequence (CDS) from alignment at CM002461.1:378011..379186+ >rna3419 ID=rna3419|Name=rna3419|organism=Nannochloropsis gaditana|type=CDS|length=894bp|location=Sequence derived from alignment at CM002461.1:378011..379186+ (Nannochloropsis gaditana)
AtgtggtggcgggggagtgCTGCACTTCTTagtccgccctccctcctctc
tctcctcctcctcctcctcctctttcatcgGCCATCCTATGCGCTTCACA
TACCGAacaaaggggggaagaagagtccACCTGGCCTCCCGCGGTCTTTC
GCCCTGTCATACAGGCGTCTAAtaaaggaatggaggggtaTCATGGCTGA
GGGTTTGGTGCTTATGGACTCCGGCGAAGGCAATTGCTCTCTCAGCAACA
ACACGGAGCATATACGGCTGGCACCCTGTCGAGGCAATCTGCATGAATGG
CATTTCTCGGTGGCTGGGCCTCCGGGCAGCGTGTATGAGGGGGGCATCTA
CCACGGACGCGTCATTCTGCCTGCCAACTACCCACAAACTGCACCGCGCT
TGCAAATGCTGAACCCAAGCGGGCGCTTCGAGGTAGGCGCCGACATTTGT
CTCTCTGCCACATCCTTCCATCAAGAAACCTGGCAGCCTGTGTGGACGGT
CCGAACCTTGGTGAGCGCGCTGCGAAGCCACATGGCGACACCGGCGgtag
aggtgggagggatggagtgCTCGGCGCGGCGCCGGAAGTTCCTTGCGCGG
CGGTCCCGGGGATTTCTGTGCCGGGGTTGTGGTGTGGACCATTCAAATTT
CCCAGGACGCGTTTTCAGGAGCTTGCCGGAGGTGGGAGAAGTGTCGCGGG
tccccgggcggggggaaacacgaggaagggggaatcgaggcgggcgggag
acAGGAGTGGGAGTCGCCGACCGGGCCGCTTTCTCGGGGCTCGCACGGCT
GGTTGCTGTATTGCGCAGACACAAGGTGTCCGTGCTGCTCTGTTTGGTAT
TCTGGATGTGTTTCCTTGTGCTGAATGCCTCCTCTGCGCTGTGA back to top
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