EWM27260.1, cds3410 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM27260.1 vs. NCBI_GenBank
Match: gi|585109441|gb|EWM27260.1| (ubiquitin-conjugating enzyme e2 j1 [Nannochloropsis gaditana]) HSP 1 Score: 597.43 bits (1539), Expect = 0.000e+0 Identity = 297/297 (100.00%), Postives = 297/297 (100.00%), Query Frame = 0
Query: 1 MWWRGSAALLSPPSLLSLLLLLLLFHRPSYALHIPNKGGKKSPPGLPRSFALSYRRLIKEWRGIMAEGLVLMDSGEGNCSLSNNTEHIRLAPCRGNLHEWHFSVAGPPGSVYEGGIYHGRVILPANYPQTAPRLQMLNPSGRFEVGADICLSATSFHQETWQPVWTVRTLVSALRSHMATPAVEVGGMECSARRRKFLARRSRGFLCRGCGVDHSNFPGRVFRSLPEVGEVSRVPGRGETRGRGNRGGRETGVGVADRAAFSGLARLVAVLRRHKVSVLLCLVFWMCFLVLNASSAL 297
MWWRGSAALLSPPSLLSLLLLLLLFHRPSYALHIPNKGGKKSPPGLPRSFALSYRRLIKEWRGIMAEGLVLMDSGEGNCSLSNNTEHIRLAPCRGNLHEWHFSVAGPPGSVYEGGIYHGRVILPANYPQTAPRLQMLNPSGRFEVGADICLSATSFHQETWQPVWTVRTLVSALRSHMATPAVEVGGMECSARRRKFLARRSRGFLCRGCGVDHSNFPGRVFRSLPEVGEVSRVPGRGETRGRGNRGGRETGVGVADRAAFSGLARLVAVLRRHKVSVLLCLVFWMCFLVLNASSAL
Sbjct: 1 MWWRGSAALLSPPSLLSLLLLLLLFHRPSYALHIPNKGGKKSPPGLPRSFALSYRRLIKEWRGIMAEGLVLMDSGEGNCSLSNNTEHIRLAPCRGNLHEWHFSVAGPPGSVYEGGIYHGRVILPANYPQTAPRLQMLNPSGRFEVGADICLSATSFHQETWQPVWTVRTLVSALRSHMATPAVEVGGMECSARRRKFLARRSRGFLCRGCGVDHSNFPGRVFRSLPEVGEVSRVPGRGETRGRGNRGGRETGVGVADRAAFSGLARLVAVLRRHKVSVLLCLVFWMCFLVLNASSAL 297
BLAST of EWM27260.1 vs. NCBI_GenBank
Match: gi|299470959|emb|CBN79943.1| (similar to ubiquitin-conjugating enzyme E2, J1 (predicted) [Ectocarpus siliculosus]) HSP 1 Score: 171.785 bits (434), Expect = 1.600e-48 Identity = 100/249 (40.16%), Postives = 143/249 (57.43%), Query Frame = 0
Query: 53 SYRRLIKEWRGIMAEGLVLMDSGEG-NCSLSNNTEHIRLAPCRGNLHEWHFSVAGPPGSVYEGGIYHGRVILPANYPQTAPRLQMLNPSGRFEVGADICLSATSFHQETWQPVWTVRTLVSALRSHMATPAVEVGGME-CSARRRKFLARRSRGFLCRGCGVDHSNFPGRVFRSLPEVGEVSRVPGRGETRGRGNRGGRETGVGV------ADRAAFSGLARLVAVLR-RHKVSVLLCLVFWMCFLVLN 292
S RR++ EW+ + A+GL + GEG + S N++E RL P GN+ EWHF+ G S +EGG+YHG + LP NYPQ+ P +++LN + RF+VG+ ICLSA+ +HQETWQP WTV +LVSAL +HM AVE+G + + +++ A +SR F+C CG H FP F +P+ + + G G+ G R VGV A R +G +RL +R LL L + + LN
Sbjct: 14 SMRRIMSEWKQVQADGLAM---GEGRSSSKGNSSETFRLKPV-GNMFEWHFTFLGAKDSPFEGGLYHGSISLPENYPQSGPSVRLLNTNMRFKVGSRICLSASEYHQETWQPSWTVASLVSALVAHMTEAAVEIGAVRGATPSQKRKAAVKSRSFVCAACGCCHHAFPEDRF-PIPKGFDKGKKAGAGDDGSAGARREGRVAVGVGEAPAAASRGGLTGRSRLSWTVRLVTSKPFLLALALIIASVFLN 257
BLAST of EWM27260.1 vs. NCBI_GenBank
Match: gi|224007399|ref|XP_002292659.1| (predicted protein, partial [Thalassiosira pseudonana CCMP1335] >gi|220971521|gb|EED89855.1| predicted protein, partial [Thalassiosira pseudonana CCMP1335]) HSP 1 Score: 149.058 bits (375), Expect = 1.977e-41 Identity = 69/124 (55.65%), Postives = 88/124 (70.97%), Query Frame = 0
Query: 82 SNNTEHIRLAPCRGNLHEWHFSVAGPPGSVYEGGIYHGRVILPANYPQTAPRLQMLNPSGRFEVGADICLSATSFHQETWQPVWTVRTLVSALRSHMATPAVEVGGMECSARRRKFLARRSRGF 205
S N +++R+ P NL WHFSV GP SVYEGG+YHGRV+LP +YP + PR+QML PSGRF G DICLSA+++H ETW P WTV +LV ALR HM T A E+GG+ + +R+ A SR +
Sbjct: 11 SRNNDYVRIGPFGKNLLRWHFSVMGPSNSVYEGGVYHGRVLLPKDYPGSPPRVQMLTPSGRFICGEDICLSASNYHPETWTPRWTVISLVDALRLHMLTTANEIGGLLSTDEKRRQYALESRSW 134
BLAST of EWM27260.1 vs. NCBI_GenBank
Match: gi|219129177|ref|XP_002184772.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217403881|gb|EEC43831.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]) HSP 1 Score: 151.369 bits (381), Expect = 9.658e-40 Identity = 79/174 (45.40%), Postives = 102/174 (58.62%), Query Frame = 0
Query: 45 GLPRSFALSYRRLIKEWRGIMAEGLVLMDSGEGNCSLSNNTEHIRLAPCRGNLHEWHFSVAGPPGSVYEGGIYHGRVILPANYPQTAPRLQMLNPSGRFEVGADICLSATSFHQETWQP-VWTVRTLVSALRSHMATPAVEVGGMECSARRRKFLARRSRGFLCR---GCGVDH 214
L R S RR+ +EW+ I+ +G+ D G +H+ L P NL WHFS G P SV+E GIYHGRVILP NYP PR+Q+ PSGRF+ DICLSA+++H E+W P W+VRT+V +LR HM T A E+GG S RK A +SR + R +DH
Sbjct: 71 SLSRDQTTSIRRIQREWKDIVQQGIAF-DWKRGRPYKFRGPQHVYLGPISNNLWIWHFSFMGLPHSVFEDGIYHGRVILPPNYPARPPRVQVWTPSGRFQTRFDICLSASNYHPESWTPSAWSVRTIVESLRLHMITAAHEIGGTNDSYEDRKEYAVQSRAWKVRVRPDVLIDH 243
BLAST of EWM27260.1 vs. NCBI_GenBank
Match: gi|1210531730|dbj|GAX09697.1| (hypothetical protein FisN_19Lh166 [Fistulifera solaris]) HSP 1 Score: 147.517 bits (371), Expect = 2.774e-38 Identity = 82/189 (43.39%), Postives = 110/189 (58.20%), Query Frame = 0
Query: 56 RLIKEWRGIMAEGLVLMDSGEGNC-SLSNNTEHIRLAPCRGNLHEWHFSVAGPPGSVYEGGIYHGRVILPANYPQTAPRLQMLNPSGRFEVGADICLSATSFHQETWQP-VWTVRTLVSALRSHMATPAVEVGGMECSARRRKFLARRSRGFLC------RGCGVDHSN------FPGRVFRSLPEVGE 230
R+ +EWR + G+ D +G S HI L P +L WHFS+ G PGSV+E G+YHGR++LP +YP T PR+ ML PSGRF G DICLSA+ +H ETWQP VW +RTLV +LR HM T A E+GG+ S +R A+ SR ++ + VDH FPG R++ + +
Sbjct: 90 RIQREWRDAINNGMAF-DWIQGTPRGKSTAASHIWLGPLGSSLLIWHFSITGVPGSVFEHGVYHGRIVLPPDYPSTPPRVMMLTPSGRFVPGVDICLSASHYHPETWQPNVWNLRTLVESLRLHMCTMAKEIGGLNDSYEKRLVYAQASRKWMYVMEHKQQRLTVDHGQMIERGLFPGTEQRNVTQSDD 277
BLAST of EWM27260.1 vs. NCBI_GenBank
Match: gi|952540750|gb|KRT85858.1| (Ubiquitin-conjugating enzyme [Oryctes borbonicus]) HSP 1 Score: 145.206 bits (365), Expect = 5.279e-38 Identity = 63/133 (47.37%), Postives = 87/133 (65.41%), Query Frame = 0
Query: 80 SLSNNTEHIRLAPCRGNLHEWHFSVAGPPGSVYEGGIYHGRVILPANYPQTAPRLQMLNPSGRFEVGADICLSATSFHQETWQPVWTVRTLVSALRSHMATPAV-EVGGMECSARRRKFLARRSRGFLCRGCG 211
L+ TE P NL EWHF+V GPPG+ ++GG+YHGR++LP YP P + +L P+GRFEV ICLS + +H E+WQP W++RT + AL + M TPA VG ++ + RK LAR+S+ F+C CG
Sbjct: 24 ELAEPTEEYHACPLEDNLFEWHFTVRGPPGTEFDGGLYHGRILLPTQYPMQPPNIILLTPNGRFEVNKKICLSISGYHPESWQPSWSIRTALLALIAFMPTPAAGTVGSLDYTPDERKTLARKSKNFVCHVCG 156
BLAST of EWM27260.1 vs. NCBI_GenBank
Match: gi|915190819|ref|XP_013320604.1| (hypothetical protein PV05_00272 [Exophiala xenobiotica] >gi|759283518|gb|KIW60020.1| hypothetical protein PV05_00272 [Exophiala xenobiotica]) HSP 1 Score: 145.976 bits (367), Expect = 2.794e-37 Identity = 74/151 (49.01%), Postives = 95/151 (62.91%), Query Frame = 0
Query: 70 VLMDSGEGNCSLSNNTEHIRLAPC-RGNLHEWHFSVAGPPG-SVYEGGIYHGRVILPANYPQTAPRLQMLNPSGRFEVGADICLSATSFHQETWQPVWTVRTLVSALRSHMATP--AVEVGGMECSARRRKFLARRSRGFLCRGCGVDHSN 216
+L ++ E + SN AP +LHEWHF++ GPP S Y GG+YHGR+ LPA YP P + L PSGRFEV +ICLS + FH+ETW P W VRT ++ALRS MA A +VGG+E SA RK LAR S+G+ C CG + +
Sbjct: 10 LLKETAELSSQSSNPNPAFYAAPVSEADLHEWHFTLLGPPSPSPYAGGMYHGRITLPATYPLKPPNFRFLTPSGRFEVNREICLSISGFHEETWMPAWGVRTALTALRSFMAEKGSAGQVGGLEASADVRKRLARESKGWKCEACGKTNED 160
BLAST of EWM27260.1 vs. NCBI_GenBank
Match: gi|557013219|ref|XP_006007151.1| (PREDICTED: ubiquitin-conjugating enzyme E2 J1 isoform X2 [Latimeria chalumnae]) HSP 1 Score: 142.51 bits (358), Expect = 3.622e-37 Identity = 63/135 (46.67%), Postives = 84/135 (62.22%), Query Frame = 0
Query: 79 CSLSNNTEHIRLAPCRGNLHEWHFSVAGPPGSVYEGGIYHGRVILPANYPQTAPRLQMLNPSGRFEVGADICLSATSFHQETWQPVWTVRTLVSALRSHMATPAV-EVGGMECSARRRKFLARRSRGFLCRGCGV 212
L + TEH P NL EWHF+V GPP S ++GG+YHGR++LP YP P + +L P+GRFEVG ICLS + H ETWQP W++RT + A+ M T +G ++ + RK LA+RS+ F C GCG
Sbjct: 20 AELKDPTEHYHAQPLEDNLFEWHFTVRGPPDSEFDGGVYHGRIVLPPEYPMKPPSIILLTPNGRFEVGKKICLSISGHHPETWQPSWSIRTALLAIIGFMPTKGEGAIGSLDYTPEERKALAKRSQEFCCEGCGA 154
BLAST of EWM27260.1 vs. NCBI_GenBank
Match: gi|557013217|ref|XP_006007150.1| (PREDICTED: ubiquitin-conjugating enzyme E2 J1 isoform X1 [Latimeria chalumnae]) HSP 1 Score: 142.895 bits (359), Expect = 7.042e-37 Identity = 63/135 (46.67%), Postives = 84/135 (62.22%), Query Frame = 0
Query: 79 CSLSNNTEHIRLAPCRGNLHEWHFSVAGPPGSVYEGGIYHGRVILPANYPQTAPRLQMLNPSGRFEVGADICLSATSFHQETWQPVWTVRTLVSALRSHMATPAV-EVGGMECSARRRKFLARRSRGFLCRGCGV 212
L + TEH P NL EWHF+V GPP S ++GG+YHGR++LP YP P + +L P+GRFEVG ICLS + H ETWQP W++RT + A+ M T +G ++ + RK LA+RS+ F C GCG
Sbjct: 20 AELKDPTEHYHAQPLEDNLFEWHFTVRGPPDSEFDGGVYHGRIVLPPEYPMKPPSIILLTPNGRFEVGKKICLSISGHHPETWQPSWSIRTALLAIIGFMPTKGEGAIGSLDYTPEERKALAKRSQEFCCEGCGA 154
BLAST of EWM27260.1 vs. NCBI_GenBank
Match: gi|1080045566|ref|XP_018563993.1| (PREDICTED: ubiquitin-conjugating enzyme E2 J1-like [Anoplophora glabripennis]) HSP 1 Score: 141.354 bits (355), Expect = 1.140e-36 Identity = 61/133 (45.86%), Postives = 86/133 (64.66%), Query Frame = 0
Query: 80 SLSNNTEHIRLAPCRGNLHEWHFSVAGPPGSVYEGGIYHGRVILPANYPQTAPRLQMLNPSGRFEVGADICLSATSFHQETWQPVWTVRTLVSALRSHMATPAV-EVGGMECSARRRKFLARRSRGFLCRGCG 211
L+N TE P NL EWHF+V GPP + +EGG YHGR++LP+ YP P + +L P+GRFEV ICLS + H E+WQP W++RT + AL + M TPA +G ++ +A R+ LA++S+ + C CG
Sbjct: 24 ELANPTEEYYACPLEDNLFEWHFTVRGPPSTEFEGGFYHGRILLPSQYPMQPPNIILLTPNGRFEVNKKICLSISGHHPESWQPSWSIRTALLALIAFMPTPAAGTIGSLDYTAEERQILAKKSKSWECPTCG 156 The following BLAST results are available for this feature:
BLAST of EWM27260.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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