EWM27260.1, cds3410 (CDS) Nannochloropsis gaditana

Overview
NameEWM27260.1
Unique Namecds3410
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002461.1:378080..378973 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM27260.1
Productubiquitin-conjugating enzyme e2 j1
Orig transcript idgnl|cribi|Naga_100038g12.7715.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002461.1supercontigCM002461.1:378080..378973 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0016740transferase activity
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: INTERPRO
TermDefinition
IPR000608UBQ-conjugat_E2
IPR016135UBQ-conjugating_enzyme/RWD
Homology
BLAST of EWM27260.1 vs. NCBI_GenBank
Match: gi|585109441|gb|EWM27260.1| (ubiquitin-conjugating enzyme e2 j1 [Nannochloropsis gaditana])

HSP 1 Score: 597.43 bits (1539), Expect = 0.000e+0
Identity = 297/297 (100.00%), Postives = 297/297 (100.00%), Query Frame = 0
Query:    1 MWWRGSAALLSPPSLLSLLLLLLLFHRPSYALHIPNKGGKKSPPGLPRSFALSYRRLIKEWRGIMAEGLVLMDSGEGNCSLSNNTEHIRLAPCRGNLHEWHFSVAGPPGSVYEGGIYHGRVILPANYPQTAPRLQMLNPSGRFEVGADICLSATSFHQETWQPVWTVRTLVSALRSHMATPAVEVGGMECSARRRKFLARRSRGFLCRGCGVDHSNFPGRVFRSLPEVGEVSRVPGRGETRGRGNRGGRETGVGVADRAAFSGLARLVAVLRRHKVSVLLCLVFWMCFLVLNASSAL 297
            MWWRGSAALLSPPSLLSLLLLLLLFHRPSYALHIPNKGGKKSPPGLPRSFALSYRRLIKEWRGIMAEGLVLMDSGEGNCSLSNNTEHIRLAPCRGNLHEWHFSVAGPPGSVYEGGIYHGRVILPANYPQTAPRLQMLNPSGRFEVGADICLSATSFHQETWQPVWTVRTLVSALRSHMATPAVEVGGMECSARRRKFLARRSRGFLCRGCGVDHSNFPGRVFRSLPEVGEVSRVPGRGETRGRGNRGGRETGVGVADRAAFSGLARLVAVLRRHKVSVLLCLVFWMCFLVLNASSAL
Sbjct:    1 MWWRGSAALLSPPSLLSLLLLLLLFHRPSYALHIPNKGGKKSPPGLPRSFALSYRRLIKEWRGIMAEGLVLMDSGEGNCSLSNNTEHIRLAPCRGNLHEWHFSVAGPPGSVYEGGIYHGRVILPANYPQTAPRLQMLNPSGRFEVGADICLSATSFHQETWQPVWTVRTLVSALRSHMATPAVEVGGMECSARRRKFLARRSRGFLCRGCGVDHSNFPGRVFRSLPEVGEVSRVPGRGETRGRGNRGGRETGVGVADRAAFSGLARLVAVLRRHKVSVLLCLVFWMCFLVLNASSAL 297          
BLAST of EWM27260.1 vs. NCBI_GenBank
Match: gi|299470959|emb|CBN79943.1| (similar to ubiquitin-conjugating enzyme E2, J1 (predicted) [Ectocarpus siliculosus])

HSP 1 Score: 171.785 bits (434), Expect = 1.600e-48
Identity = 100/249 (40.16%), Postives = 143/249 (57.43%), Query Frame = 0
Query:   53 SYRRLIKEWRGIMAEGLVLMDSGEG-NCSLSNNTEHIRLAPCRGNLHEWHFSVAGPPGSVYEGGIYHGRVILPANYPQTAPRLQMLNPSGRFEVGADICLSATSFHQETWQPVWTVRTLVSALRSHMATPAVEVGGME-CSARRRKFLARRSRGFLCRGCGVDHSNFPGRVFRSLPEVGEVSRVPGRGETRGRGNRGGRETGVGV------ADRAAFSGLARLVAVLR-RHKVSVLLCLVFWMCFLVLN 292
            S RR++ EW+ + A+GL +   GEG + S  N++E  RL P  GN+ EWHF+  G   S +EGG+YHG + LP NYPQ+ P +++LN + RF+VG+ ICLSA+ +HQETWQP WTV +LVSAL +HM   AVE+G +   +  +++  A +SR F+C  CG  H  FP   F  +P+  +  +  G G+    G R      VGV      A R   +G +RL   +R       LL L   +  + LN
Sbjct:   14 SMRRIMSEWKQVQADGLAM---GEGRSSSKGNSSETFRLKPV-GNMFEWHFTFLGAKDSPFEGGLYHGSISLPENYPQSGPSVRLLNTNMRFKVGSRICLSASEYHQETWQPSWTVASLVSALVAHMTEAAVEIGAVRGATPSQKRKAAVKSRSFVCAACGCCHHAFPEDRF-PIPKGFDKGKKAGAGDDGSAGARREGRVAVGVGEAPAAASRGGLTGRSRLSWTVRLVTSKPFLLALALIIASVFLN 257          
BLAST of EWM27260.1 vs. NCBI_GenBank
Match: gi|224007399|ref|XP_002292659.1| (predicted protein, partial [Thalassiosira pseudonana CCMP1335] >gi|220971521|gb|EED89855.1| predicted protein, partial [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 149.058 bits (375), Expect = 1.977e-41
Identity = 69/124 (55.65%), Postives = 88/124 (70.97%), Query Frame = 0
Query:   82 SNNTEHIRLAPCRGNLHEWHFSVAGPPGSVYEGGIYHGRVILPANYPQTAPRLQMLNPSGRFEVGADICLSATSFHQETWQPVWTVRTLVSALRSHMATPAVEVGGMECSARRRKFLARRSRGF 205
            S N +++R+ P   NL  WHFSV GP  SVYEGG+YHGRV+LP +YP + PR+QML PSGRF  G DICLSA+++H ETW P WTV +LV ALR HM T A E+GG+  +  +R+  A  SR +
Sbjct:   11 SRNNDYVRIGPFGKNLLRWHFSVMGPSNSVYEGGVYHGRVLLPKDYPGSPPRVQMLTPSGRFICGEDICLSASNYHPETWTPRWTVISLVDALRLHMLTTANEIGGLLSTDEKRRQYALESRSW 134          
BLAST of EWM27260.1 vs. NCBI_GenBank
Match: gi|219129177|ref|XP_002184772.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217403881|gb|EEC43831.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 151.369 bits (381), Expect = 9.658e-40
Identity = 79/174 (45.40%), Postives = 102/174 (58.62%), Query Frame = 0
Query:   45 GLPRSFALSYRRLIKEWRGIMAEGLVLMDSGEGNCSLSNNTEHIRLAPCRGNLHEWHFSVAGPPGSVYEGGIYHGRVILPANYPQTAPRLQMLNPSGRFEVGADICLSATSFHQETWQP-VWTVRTLVSALRSHMATPAVEVGGMECSARRRKFLARRSRGFLCR---GCGVDH 214
             L R    S RR+ +EW+ I+ +G+   D   G        +H+ L P   NL  WHFS  G P SV+E GIYHGRVILP NYP   PR+Q+  PSGRF+   DICLSA+++H E+W P  W+VRT+V +LR HM T A E+GG   S   RK  A +SR +  R      +DH
Sbjct:   71 SLSRDQTTSIRRIQREWKDIVQQGIAF-DWKRGRPYKFRGPQHVYLGPISNNLWIWHFSFMGLPHSVFEDGIYHGRVILPPNYPARPPRVQVWTPSGRFQTRFDICLSASNYHPESWTPSAWSVRTIVESLRLHMITAAHEIGGTNDSYEDRKEYAVQSRAWKVRVRPDVLIDH 243          
BLAST of EWM27260.1 vs. NCBI_GenBank
Match: gi|1210531730|dbj|GAX09697.1| (hypothetical protein FisN_19Lh166 [Fistulifera solaris])

HSP 1 Score: 147.517 bits (371), Expect = 2.774e-38
Identity = 82/189 (43.39%), Postives = 110/189 (58.20%), Query Frame = 0
Query:   56 RLIKEWRGIMAEGLVLMDSGEGNC-SLSNNTEHIRLAPCRGNLHEWHFSVAGPPGSVYEGGIYHGRVILPANYPQTAPRLQMLNPSGRFEVGADICLSATSFHQETWQP-VWTVRTLVSALRSHMATPAVEVGGMECSARRRKFLARRSRGFLC------RGCGVDHSN------FPGRVFRSLPEVGE 230
            R+ +EWR  +  G+   D  +G     S    HI L P   +L  WHFS+ G PGSV+E G+YHGR++LP +YP T PR+ ML PSGRF  G DICLSA+ +H ETWQP VW +RTLV +LR HM T A E+GG+  S  +R   A+ SR ++       +   VDH        FPG   R++ +  +
Sbjct:   90 RIQREWRDAINNGMAF-DWIQGTPRGKSTAASHIWLGPLGSSLLIWHFSITGVPGSVFEHGVYHGRIVLPPDYPSTPPRVMMLTPSGRFVPGVDICLSASHYHPETWQPNVWNLRTLVESLRLHMCTMAKEIGGLNDSYEKRLVYAQASRKWMYVMEHKQQRLTVDHGQMIERGLFPGTEQRNVTQSDD 277          
BLAST of EWM27260.1 vs. NCBI_GenBank
Match: gi|952540750|gb|KRT85858.1| (Ubiquitin-conjugating enzyme [Oryctes borbonicus])

HSP 1 Score: 145.206 bits (365), Expect = 5.279e-38
Identity = 63/133 (47.37%), Postives = 87/133 (65.41%), Query Frame = 0
Query:   80 SLSNNTEHIRLAPCRGNLHEWHFSVAGPPGSVYEGGIYHGRVILPANYPQTAPRLQMLNPSGRFEVGADICLSATSFHQETWQPVWTVRTLVSALRSHMATPAV-EVGGMECSARRRKFLARRSRGFLCRGCG 211
             L+  TE     P   NL EWHF+V GPPG+ ++GG+YHGR++LP  YP   P + +L P+GRFEV   ICLS + +H E+WQP W++RT + AL + M TPA   VG ++ +   RK LAR+S+ F+C  CG
Sbjct:   24 ELAEPTEEYHACPLEDNLFEWHFTVRGPPGTEFDGGLYHGRILLPTQYPMQPPNIILLTPNGRFEVNKKICLSISGYHPESWQPSWSIRTALLALIAFMPTPAAGTVGSLDYTPDERKTLARKSKNFVCHVCG 156          
BLAST of EWM27260.1 vs. NCBI_GenBank
Match: gi|915190819|ref|XP_013320604.1| (hypothetical protein PV05_00272 [Exophiala xenobiotica] >gi|759283518|gb|KIW60020.1| hypothetical protein PV05_00272 [Exophiala xenobiotica])

HSP 1 Score: 145.976 bits (367), Expect = 2.794e-37
Identity = 74/151 (49.01%), Postives = 95/151 (62.91%), Query Frame = 0
Query:   70 VLMDSGEGNCSLSNNTEHIRLAPC-RGNLHEWHFSVAGPPG-SVYEGGIYHGRVILPANYPQTAPRLQMLNPSGRFEVGADICLSATSFHQETWQPVWTVRTLVSALRSHMATP--AVEVGGMECSARRRKFLARRSRGFLCRGCGVDHSN 216
            +L ++ E +   SN       AP    +LHEWHF++ GPP  S Y GG+YHGR+ LPA YP   P  + L PSGRFEV  +ICLS + FH+ETW P W VRT ++ALRS MA    A +VGG+E SA  RK LAR S+G+ C  CG  + +
Sbjct:   10 LLKETAELSSQSSNPNPAFYAAPVSEADLHEWHFTLLGPPSPSPYAGGMYHGRITLPATYPLKPPNFRFLTPSGRFEVNREICLSISGFHEETWMPAWGVRTALTALRSFMAEKGSAGQVGGLEASADVRKRLARESKGWKCEACGKTNED 160          
BLAST of EWM27260.1 vs. NCBI_GenBank
Match: gi|557013219|ref|XP_006007151.1| (PREDICTED: ubiquitin-conjugating enzyme E2 J1 isoform X2 [Latimeria chalumnae])

HSP 1 Score: 142.51 bits (358), Expect = 3.622e-37
Identity = 63/135 (46.67%), Postives = 84/135 (62.22%), Query Frame = 0
Query:   79 CSLSNNTEHIRLAPCRGNLHEWHFSVAGPPGSVYEGGIYHGRVILPANYPQTAPRLQMLNPSGRFEVGADICLSATSFHQETWQPVWTVRTLVSALRSHMATPAV-EVGGMECSARRRKFLARRSRGFLCRGCGV 212
              L + TEH    P   NL EWHF+V GPP S ++GG+YHGR++LP  YP   P + +L P+GRFEVG  ICLS +  H ETWQP W++RT + A+   M T     +G ++ +   RK LA+RS+ F C GCG 
Sbjct:   20 AELKDPTEHYHAQPLEDNLFEWHFTVRGPPDSEFDGGVYHGRIVLPPEYPMKPPSIILLTPNGRFEVGKKICLSISGHHPETWQPSWSIRTALLAIIGFMPTKGEGAIGSLDYTPEERKALAKRSQEFCCEGCGA 154          
BLAST of EWM27260.1 vs. NCBI_GenBank
Match: gi|557013217|ref|XP_006007150.1| (PREDICTED: ubiquitin-conjugating enzyme E2 J1 isoform X1 [Latimeria chalumnae])

HSP 1 Score: 142.895 bits (359), Expect = 7.042e-37
Identity = 63/135 (46.67%), Postives = 84/135 (62.22%), Query Frame = 0
Query:   79 CSLSNNTEHIRLAPCRGNLHEWHFSVAGPPGSVYEGGIYHGRVILPANYPQTAPRLQMLNPSGRFEVGADICLSATSFHQETWQPVWTVRTLVSALRSHMATPAV-EVGGMECSARRRKFLARRSRGFLCRGCGV 212
              L + TEH    P   NL EWHF+V GPP S ++GG+YHGR++LP  YP   P + +L P+GRFEVG  ICLS +  H ETWQP W++RT + A+   M T     +G ++ +   RK LA+RS+ F C GCG 
Sbjct:   20 AELKDPTEHYHAQPLEDNLFEWHFTVRGPPDSEFDGGVYHGRIVLPPEYPMKPPSIILLTPNGRFEVGKKICLSISGHHPETWQPSWSIRTALLAIIGFMPTKGEGAIGSLDYTPEERKALAKRSQEFCCEGCGA 154          
BLAST of EWM27260.1 vs. NCBI_GenBank
Match: gi|1080045566|ref|XP_018563993.1| (PREDICTED: ubiquitin-conjugating enzyme E2 J1-like [Anoplophora glabripennis])

HSP 1 Score: 141.354 bits (355), Expect = 1.140e-36
Identity = 61/133 (45.86%), Postives = 86/133 (64.66%), Query Frame = 0
Query:   80 SLSNNTEHIRLAPCRGNLHEWHFSVAGPPGSVYEGGIYHGRVILPANYPQTAPRLQMLNPSGRFEVGADICLSATSFHQETWQPVWTVRTLVSALRSHMATPAV-EVGGMECSARRRKFLARRSRGFLCRGCG 211
             L+N TE     P   NL EWHF+V GPP + +EGG YHGR++LP+ YP   P + +L P+GRFEV   ICLS +  H E+WQP W++RT + AL + M TPA   +G ++ +A  R+ LA++S+ + C  CG
Sbjct:   24 ELANPTEEYYACPLEDNLFEWHFTVRGPPSTEFEGGFYHGRILLPSQYPMQPPNIILLTPNGRFEVNKKICLSISGHHPESWQPSWSIRTALLALIAFMPTPAAGTIGSLDYTAEERQILAKKSKSWECPTCG 156          
The following BLAST results are available for this feature:
BLAST of EWM27260.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585109441|gb|EWM27260.1|0.000e+0100.00ubiquitin-conjugating enzyme e2 j1 [Nannochloropsi... [more]
gi|299470959|emb|CBN79943.1|1.600e-4840.16similar to ubiquitin-conjugating enzyme E2, J1 (pr... [more]
gi|224007399|ref|XP_002292659.1|1.977e-4155.65predicted protein, partial [Thalassiosira pseudona... [more]
gi|219129177|ref|XP_002184772.1|9.658e-4045.40predicted protein [Phaeodactylum tricornutum CCAP ... [more]
gi|1210531730|dbj|GAX09697.1|2.774e-3843.39hypothetical protein FisN_19Lh166 [Fistulifera sol... [more]
gi|952540750|gb|KRT85858.1|5.279e-3847.37Ubiquitin-conjugating enzyme [Oryctes borbonicus][more]
gi|915190819|ref|XP_013320604.1|2.794e-3749.01hypothetical protein PV05_00272 [Exophiala xenobio... [more]
gi|557013219|ref|XP_006007151.1|3.622e-3746.67PREDICTED: ubiquitin-conjugating enzyme E2 J1 isof... [more]
gi|557013217|ref|XP_006007150.1|7.042e-3746.67PREDICTED: ubiquitin-conjugating enzyme E2 J1 isof... [more]
gi|1080045566|ref|XP_018563993.1|1.140e-3645.86PREDICTED: ubiquitin-conjugating enzyme E2 J1-like... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna3419rna3419Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications