rna3412, rna3412 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna3412
Unique Name	rna3412
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1470
Alignment location	CM002461.1:353546..355831 +

Link to JBrowse

Properties


Property Name	Value
Product	haloacid dehalogenase superfamily protein
Orig transcript id	gnl\|cribi\|Naga_100038g4.7706.mrna
Orig protein id	gnl\|cribi\|Naga_100038g4.7706
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002461.1	supercontig	CM002461.1:353546..355831 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100038g4	gene3286	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna3412	rna3412-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM27251.1	cds3403	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002461.1:353546..355831+
coding sequence from alignment at CM002461.1:353546..355831+

mRNA sequence

>rna3412 ID=rna3412|Name=rna3412|organism=Nannochloropsis gaditana|type=mRNA|length=1470bp
ATGGCGGCGGTAGCAGCTATGGAAGCTACGGCGGTGGGGGCAGGTCACTA
TGGCGGGGGAGGAGGCGGCTACGGCGGAGGTGGAGGTTACGGGGGTGGGC
GCGGGGGTGGCGATCGTATGGGAGGCTTGGGCGCTGGCCTCCGCAGCATT
CAGTGGGACCTGAGCAAGCTGCCCCCGTTCGAAAAGAACTTCTACATCGA
GCACCCCGACGTCTCCAAGCGGGACGAAGGGGACGCGGCGCGGTGGCGGG
CGAAGCACGTAATCACCGTCCAGGGGCACGGCATTCCCAAGCCCGTCTTT
ACGTTCGAGGAGGCCTCCATGCCCGAGTACGTCCTTCAGGAGGTGATGAA
GCAAGGCTTCGACAGGCCCACCCCTATTCAGTCTCAGGGCTGGCCGATGG
CGTTGCTGGGACGGGACATGATCGGGATCTCCGCCACGGGCTCGGGCAAG
ACGTTGGCCTTCCTGCTCCCAGCCATGATCCACATCAACGCGCAGCCCTA
CCTCGAATCTGGGGACGGTCCAATCGTGCTGGTGCTTGCTCCCACACGGG
AGCTTGCGCTGCAGATTAAACAGGAATGCGACAAGTTTGGCCGTTCCTCC
TCCATCAAAAACACGTGTGTGTACGGCGGAGTGCCCAAGCGCGAGCAAGT
CTACGACCTGAAACGCGGGATGGAGATTGTCGTGGCCACGCCCGGGCGCC
TGATCGACCACCTGGAGAGCGGCATGACCAACCTAAGGCGCGTCACGTAC
CTGGTCTTGGACGAGGCTGACCGCATGTTGGACATGGGCTTCGAGCCCCA
GCTACGGTCCATTGTCTCCCAGATCCGCCCGGACAGGCAGACGCTCATGT
GGAGTGCGACGTGGCCGAAAGAGGTGCAGAGCCTGGCCCGGGACTTCCTC
AAGGACCCTTACCAGGTGACTGTGGGCTCCTTGGACCTGGCGGCGAACAA
GGACATCAAGCAGGAGGTGATGGTGTGCGAGGACCGGGACAAATATGGGC
TGCTTTTGCGGGCATTAAAGGAGAACAACACTGGTGGGAAGGTGCTGGTG
TTCGTAGAAACGAAGCGGGGCTGCGACCAACTTCAGCGCTCCTTACAAAT
GGACGGGTTCTCGGCCGTGGCGATCCACGGTGACAAGAGCCAGCAAGACC
GGGACTGGACCCTCCGCCAGTTCAAGGAGGGGAGGTCCAACATTTTGGTG
GCTACGGACGTAGCGGCGCGAGGCTTGGACGTGAAAGATATCCAGATGGT
GGCTAATTTTGACTTCCCCAACAATATGGAGGATTATATTCATCGTGTCG
GGCGCACGGGAAGGGCGGGTGCCAAAGGTTACGCCCTCTCATTTGTGACG
CAAAAACATGCCAGGATTTCACGGGAGCTCGCGAAGATTCTGGAGGAGTC
GGGAAACCAGGTTCCTGCTGCCCTGCGTGGGATGGGTGGCGGAGGAGGTT
ATGGCAGGGGCCGGTACTGA

protein sequence of rna3412

>rna3412-protein ID=rna3412-protein|Name=rna3412|organism=Nannochloropsis gaditana|type=polypeptide|length=344bp
MSSVTIIHFNTCRPIKTFMRDSVALVLLWLLLVALIHSGISWSSSGTLLS
KAFRPNSEHLPLSRPRRHLGFGPPTSVVMVQSLNLQGVLAIGQVIRNPSL
MLPHVSVKHIGFLDFELLRQAGIKGVIFDKDNTITAPYVDEVHEQVAGAF
ETSKRVFGPRKLIIISNSAGTLDDSGHAAAIRIESSLGVPVLRHAVKKPG
AIPEVLEHFKKECGPDTTYEDLCIIGDRLLTDVMWGNFAGMLTVHTQILT
PEGDNKVAAIVRRLENGFSRILSPHWSAPSHPAMGKKVVVGSGGGEGKGG
RGGGGPLPRIPSTHAGVPASQEIGSVGLQLYRRTEGSKAAEARS

mRNA from alignment at CM002461.1:353546..355831+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna3412 ID=rna3412|Name=rna3412|organism=Nannochloropsis gaditana|type=mRNA|length=2286bp|location=Sequence derived from alignment at CM002461.1:353546..355831+ (Nannochloropsis gaditana)
ATGTCATCAGTCACTATCATTCATTTCAACACATGCAGGCCTATAAAGAC
GTTTATGCGGGACAGTGTGGCTCTGGTGTTACTCTGGCTCCTTCTTGTTG
CACTAATCCATAGTGGGATTTCGTGGTCGTCGTCTGGTACACTTCTGTCC
AAAGCCTTCAGGCCGAATAGTGAACACCTCCCCctgtctcgtcctcgtcg
tcatctCGGCTTTGGGCCCCCAACGAGTGTAGTTATGGTTCAAAGCCTTA
ATCTTCAAGGCGTCCTTGCGATCGGCCAGGTCATTCGCAATCCTTCACTC
ATGCTACCGCACGTCTCAGTCAAACATATCGGTTTCTTGGACTTTGAACT
TTTGCGCCAAGCTGGTGAGTTCAATGACCAGATGAGAAGATtgtggggga
aggcaggcatATGATAAAGGAATAACATTGACCAAAGGGTcgtttgcccc
ccccctttttttagTTTTATAAATCTGCTTGGTATGGCAACTGAAATGTC
TGTAGCAGAATTTCGATGGGGCAATCAATACTAGGGAGGAAACTATGTCG
TGCCTAATTTGGATATTTATGCGGCTCTATAAAACTTTAATGTTTCGCAT
GGCCTGGAATATGCATAGACTTACTTTCACGTTTCGTCAACCAACATGGA
AGGCATCAAAGGCGTCATCTTCGACAAAGACAATACCATCACCGCCCCCT
ACGTCGACGAGGTGCACGAACAAGTAGCTGGCGCTTTTGAAACGTCGAAA
CGCGTTTTCGGACCAAGGAAGCTCATCATAATCTCCAACTCGGCGGGCAC
TCTTGACGATTCTGGTCACGCAGCCGCTATTCGGATTGAATCGAGTTTGG
GCGTGCCTGTCTTACGGCATGCGGTCAAAAAACCTGGGGCGATAccggag
gtgctggagcaTTTTAAGAAAGAATGCGGCCCTGATACAACGTATGAAGA
CTTGTGTATCATTGGGGACCGGCTCTTGACCGATGTAATGTGGGGAAATT
TCGCAGGCATGTTGACGGTGCACACGCAAATCTTGACACCAGAAGGAGAT
AATAAAGTGGCGGCAATTGTCAGAAGACTTGAAAATGGATTCAGTCGGAT
TTTGAGTCCGCATTGGTCTGCTCCTTCGCATCCTGCAATGGGTAAAAAGG
TCGTCGTCggcagcggagggggggaagggaaaggagggagggggggagga
ggtagcaCAGATACCCAATAAGTCAAGTGAAAAAAGAAGCATGAAAGGAG
CTAAAAATGCTGGCTTGCCATTGAAACATTTCAGTCTTGCTACCCAATTT
AACCTGCATGCGAAGGACTGGGTGTTGCTTTTGTAGCGTCGCGCATGGGC
CGGGTGAGGCCTGGGAGCTGGTCgggggggcttggaggaggaaagaggag
agaagactGCCATTTGCCCTGCGTGGTGCTCACTGCCATGGCACGACaac
gctcttcctccggcaACCTGCGCAGTTGAATCTATGCGTGCTTGCATCAT
AGTCCATGACTCACGGGGCGAGTGCGACGCATTTTGAGGATGTAGGGGGT
TGAGGCAGCTTTACCATCGTGGTATCCACAATGATGCTTCTTAGgaccac
tgcctccttcttcaccgtTTCGTTTTCGCATTTCAGGTCCGGCGCATTGC
AAAACCccgctttctctgcctcaGTATATTGATAATATTTGTATTCATGA
TGGTTTTGTGGCTCGTGTGGCATATACatgagagggaaggcatgaAGAAT
TCGATTCTTGACGGGGGTTATTGCTTACGGGGAGACGAGTCGAGAACACA
CGAACCTGAAAGAATGGAAATTGAAAGGTCGTGAAAAACCCTCACTTTCA
CCATATGCACTTGATAACTCATACAAATGCAGGACCTAAGAAGGGAAAGT
CCCTGAAGGAGCAGCTTGGGTCTTCCCTATTCCCCCTTCACAGGGCCCTT
GCCCCGAATCCCATCTACACACGCAGGGGTACCCGCCTCGCAGGAGATCG
GTAAGCCGTGAATAAAATGGTACTGCTTGATGTGCCGCTTCTTTCTGTGC
ATTTGTCGTCTACGGCCGCATTCCCCTTGTTGAGCGGGAGCTAGGCCGCG
ACAGACCAGTTTGCCCTGTTCCTGGTGGCCGCTGCGATTGAGACTTTTTG
TTGCCCGCAAAAACATTTGGTTTCTCAATTTTGACGTGCGTGTCTTGTCG
ATACATATTTCGCATGCACAGGCAGTGTGGGTCTCCAGCTCTACCGCCGC
ACGGAAGGAAGCAAAGCAGCCGAGGCCAGGTCCTAG

Coding sequence (CDS) from alignment at CM002461.1:353546..355831+

>rna3412 ID=rna3412|Name=rna3412|organism=Nannochloropsis gaditana|type=CDS|length=4140bp|location=Sequence derived from alignment at CM002461.1:353546..355831+ (Nannochloropsis gaditana)
ATGTCATCAGTCACTATCATTCATTTCAACACATGCAGGCCTATAAAGAC
GTTTATGCGGGACAGTGTGGCTCTGGTGTTACTCTGGCTCCTTCTTGTTG
CACTAATCCATAGTGGGATTTCGTGGTCGTCGTCTGGTACACTTCTGTCC
AAAGCCTTCAGGCCGAATAGTGAACACCTCCCCctgtctcgtcctcgtcg
tcatctCGGCTTTGGGCCCCCAACGAGTGTAGTTATGGTTCAAAGCCTTA
ATCTTCAAGGCGTCCTTGCGATCGGCCAGGTCATTCGCAATCCTTCACTC
ATGCTACCGCACGTCTCAGTCAAACATATCGGTTTCTTGGACTTTGAACT
TTTGCGCCAAGCTGGCATCAAAGGCGTCATCTTCGACAAAGACAATACCA
TCACCGCCCCCTACGTCGACGAGGTGCACGAACAAGTAGCTGGCGCTTTT
GAAACGTCGAAACGCGTTTTCGGACCAAGGAAGCTCATCATAATCTCCAA
CTCGGCGGGCACTCTTGACGATTCTGGTCACGCAGCCGCTATTCGGATTG
AATCGAGTTTGGGCGTGCCTGTCTTACGGCATGCGGTCAAAAAACCTGGG
GCGATAccggaggtgctggagcaTTTTAAGAAAGAATGCGGCCCTGATAC
AACGTATGAAGACTTGTGTATCATTGGGGACCGGCTCTTGACCGATGTAA
TGTGGGGAAATTTCGCAGGCATGTTGACGGTGCACACGCAAATCTTGACA
CCAGAAGGAGATAATAAAGTGGCGGCAATTGTCAGAAGACTTGAAAATGG
ATTCAGTCGGATTTTGAGTCCGCATTGGTCTGCTCCTTCGCATCCTGCAA
TGGGTAAAAAGGTCGTCGTCggcagcggagggggggaagggaaaggaggg
agggggggaggagGGCCCTTGCCCCGAATCCCATCTACACACGCAGGGGT
ACCCGCCTCGCAGGAGATCGGCAGTGTGGGTCTCCAGCTCTACCGCCGCA
CGGAAGGAAGCAAAGCAGCCGAGGCCAGGTCCTAGATGTCATCAGTCACT
ATCATTCATTTCAACACATGCAGGCCTATAAAGACGTTTATGCGGGACAG
TGTGGCTCTGGTGTTACTCTGGCTCCTTCTTGTTGCACTAATCCATAGTG
GGATTTCGTGGTCGTCGTCTGGTACACTTCTGTCCAAAGCCTTCAGGCCG
AATAGTGAACACCTCCCCctgtctcgtcctcgtcgtcatctCGGCTTTGG
GCCCCCAACGAGTGTAGTTATGGTTCAAAGCCTTAATCTTCAAGGCGTCC
TTGCGATCGGCCAGGTCATTCGCAATCCTTCACTCATGCTACCGCACGTC
TCAGTCAAACATATCGGTTTCTTGGACTTTGAACTTTTGCGCCAAGCTGG
CATCAAAGGCGTCATCTTCGACAAAGACAATACCATCACCGCCCCCTACG
TCGACGAGGTGCACGAACAAGTAGCTGGCGCTTTTGAAACGTCGAAACGC
GTTTTCGGACCAAGGAAGCTCATCATAATCTCCAACTCGGCGGGCACTCT
TGACGATTCTGGTCACGCAGCCGCTATTCGGATTGAATCGAGTTTGGGCG
TGCCTGTCTTACGGCATGCGGTCAAAAAACCTGGGGCGATAccggaggtg
ctggagcaTTTTAAGAAAGAATGCGGCCCTGATACAACGTATGAAGACTT
GTGTATCATTGGGGACCGGCTCTTGACCGATGTAATGTGGGGAAATTTCG
CAGGCATGTTGACGGTGCACACGCAAATCTTGACACCAGAAGGAGATAAT
AAAGTGGCGGCAATTGTCAGAAGACTTGAAAATGGATTCAGTCGGATTTT
GAGTCCGCATTGGTCTGCTCCTTCGCATCCTGCAATGGGTAAAAAGGTCG
TCGTCggcagcggagggggggaagggaaaggagggagggggggaggagGG
CCCTTGCCCCGAATCCCATCTACACACGCAGGGGTACCCGCCTCGCAGGA
GATCGGCAGTGTGGGTCTCCAGCTCTACCGCCGCACGGAAGGAAGCAAAG
CAGCCGAGGCCAGGTCCTAGATGTCATCAGTCACTATCATTCATTTCAAC
ACATGCAGGCCTATAAAGACGTTTATGCGGGACAGTGTGGCTCTGGTGTT
ACTCTGGCTCCTTCTTGTTGCACTAATCCATAGTGGGATTTCGTGGTCGT
CGTCTGGTACACTTCTGTCCAAAGCCTTCAGGCCGAATAGTGAACACCTC
CCCctgtctcgtcctcgtcgtcatctCGGCTTTGGGCCCCCAACGAGTGT
AGTTATGGTTCAAAGCCTTAATCTTCAAGGCGTCCTTGCGATCGGCCAGG
TCATTCGCAATCCTTCACTCATGCTACCGCACGTCTCAGTCAAACATATC
GGTTTCTTGGACTTTGAACTTTTGCGCCAAGCTGGCATCAAAGGCGTCAT
CTTCGACAAAGACAATACCATCACCGCCCCCTACGTCGACGAGGTGCACG
AACAAGTAGCTGGCGCTTTTGAAACGTCGAAACGCGTTTTCGGACCAAGG
AAGCTCATCATAATCTCCAACTCGGCGGGCACTCTTGACGATTCTGGTCA
CGCAGCCGCTATTCGGATTGAATCGAGTTTGGGCGTGCCTGTCTTACGGC
ATGCGGTCAAAAAACCTGGGGCGATAccggaggtgctggagcaTTTTAAG
AAAGAATGCGGCCCTGATACAACGTATGAAGACTTGTGTATCATTGGGGA
CCGGCTCTTGACCGATGTAATGTGGGGAAATTTCGCAGGCATGTTGACGG
TGCACACGCAAATCTTGACACCAGAAGGAGATAATAAAGTGGCGGCAATT
GTCAGAAGACTTGAAAATGGATTCAGTCGGATTTTGAGTCCGCATTGGTC
TGCTCCTTCGCATCCTGCAATGGGTAAAAAGGTCGTCGTCggcagcggag
ggggggaagggaaaggagggagggggggaggagGGCCCTTGCCCCGAATC
CCATCTACACACGCAGGGGTACCCGCCTCGCAGGAGATCGGCAGTGTGGG
TCTCCAGCTCTACCGCCGCACGGAAGGAAGCAAAGCAGCCGAGGCCAGGT
CCTAGATGTCATCAGTCACTATCATTCATTTCAACACATGCAGGCCTATA
AAGACGTTTATGCGGGACAGTGTGGCTCTGGTGTTACTCTGGCTCCTTCT
TGTTGCACTAATCCATAGTGGGATTTCGTGGTCGTCGTCTGGTACACTTC
TGTCCAAAGCCTTCAGGCCGAATAGTGAACACCTCCCCctgtctcgtcct
cgtcgtcatctCGGCTTTGGGCCCCCAACGAGTGTAGTTATGGTTCAAAG
CCTTAATCTTCAAGGCGTCCTTGCGATCGGCCAGGTCATTCGCAATCCTT
CACTCATGCTACCGCACGTCTCAGTCAAACATATCGGTTTCTTGGACTTT
GAACTTTTGCGCCAAGCTGGCATCAAAGGCGTCATCTTCGACAAAGACAA
TACCATCACCGCCCCCTACGTCGACGAGGTGCACGAACAAGTAGCTGGCG
CTTTTGAAACGTCGAAACGCGTTTTCGGACCAAGGAAGCTCATCATAATC
TCCAACTCGGCGGGCACTCTTGACGATTCTGGTCACGCAGCCGCTATTCG
GATTGAATCGAGTTTGGGCGTGCCTGTCTTACGGCATGCGGTCAAAAAAC
CTGGGGCGATAccggaggtgctggagcaTTTTAAGAAAGAATGCGGCCCT
GATACAACGTATGAAGACTTGTGTATCATTGGGGACCGGCTCTTGACCGA
TGTAATGTGGGGAAATTTCGCAGGCATGTTGACGGTGCACACGCAAATCT
TGACACCAGAAGGAGATAATAAAGTGGCGGCAATTGTCAGAAGACTTGAA
AATGGATTCAGTCGGATTTTGAGTCCGCATTGGTCTGCTCCTTCGCATCC
TGCAATGGGTAAAAAGGTCGTCGTCggcagcggagggggggaagggaaag
gagggagggggggaggagGGCCCTTGCCCCGAATCCCATCTACACACGCA
GGGGTACCCGCCTCGCAGGAGATCGGCAGTGTGGGTCTCCAGCTCTACCG
CCGCACGGAAGGAAGCAAAGCAGCCGAGGCCAGGTCCTAG

Synonyms

Publications