EWM27251.1, cds3403 (CDS) Nannochloropsis gaditana

Overview
NameEWM27251.1
Unique Namecds3403
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002461.1:353546..353909 +
Alignment locationCM002461.1:354198..354746 +
Alignment locationCM002461.1:355489..355545 +
Alignment locationCM002461.1:355767..355831 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM27251.1
Producthaloacid dehalogenase superfamily protein
Orig transcript idgnl|cribi|Naga_100038g4.7706.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002461.1supercontigCM002461.1:353546..353909 +
CM002461.1supercontigCM002461.1:354198..354746 +
CM002461.1supercontigCM002461.1:355489..355545 +
CM002461.1supercontigCM002461.1:355767..355831 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: INTERPRO
TermDefinition
IPR023214HAD-like_dom
IPR027706PGP_Pase
IPR010021HAD_ppase_YqeG-like
Homology
BLAST of EWM27251.1 vs. NCBI_GenBank
Match: gi|585109432|gb|EWM27251.1| (haloacid dehalogenase superfamily protein [Nannochloropsis gaditana])

HSP 1 Score: 696.427 bits (1796), Expect = 0.000e+0
Identity = 344/344 (100.00%), Postives = 344/344 (100.00%), Query Frame = 0
Query:    1 MSSVTIIHFNTCRPIKTFMRDSVALVLLWLLLVALIHSGISWSSSGTLLSKAFRPNSEHLPLSRPRRHLGFGPPTSVVMVQSLNLQGVLAIGQVIRNPSLMLPHVSVKHIGFLDFELLRQAGIKGVIFDKDNTITAPYVDEVHEQVAGAFETSKRVFGPRKLIIISNSAGTLDDSGHAAAIRIESSLGVPVLRHAVKKPGAIPEVLEHFKKECGPDTTYEDLCIIGDRLLTDVMWGNFAGMLTVHTQILTPEGDNKVAAIVRRLENGFSRILSPHWSAPSHPAMGKKVVVGSGGGEGKGGRGGGGPLPRIPSTHAGVPASQEIGSVGLQLYRRTEGSKAAEARS 344
            MSSVTIIHFNTCRPIKTFMRDSVALVLLWLLLVALIHSGISWSSSGTLLSKAFRPNSEHLPLSRPRRHLGFGPPTSVVMVQSLNLQGVLAIGQVIRNPSLMLPHVSVKHIGFLDFELLRQAGIKGVIFDKDNTITAPYVDEVHEQVAGAFETSKRVFGPRKLIIISNSAGTLDDSGHAAAIRIESSLGVPVLRHAVKKPGAIPEVLEHFKKECGPDTTYEDLCIIGDRLLTDVMWGNFAGMLTVHTQILTPEGDNKVAAIVRRLENGFSRILSPHWSAPSHPAMGKKVVVGSGGGEGKGGRGGGGPLPRIPSTHAGVPASQEIGSVGLQLYRRTEGSKAAEARS
Sbjct:    1 MSSVTIIHFNTCRPIKTFMRDSVALVLLWLLLVALIHSGISWSSSGTLLSKAFRPNSEHLPLSRPRRHLGFGPPTSVVMVQSLNLQGVLAIGQVIRNPSLMLPHVSVKHIGFLDFELLRQAGIKGVIFDKDNTITAPYVDEVHEQVAGAFETSKRVFGPRKLIIISNSAGTLDDSGHAAAIRIESSLGVPVLRHAVKKPGAIPEVLEHFKKECGPDTTYEDLCIIGDRLLTDVMWGNFAGMLTVHTQILTPEGDNKVAAIVRRLENGFSRILSPHWSAPSHPAMGKKVVVGSGGGEGKGGRGGGGPLPRIPSTHAGVPASQEIGSVGLQLYRRTEGSKAAEARS 344          
BLAST of EWM27251.1 vs. NCBI_GenBank
Match: gi|1026969507|ref|XP_016609396.1| (HAD phosphatase, family IIIA [Spizellomyces punctatus DAOM BR117] >gi|907095703|gb|KND01357.1| HAD phosphatase, family IIIA [Spizellomyces punctatus DAOM BR117])

HSP 1 Score: 200.29 bits (508), Expect = 1.115e-59
Identity = 101/212 (47.64%), Postives = 143/212 (67.45%), Query Frame = 0
Query:   79 MVQSLNLQGVLAIGQVIRNPSLMLPHVSVKHIGFLDFELLRQAGIKGVIFDKDNTITAPYVDEVHEQVAGAFETSKRVFGPRKLIIISNSAGTLDDSGHAAAIRIESSLGVPVLRHAVKKPGAIPEVLEHF--KKECGPDTTYEDLCIIGDRLLTDVMWGNFAGMLTVH-TQILTPEGDNKVAAIVRRLENGFSRILSPH-WSAPSHPAMGK 286
            MVQSLN   + +IG+++R+PSL++PH+SV  I +++F  L+ AGI+ V+FDKDNTITAPYV++VH   A ++E+ K  FG  +L+I+SNSAGT DD GH  A  +E++LG+PVLRH +KKP     +  +F     C        + ++GDR  TD+++GN  GMLTVH T+I+T EGDNK+AA++R+LE      L     S P HPA  K
Sbjct:    1 MVQSLNFSSLASIGKIVRSPSLLIPHLSVPDIRYINFMALKAAGIRAVVFDKDNTITAPYVEQVHPTFAKSWESCKDTFGQDRLLIVSNSAGTPDDVGHKKAATVEAALGIPVLRHTLKKPAGGDALSSYFGCPSHC--------IAVVGDRAFTDIVYGNLNGMLTVHVTKIVTEEGDNKIAALIRKLEYPLVNWLRQRGLSPPHHPAFEK 204          
BLAST of EWM27251.1 vs. NCBI_GenBank
Match: gi|299470088|emb|CBN79265.1| (haloacid dehalogenase (HAD) superfamily protein [Ectocarpus siliculosus])

HSP 1 Score: 197.208 bits (500), Expect = 2.615e-57
Identity = 104/189 (55.03%), Postives = 131/189 (69.31%), Query Frame = 0
Query:   79 MVQSLNLQGVLAIGQVIRNPSLMLPHVSVKHIGFLDFELLRQAGIKGVIFDKDNTITAPYVDEVHEQVAGAFETSKRVFGPRKLIIISNSAGTLDDSGHAAAIRIESSLGVPVLRHAVKKPGAIPEVLEHF--KKECGPDTTYEDLCIIGDRLLTDVMWGNFAGMLTVHTQILTPEGDNKVAAIVRRLE 265
            M QS N Q V ++ +V+R+P+L +PH+S+ HIG LDFE L+  G KGVIFDKDNT+TAPY D VH  V    +    VF    + I+SNSAGT DD  +A AIRIE++LG+PVLRH  KKPG I +VL  F  K   G     ++LC +GDRLLTDV++GN  GMLTVHTQ LT +GDN+ AA+ R LE
Sbjct:   74 MGQSFNAQAVSSMSRVVRHPALAVPHLSLAHIGRLDFEGLKAMGCKGVIFDKDNTLTAPYEDTVHPLVEEGLKRCMEVF-EGSVCIMSNSAGTRDDPDYADAIRIETALGIPVLRHDEKKPGGIADVLAFFEGKDPEGGTVRLDELCFVGDRLLTDVVFGNLHGMLTVHTQPLTLKGDNRPAAVFRYLE 261          
BLAST of EWM27251.1 vs. NCBI_GenBank
Match: gi|551581975|ref|XP_005776467.1| (hypothetical protein EMIHUDRAFT_101242 [Emiliania huxleyi CCMP1516] >gi|485628571|gb|EOD24038.1| hypothetical protein EMIHUDRAFT_101242 [Emiliania huxleyi CCMP1516])

HSP 1 Score: 189.119 bits (479), Expect = 2.668e-55
Identity = 112/222 (50.45%), Postives = 138/222 (62.16%), Query Frame = 0
Query:   79 MVQSLNLQGVLAIGQVI-RNPSLMLPHVSVKHIGFLDFELLRQAGIKGVIFDKDNTITAPYVDEVHEQVAGAFETSKRVFGPRKLIIISNSAGTLDDSGHAAAIRIESSLGVPVLRHAVKKPGAIPEVLEHFKKECGPDTTYEDLCIIGDRLLTDVMWGNFAGMLTVHTQILTPEGDNKVAAIVRRLENGF-SRILSPHWSAPSHPAMGKKVVVGSGGGEGK 298
            MVQSLNL  V    +VI R P+L LPH  V+ I  LDF  LR+AG  GVIFDKDNT+TAPY DEVH ++AG+       FG  ++ ++SNSAGT DD G  AA  +E++LGV VLR   KKP  I  V  HF  +C  D T   L ++GDR LTDV++GN  GMLTVHTQ LT EGDN+VA  +RR E+   +R +     AP HP        G GG  G+
Sbjct:    1 MVQSLNLAAVRTTARVILREPALALPHQRVRDISELDFAELREAGCHGVIFDKDNTLTAPYSDEVHPRLAGSLRRCVETFGAERVAVLSNSAGTPDDPGGVAADALEAALGVHVLRRRHKKPRGIESVQRHF--QC--DGTA--LLMVGDRYLTDVVFGNMHGMLTVHTQQLTTEGDNRVAQAMRRAEDWLVARYVRRGVRAPPHPLALNS--WGPGGARGR 214          
BLAST of EWM27251.1 vs. NCBI_GenBank
Match: gi|831769435|ref|XP_012752705.1| (hypothetical protein SAMD00019534_075540 [Acytostelium subglobosum LB1] >gi|735853337|dbj|GAM24379.1| hypothetical protein SAMD00019534_075540 [Acytostelium subglobosum LB1])

HSP 1 Score: 180.259 bits (456), Expect = 5.695e-52
Identity = 83/209 (39.71%), Postives = 127/209 (60.77%), Query Frame = 0
Query:   79 MVQSLNLQGVLAIGQVIRNPSLMLPHVSVKHIGFLDFELLRQAGIKGVIFDKDNTITAPYVDEVHEQVAGAFETSKRVFGPRKLIIISNSAGTLDDSGHAAAIRIESSLGVPVLRHAVKKPGAIPEVLEHFKKECGPDTTYEDLCIIGDRLLTDVMWGNFAGMLTVHTQILTPEGDNKVAAIVRRLENGFSRILSPHWSAPSHPAMGKK 287
            MVQS N   + ++G+V  N SL++PH+ ++ +  +DF  LR  G   V+FDKDNT+T PY D V+   + A E ++RVFGP+ + ++SNSAG+ DD     A R+E  L +PV++H  KKP  I  V++HF      DT    + ++GDR LTD+++GN  GM+T++T  +T  GDN    ++R  E  F      H++AP HP   ++
Sbjct:    1 MVQSFNFAAMRSLGKVFYNRSLVIPHLMLQDVRSIDFARLRSMGFDAVLFDKDNTLTEPYADHVYAPFSEALEHARRVFGPKGIAVLSNSAGSSDDHDFVEATRLERELCIPVIKHGTKKPEGIEAVIKHFN-----DTEPSRIIMVGDRFLTDILFGNLYGMMTIYTSPITSVGDNGAVKLIRDKEKSFVMYNKQHYNAPVHPLFNEE 204          
BLAST of EWM27251.1 vs. NCBI_GenBank
Match: gi|1160555231|ref|XP_020436535.1| (hypothetical protein PPL_02453 [Polysphondylium pallidum PN500] >gi|281210254|gb|EFA84421.1| hypothetical protein PPL_02453 [Polysphondylium pallidum PN500])

HSP 1 Score: 175.252 bits (443), Expect = 5.444e-50
Identity = 82/208 (39.42%), Postives = 126/208 (60.58%), Query Frame = 0
Query:   79 MVQSLNLQGVLAIGQVIRNPSLMLPHVSVKHIGFLDFELLRQAGIKGVIFDKDNTITAPYVDEVHEQVAGAFETSKRVFGPRKLIIISNSAGTLDDSGHAAAIRIESSLGVPVLRHAVKKPGAIPEVLEHFKKECGPDTTYEDLCIIGDRLLTDVMWGNFAGMLTVHTQILTPEGDNKVAAIVRRLENGFSRILSPHWSAPSHPAMGK 286
            MVQ  N + + +IG++I N SL++PH+  K +  +DF+ L+Q G   V+FDKDNT+T PY D ++E    A +  + VFG + + I+SNSAG+ DD     A R+ES+LG+ VL+H  KKP  I +V EHF  +       + + +IGDR  TDV++GN  GMLT+ T+ +T +GDN +  ++R  E+ +      ++  P H    K
Sbjct:    1 MVQGFNFEAIKSIGKIIGNRSLLIPHLEFKDVRSIDFQRLKQMGFSAVLFDKDNTLTEPYADVIYEPFREAVDRCRGVFGEQSIAILSNSAGSSDDVDFREATRLESTLGLSVLKHGTKKPNGIEKVKEHFHTD-----NLQSIVMIGDRYSTDVVFGNLYGMLTIFTKPITSKGDNNIVKLIRDKESRYVDYCKNYYEPPKHSLFDK 203          
BLAST of EWM27251.1 vs. NCBI_GenBank
Match: gi|1183507460|gb|ORZ30748.1| (mitochondrial PGP phosphatase-domain-containing protein [Catenaria anguillulae PL171])

HSP 1 Score: 172.17 bits (435), Expect = 4.709e-49
Identity = 91/189 (48.15%), Postives = 120/189 (63.49%), Query Frame = 0
Query:   79 MVQSLNLQGVLAIGQVIRNPSLMLPHVSVKHIGFLDFELLRQAGIKGVIFDKDNTITAPYVDEVHEQVAGAFETSKRVFGPRKLIIISNSAGTLDDSGHAAAIRIESSLGVPVLRHAVKKPGAIPEVLEHFKKECGPDTTYEDLCIIGDRLLTDVMWGNFAGMLTVHT-QILTPEGDNKVAAIVRRLEN 266
            MVQSLN  G+ A+  VIRNPSL  P  SV  I  ++F+ L+Q+GIK ++FDKDN +TAPY D+ H  V+ +F++   +FG   + I SNSAGT DD     A RIESSLGVPVL H  KKP     V++HF  +    T    +  +GDRLLTDV++ N  G  +VHT ++ T +GDN  A  +RR EN
Sbjct:    1 MVQSLNFAGIRALWWVIRNPSLARPCESVPDISHVNFDKLKQSGIKCLVFDKDNCLTAPYADQAHPTVSKSFQSCVELFGRDNVAIYSNSAGTPDDKDGVQAKRIESSLGVPVLYHTDKKPAGGESVVQHFSLKSP--TQPRQIAFLGDRLLTDVVFANRNGFYSVHTFRVFTEQGDNFFALWIRRFEN 187          
BLAST of EWM27251.1 vs. NCBI_GenBank
Match: gi|219111027|ref|XP_002177265.1| (predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1] >gi|217411800|gb|EEC51728.1| predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 170.629 bits (431), Expect = 1.654e-48
Identity = 88/192 (45.83%), Postives = 122/192 (63.54%), Query Frame = 0
Query:   79 MVQSLNLQGVLAIGQVIRNPSLMLPHVSVKHIGFLDFELLRQAGIKGVIFDKDNTITAPYVDEVHEQVAGAFETSKRVFGPRKLIIISNSAGTLDDSGHAAAIRIESSLGVPVLRHAVKKPGAIPEVLEHFKKECGPDTTYEDLCIIGDRLLTDVMWGNFAGMLTVHTQILTP----EGDNKVAAIVRRLEN 266
            MVQS+N + +L +  V+R P LM+P +SV  +  ++F  L+  GI  V+FDKDNT+T+PY +E+H   A   + + RVFG  ++ I+SNSAGT DD  +  AIRIE+ LG+ V+RH  KKPG + EVL HF       T    LC++GDRLLTD+++GN  GMLTVH   L        DN  A ++R +EN
Sbjct:    1 MVQSINTKALLTMASVLRRPGLMVPQLSVATVSQMNFTALKDHGIAAVMFDKDNTLTSPYENEIHPLAAQGIDEALRVFGRDRVAILSNSAGTKDDVDYTDAIRIENVLGIQVIRHEEKKPGGLDEVLAHFDL-----TDPATLCMVGDRLLTDIVFGNLHGMLTVHCLPLCSGSENSKDNWTAKLLRPMEN 187          
BLAST of EWM27251.1 vs. NCBI_GenBank
Match: gi|661188997|emb|CDH48875.1| (haloacid dehalogenase superfamily protein [Lichtheimia corymbifera JMRC:FSU:9682])

HSP 1 Score: 170.244 bits (430), Expect = 5.408e-48
Identity = 94/207 (45.41%), Postives = 129/207 (62.32%), Query Frame = 0
Query:   79 MVQSLNLQGVLAIGQVIRNPSLMLPHVSVKHIGFLDFELL-RQAGIKGVIFDKDNTITAPYVDEVHEQVAGAFETSKRVFGPRKLIIISNSAGTLDDSGHAAAIRIESSLGVPVLRHAVKKPGAIPEVLEHFKKECGPDTTYEDLCIIGDRLLTDVMWGNFAGMLTVHT-QILTPEGDNKVAAIVRRLENGFSRIL-SPHWSAPSHP 282
            MVQSLN+ G++   +++ NPSL +PH+ V  I  + FE L RQ GI+ + FDKDN +TAPYV  +H     A+   K  FGP K++I+SNSAGT DD  HA A +++ +LGVPVLRH  KKP     +  H           + +  +GDR+LTDV++GN  G  T+ T +I+T  GDNK A I+RR E+G  R+L S +   PSHP
Sbjct:    1 MVQSLNVSGIVNAFRLLWNPSLAVPHLIVNDIRNIHFEQLKRQGGIQAMGFDKDNCLTAPYVPHIHPPFEKAWAVCKETFGPDKIVIVSNSAGTPDDKDHAEATKLQDALGVPVLRHEEKKPSGGAALARHLHP-----IPVDKIAFVGDRILTDVVFGNLNGNFTIWTRKIVTETGDNKAALILRRFEHGIIRLLQSLNVKPPSHP 202          
BLAST of EWM27251.1 vs. NCBI_GenBank
Match: gi|330801077|ref|XP_003288557.1| (hypothetical protein DICPUDRAFT_152793 [Dictyostelium purpureum] >gi|325081407|gb|EGC34924.1| hypothetical protein DICPUDRAFT_152793 [Dictyostelium purpureum])

HSP 1 Score: 164.851 bits (416), Expect = 4.934e-46
Identity = 80/191 (41.88%), Postives = 113/191 (59.16%), Query Frame = 0
Query:   79 MVQSLNLQGVLAIGQVIRNPSLMLPHVSVKHIGFLDFELLRQAGIKGVIFDKDNTITAPYVDEVHEQVAGAFETSKRVFGPRKLIIISNSAGTLDDS-GHAAAIRIESSLGVPVLRHAVKKPGAIPEVLEHFKKECGPDTTYEDLCIIGDRLLTDVMWGNFAGMLTVHTQILTPEGDNKVAAIVRRLENGF 268
            MVQS N + +  +  V RN SL++PH+  K I  +DF+ L   G KGV+FDKDNT+T PY D ++     + E  K +FG   + IISNSAG+ DD   +  A  IE +LG+ VL+H  KKP  I  V  HFK      T   +L ++GDR LTD+++GN  GM T++T  +T +GDN    ++R  E  +
Sbjct:    1 MVQSFNFEAIKCLKHVYRNKSLIVPHLEFKDIRGIDFKQLHDKGFKGVLFDKDNTLTEPYADTIYNPFKESIEKCKEIFGEENIAIISNSAGSSDDYPDYEKADHIEKNLGIKVLKHNTKKPDGIDSVTNHFK------TDPSNLVMVGDRYLTDILFGNLYGMFTIYTNPITSKGDNFFVKLIRDKERNY 185          
The following BLAST results are available for this feature:
BLAST of EWM27251.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585109432|gb|EWM27251.1|0.000e+0100.00haloacid dehalogenase superfamily protein [Nannoch... [more]
gi|1026969507|ref|XP_016609396.1|1.115e-5947.64HAD phosphatase, family IIIA [Spizellomyces puncta... [more]
gi|299470088|emb|CBN79265.1|2.615e-5755.03haloacid dehalogenase (HAD) superfamily protein [E... [more]
gi|551581975|ref|XP_005776467.1|2.668e-5550.45hypothetical protein EMIHUDRAFT_101242 [Emiliania ... [more]
gi|831769435|ref|XP_012752705.1|5.695e-5239.71hypothetical protein SAMD00019534_075540 [Acytoste... [more]
gi|1160555231|ref|XP_020436535.1|5.444e-5039.42hypothetical protein PPL_02453 [Polysphondylium pa... [more]
gi|1183507460|gb|ORZ30748.1|4.709e-4948.15mitochondrial PGP phosphatase-domain-containing pr... [more]
gi|219111027|ref|XP_002177265.1|1.654e-4845.83predicted protein, partial [Phaeodactylum tricornu... [more]
gi|661188997|emb|CDH48875.1|5.408e-4845.41haloacid dehalogenase superfamily protein [Lichthe... [more]
gi|330801077|ref|XP_003288557.1|4.934e-4641.88hypothetical protein DICPUDRAFT_152793 [Dictyostel... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna3412rna3412Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications