rna3411, rna3411 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna3411
Unique Name	rna3411
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	611
Alignment location	CM002461.1:349982..353033 +

Link to JBrowse

Properties


Property Name	Value
Product	dead-box atp-dependent rna helicase
Orig transcript id	gnl\|cribi\|Naga_100038g3.7716.mrna
Orig protein id	gnl\|cribi\|Naga_100038g3.7716
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002461.1	supercontig	CM002461.1:349982..353033 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100038g3	gene3285	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna3411	rna3411-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM27261.1	cds3402	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002461.1:349982..353033+
coding sequence from alignment at CM002461.1:349982..353033+

mRNA sequence

>rna3411 ID=rna3411|Name=rna3411|organism=Nannochloropsis gaditana|type=mRNA|length=611bp
ACGCTTCATTCCCGCTTTAAAATGACATGGAGGAAAGACCACGACTTGTT
GCCTCCTTAACATTGAATAGTATTCAGGCTGTTCTCCAGGCCCCTTCGAA
GGTAAGTGAAACATTCTTGGACTAGAAAACTGCTTTCTAGGGCGAAAAGA
AACCAGTAGATGAAGACAAAAAAGGACCACGACCGTGGTAGTTTGTTCAG
CAATTGCTTTTCTACGGATTATACAGAGAACGCGTTAGGATGGCGGCAGC
GTTTCGATTACCGGTTTTGGAGCACTGTCGACGTCACAGCGAGTAAGCTG
CACAGCCCTCAGAGGACTTATTGCTTGAGCGATCATCGCATCCCTCACAT
ATTACCTTTTGTCTTCATTTACTTCTTTCTTATCACCCACCAACATGATT
TCAACTTCAGCTCGCATTCTGTGGATGTTGGTGGGGGCGTGTTGTACATC
GTTTATCTTATGAAGTGCTGAAAAGACAACAGTAGTTGAATCTTTCGCGA
CTTCACATCAGTGTAAAAGGCAACCCATGACCATTGAATCCTAGCAAACT
TTCAATAATTTACCTGTTATACCGACAAGTAGAGGCTAGACATTTAAGAA
GAAGCATTTTC

protein sequence of rna3411

>rna3411-protein ID=rna3411-protein|Name=rna3411|organism=Nannochloropsis gaditana|type=polypeptide|length=489bp
MAAVAAMEATAVGAGHYGGGGGGYGGGGGYGGGRGGGDRMGGLGAGLRSI
QWDLSKLPPFEKNFYIEHPDVSKRDEGDAARWRAKHVITVQGHGIPKPVF
TFEEASMPEYVLQEVMKQGFDRPTPIQSQGWPMALLGRDMIGISATGSGK
TLAFLLPAMIHINAQPYLESGDGPIVLVLAPTRELALQIKQECDKFGRSS
SIKNTCVYGGVPKREQVYDLKRGMEIVVATPGRLIDHLESGMTNLRRVTY
LVLDEADRMLDMGFEPQLRSIVSQIRPDRQTLMWSATWPKEVQSLARDFL
KDPYQVTVGSLDLAANKDIKQEVMVCEDRDKYGLLLRALKENNTGGKVLV
FVETKRGCDQLQRSLQMDGFSAVAIHGDKSQQDRDWTLRQFKEGRSNILV
ATDVAARGLDVKDIQMVANFDFPNNMEDYIHRVGRTGRAGAKGYALSFVT
QKHARISRELAKILEESGNQVPAALRGMGGGGGYGRGRY

mRNA from alignment at CM002461.1:349982..353033+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna3411 ID=rna3411|Name=rna3411|organism=Nannochloropsis gaditana|type=mRNA|length=3052bp|location=Sequence derived from alignment at CM002461.1:349982..353033+ (Nannochloropsis gaditana)
ATGGCGGCGGTAGCAGGTGCGTAGGTCACTCCTGCGCGCCAAACATGATT
TTTGTCACAACTTTTAACGGCTCACAAACCCTCCTTTATGTCCATACCCA
ACGATTCTTGAACAAACACTGGCAGCTATGGAAGCTAcggcggtgggggc
aggTCAGTTCATCAAAAATGAATCGCACTTATGTCCTGAATATTATGCAC
GCTTTCTTTCAGATGCTCTAAGTATGGTTGTCCTGTCTTACTTAATTTCT
TCTCATAAACATTCGTACAGCtatggcgggggaggaggcggctacggcgg
aggtggaggttaCGGGGGTGGGCGCGGGGGTGGCGATCGTATGGGAGGCT
TGGGCGCTGGCCTCCGCAGCATTCAGTGGGACCTGAGCAAGCTGCCCCCG
TTCGAAAAGAACTTCTACATCGAGCACCCCGACGTCTCCAAgcgggacga
aggggacgCGGCGCGGTGGCGGGCGAAGCACGTAATCACCGTCCAGGGGC
ACGGCATTCCCAAGCCCGTCTTTACGTTCGAGGAGGCCTCCATGCCCGAG
TACGTCCTTCAGGAGGTGATGAAGCAAGGCTTCGACAGGCCCACCCCTAT
TCAGTCTCAGGGCTGGCCGATGGCGTTGCTGGGACGGGACATGATCGGGA
TCTCCGCCACGGGCTCGGGCAAGACGTTggccttcctgctcccagCCATG
ATCCACATCAACGCGCAGGTCAAGAGTtattttttttgttttcttttgCC
CACTGTTCTTGGCCGTGAGATAACTGTTAGGACAAAGGAGTGAGACGTTC
CGTAGGACTGAGTAGGATCGATGTGTCCGGGCCAAGATGGGCCACAGCCT
GAGTGCATGCCTGTCGAGCCCCTGTGTGTCGGCCAAGCGGGGCATGGGTC
GTTGCGTCAACCCCACGCCCTTGCGGACGGGATGAGTCCGTGTGGCTAGA
GCTGCCCAGTCCCTCACTCATGGACTCAGGCGGGAAAGTGGAAGGCAATG
GTGGTGGCCCAGATGCTCCTTTGCAGGCGCATTTGGGGTGTTCCCGCGTT
CGAGGCACtgcaggggaaaggagcgacATAAGGATGGGACGGacgccctg
ccccttgcGTTTCTctatctcttcctctttggccgtcccctcccctcttt
ttgcCACCAGAGCTCCATGACGAGCgttggcagcggcggcaacGACGATG
GCGTCCGTTGGTGTACGGCTTGAGGccgctctctttcctccgcgcctttt
ccttctggAATTCGAGTGCGGAGGCGAGGCCTTTTTCATCTTGTCCACTG
CCCTGCAATTTCCTTTGAATTGTGCCACCGCCATCCTCGTGGCCtcaagc
cctctccctcattttcCTCAGCTCAGTACGTACCGCGTGGtgtttctcgc
cctcccttttaATCTCCGTGACGATTgtctcttctttctgctcccTTTTA
TCCCTTCTTTTCGTTTCGAAGAGGACGGGTAGACTTTGGGTGTAGTCAGA
GGCGACCAAGAATCATgcagagaagagaaggagggaatgtgAAACGCCTG
GTGCCTACATAGGGCGACAAAGGACGATGCGATTGAGAGGAGGGGTCCCG
TGGCCGTCTTGTGCGTCACGGGTGTGGATGGGACCTCCCCCATGCGAGCT
TGCCTTTTGTGTGTAAGGGGCAGGGAGCGGACGGTGTAAAGAGGTTGCCT
TTCGCATGCGTCGTGTTGTTTTGAGGGGACGAGACAGGAGGGTGTGGAAA
GAGGCGGGAGGTCCGAGACTAGTGACTATAAAGGAGAGTGAGAGGAccga
ggcgaagggggaaagcgatgTTTGAGAAAGCTCGTCGGTTTAGCTGGCTT
GCGGTACCCGTGGCATGTTCGGTAGATTATTATTTCGCGCGCACGGACTC
GTTCGCTTTTCTGGCCAGGACGCGTGGTCCCCTGTTCCCGTGCAGATTGA
TGCTTATCTTGTGGTTTcccacttttttttttttccttacTCATTTTTTT
GCCATGATGGGAGAAAGAGATTTGGctcatctttttccttctctttccgt
gTGTCCCATCCCCTCTTAACACCTCAGCCCTACCTCGAATCTGGGGACGG
TCCAATCGTGCTGGTGCTTGCTCCCACACGGGAGCTTGCGCTGCAGATTA
AACAGGAATGCGACAAGTTTGgccgttcctcctccatcaaaaaCACGTGT
GTGTACGGCGGAGTGCCCAAGCGCGAGCAAGTCTACGACCTGAAACGCGG
GATGGAGATTGTCGTGGCCACGCCCGGGCGCCTGATCGACCACCTGGAGA
GCGGCATGACCAACCTAAGGCGCGTCACGTACCTGGTCTTGGACGAGGCT
GACCGCATGTTGGACATGGGCTTCGAGCCCCAGCTACGGTCCATTGTCTC
CCAGATCCGCCCGGACAGGCAGACGCTCATGTGGAGTGCGACGTGGCCGA
AAGAGGTGCAGAGCCTGGCCCGGGACTTCCTCAAGGACCCTTACCAGGTG
ACTGTGGGCTCCTTGGACCTGGCGGCGAACAAGGACATCAAGCAGGAGGT
GATGGTGTGCGAGGACCGGGACAAATATGGGCTGCTTTTGCGGGCATTAA
AGGAGAACAACACTGGTGGGAAGGTGCTGGTGTTCGTAGAAACGAAGCGG
GGCTGCGACCAACTTCAGCGCTCCTTACAAATGGACGGGTTCTCGGCCGT
GGCGATCCACGGTGACAAGAGCCAGCAAGACCGGGACTGGACCCTCCGCC
AgttcaaggaggggaggtccAACATTTTGGTGGCTACGGACGTAGCGGCG
CGAGGCTTGGACGTGAAAGATATCCAGATGGTGGCTAATTTTGACTTCCC
CAACAATATGGAGGATTATATTCATCGTGTCGGGCGCACGGGAAGGGCGG
GTGCCAAAGGTTACGCCCTCTCATTTGTGACGCAAAAACATGCCAGGATT
TCACGGGAGCTCGCGAAGATTCTGGAGGAGTCGGGAAACCAGGTTCCTGC
TGCCCTGCGTGGGatgggtggcggaggaggttatgGCAGGGGCCGGTACT
GA

Coding sequence (CDS) from alignment at CM002461.1:349982..353033+

>rna3411 ID=rna3411|Name=rna3411|organism=Nannochloropsis gaditana|type=CDS|length=5880bp|location=Sequence derived from alignment at CM002461.1:349982..353033+ (Nannochloropsis gaditana)
ATGGCGGCGGTAGCAGCTATGGAAGCTAcggcggtgggggcaggTCACta
tggcgggggaggaggcggctacggcggaggtggaggttaCGGGGGTGGGC
GCGGGGGTGGCGATCGTATGGGAGGCTTGGGCGCTGGCCTCCGCAGCATT
CAGTGGGACCTGAGCAAGCTGCCCCCGTTCGAAAAGAACTTCTACATCGA
GCACCCCGACGTCTCCAAgcgggacgaaggggacgCGGCGCGGTGGCGGG
CGAAGCACGTAATCACCGTCCAGGGGCACGGCATTCCCAAGCCCGTCTTT
ACGTTCGAGGAGGCCTCCATGCCCGAGTACGTCCTTCAGGAGGTGATGAA
GCAAGGCTTCGACAGGCCCACCCCTATTCAGTCTCAGGGCTGGCCGATGG
CGTTGCTGGGACGGGACATGATCGGGATCTCCGCCACGGGCTCGGGCAAG
ACGTTggccttcctgctcccagCCATGATCCACATCAACGCGCAGCCCTA
CCTCGAATCTGGGGACGGTCCAATCGTGCTGGTGCTTGCTCCCACACGGG
AGCTTGCGCTGCAGATTAAACAGGAATGCGACAAGTTTGgccgttcctcc
tccatcaaaaaCACGTGTGTGTACGGCGGAGTGCCCAAGCGCGAGCAAGT
CTACGACCTGAAACGCGGGATGGAGATTGTCGTGGCCACGCCCGGGCGCC
TGATCGACCACCTGGAGAGCGGCATGACCAACCTAAGGCGCGTCACGTAC
CTGGTCTTGGACGAGGCTGACCGCATGTTGGACATGGGCTTCGAGCCCCA
GCTACGGTCCATTGTCTCCCAGATCCGCCCGGACAGGCAGACGCTCATGT
GGAGTGCGACGTGGCCGAAAGAGGTGCAGAGCCTGGCCCGGGACTTCCTC
AAGGACCCTTACCAGGTGACTGTGGGCTCCTTGGACCTGGCGGCGAACAA
GGACATCAAGCAGGAGGTGATGGTGTGCGAGGACCGGGACAAATATGGGC
TGCTTTTGCGGGCATTAAAGGAGAACAACACTGGTGGGAAGGTGCTGGTG
TTCGTAGAAACGAAGCGGGGCTGCGACCAACTTCAGCGCTCCTTACAAAT
GGACGGGTTCTCGGCCGTGGCGATCCACGGTGACAAGAGCCAGCAAGACC
GGGACTGGACCCTCCGCCAgttcaaggaggggaggtccAACATTTTGGTG
GCTACGGACGTAGCGGCGCGAGGCTTGGACGTGAAAGATATCCAGATGGT
GGCTAATTTTGACTTCCCCAACAATATGGAGGATTATATTCATCGTGTCG
GGCGCACGGGAAGGGCGGGTGCCAAAGGTTACGCCCTCTCATTTGTGACG
CAAAAACATGCCAGGATTTCACGGGAGCTCGCGAAGATTCTGGAGGAGTC
GGGAAACCAGGTTCCTGCTGCCCTGCGTGGGatgggtggcggaggaggtt
atgGCAGGGGCCGGTACTGAATGGCGGCGGTAGCAGCTATGGAAGCTAcg
gcggtgggggcaggTCACtatggcgggggaggaggcggctacggcggagg
tggaggttaCGGGGGTGGGCGCGGGGGTGGCGATCGTATGGGAGGCTTGG
GCGCTGGCCTCCGCAGCATTCAGTGGGACCTGAGCAAGCTGCCCCCGTTC
GAAAAGAACTTCTACATCGAGCACCCCGACGTCTCCAAgcgggacgaagg
ggacgCGGCGCGGTGGCGGGCGAAGCACGTAATCACCGTCCAGGGGCACG
GCATTCCCAAGCCCGTCTTTACGTTCGAGGAGGCCTCCATGCCCGAGTAC
GTCCTTCAGGAGGTGATGAAGCAAGGCTTCGACAGGCCCACCCCTATTCA
GTCTCAGGGCTGGCCGATGGCGTTGCTGGGACGGGACATGATCGGGATCT
CCGCCACGGGCTCGGGCAAGACGTTggccttcctgctcccagCCATGATC
CACATCAACGCGCAGCCCTACCTCGAATCTGGGGACGGTCCAATCGTGCT
GGTGCTTGCTCCCACACGGGAGCTTGCGCTGCAGATTAAACAGGAATGCG
ACAAGTTTGgccgttcctcctccatcaaaaaCACGTGTGTGTACGGCGGA
GTGCCCAAGCGCGAGCAAGTCTACGACCTGAAACGCGGGATGGAGATTGT
CGTGGCCACGCCCGGGCGCCTGATCGACCACCTGGAGAGCGGCATGACCA
ACCTAAGGCGCGTCACGTACCTGGTCTTGGACGAGGCTGACCGCATGTTG
GACATGGGCTTCGAGCCCCAGCTACGGTCCATTGTCTCCCAGATCCGCCC
GGACAGGCAGACGCTCATGTGGAGTGCGACGTGGCCGAAAGAGGTGCAGA
GCCTGGCCCGGGACTTCCTCAAGGACCCTTACCAGGTGACTGTGGGCTCC
TTGGACCTGGCGGCGAACAAGGACATCAAGCAGGAGGTGATGGTGTGCGA
GGACCGGGACAAATATGGGCTGCTTTTGCGGGCATTAAAGGAGAACAACA
CTGGTGGGAAGGTGCTGGTGTTCGTAGAAACGAAGCGGGGCTGCGACCAA
CTTCAGCGCTCCTTACAAATGGACGGGTTCTCGGCCGTGGCGATCCACGG
TGACAAGAGCCAGCAAGACCGGGACTGGACCCTCCGCCAgttcaaggagg
ggaggtccAACATTTTGGTGGCTACGGACGTAGCGGCGCGAGGCTTGGAC
GTGAAAGATATCCAGATGGTGGCTAATTTTGACTTCCCCAACAATATGGA
GGATTATATTCATCGTGTCGGGCGCACGGGAAGGGCGGGTGCCAAAGGTT
ACGCCCTCTCATTTGTGACGCAAAAACATGCCAGGATTTCACGGGAGCTC
GCGAAGATTCTGGAGGAGTCGGGAAACCAGGTTCCTGCTGCCCTGCGTGG
GatgggtggcggaggaggttatgGCAGGGGCCGGTACTGAATGGCGGCGG
TAGCAGCTATGGAAGCTAcggcggtgggggcaggTCACtatggcggggga
ggaggcggctacggcggaggtggaggttaCGGGGGTGGGCGCGGGGGTGG
CGATCGTATGGGAGGCTTGGGCGCTGGCCTCCGCAGCATTCAGTGGGACC
TGAGCAAGCTGCCCCCGTTCGAAAAGAACTTCTACATCGAGCACCCCGAC
GTCTCCAAgcgggacgaaggggacgCGGCGCGGTGGCGGGCGAAGCACGT
AATCACCGTCCAGGGGCACGGCATTCCCAAGCCCGTCTTTACGTTCGAGG
AGGCCTCCATGCCCGAGTACGTCCTTCAGGAGGTGATGAAGCAAGGCTTC
GACAGGCCCACCCCTATTCAGTCTCAGGGCTGGCCGATGGCGTTGCTGGG
ACGGGACATGATCGGGATCTCCGCCACGGGCTCGGGCAAGACGTTggcct
tcctgctcccagCCATGATCCACATCAACGCGCAGCCCTACCTCGAATCT
GGGGACGGTCCAATCGTGCTGGTGCTTGCTCCCACACGGGAGCTTGCGCT
GCAGATTAAACAGGAATGCGACAAGTTTGgccgttcctcctccatcaaaa
aCACGTGTGTGTACGGCGGAGTGCCCAAGCGCGAGCAAGTCTACGACCTG
AAACGCGGGATGGAGATTGTCGTGGCCACGCCCGGGCGCCTGATCGACCA
CCTGGAGAGCGGCATGACCAACCTAAGGCGCGTCACGTACCTGGTCTTGG
ACGAGGCTGACCGCATGTTGGACATGGGCTTCGAGCCCCAGCTACGGTCC
ATTGTCTCCCAGATCCGCCCGGACAGGCAGACGCTCATGTGGAGTGCGAC
GTGGCCGAAAGAGGTGCAGAGCCTGGCCCGGGACTTCCTCAAGGACCCTT
ACCAGGTGACTGTGGGCTCCTTGGACCTGGCGGCGAACAAGGACATCAAG
CAGGAGGTGATGGTGTGCGAGGACCGGGACAAATATGGGCTGCTTTTGCG
GGCATTAAAGGAGAACAACACTGGTGGGAAGGTGCTGGTGTTCGTAGAAA
CGAAGCGGGGCTGCGACCAACTTCAGCGCTCCTTACAAATGGACGGGTTC
TCGGCCGTGGCGATCCACGGTGACAAGAGCCAGCAAGACCGGGACTGGAC
CCTCCGCCAgttcaaggaggggaggtccAACATTTTGGTGGCTACGGACG
TAGCGGCGCGAGGCTTGGACGTGAAAGATATCCAGATGGTGGCTAATTTT
GACTTCCCCAACAATATGGAGGATTATATTCATCGTGTCGGGCGCACGGG
AAGGGCGGGTGCCAAAGGTTACGCCCTCTCATTTGTGACGCAAAAACATG
CCAGGATTTCACGGGAGCTCGCGAAGATTCTGGAGGAGTCGGGAAACCAG
GTTCCTGCTGCCCTGCGTGGGatgggtggcggaggaggttatgGCAGGGG
CCGGTACTGAATGGCGGCGGTAGCAGCTATGGAAGCTAcggcggtggggg
caggTCACtatggcgggggaggaggcggctacggcggaggtggaggttaC
GGGGGTGGGCGCGGGGGTGGCGATCGTATGGGAGGCTTGGGCGCTGGCCT
CCGCAGCATTCAGTGGGACCTGAGCAAGCTGCCCCCGTTCGAAAAGAACT
TCTACATCGAGCACCCCGACGTCTCCAAgcgggacgaaggggacgCGGCG
CGGTGGCGGGCGAAGCACGTAATCACCGTCCAGGGGCACGGCATTCCCAA
GCCCGTCTTTACGTTCGAGGAGGCCTCCATGCCCGAGTACGTCCTTCAGG
AGGTGATGAAGCAAGGCTTCGACAGGCCCACCCCTATTCAGTCTCAGGGC
TGGCCGATGGCGTTGCTGGGACGGGACATGATCGGGATCTCCGCCACGGG
CTCGGGCAAGACGTTggccttcctgctcccagCCATGATCCACATCAACG
CGCAGCCCTACCTCGAATCTGGGGACGGTCCAATCGTGCTGGTGCTTGCT
CCCACACGGGAGCTTGCGCTGCAGATTAAACAGGAATGCGACAAGTTTGg
ccgttcctcctccatcaaaaaCACGTGTGTGTACGGCGGAGTGCCCAAGC
GCGAGCAAGTCTACGACCTGAAACGCGGGATGGAGATTGTCGTGGCCACG
CCCGGGCGCCTGATCGACCACCTGGAGAGCGGCATGACCAACCTAAGGCG
CGTCACGTACCTGGTCTTGGACGAGGCTGACCGCATGTTGGACATGGGCT
TCGAGCCCCAGCTACGGTCCATTGTCTCCCAGATCCGCCCGGACAGGCAG
ACGCTCATGTGGAGTGCGACGTGGCCGAAAGAGGTGCAGAGCCTGGCCCG
GGACTTCCTCAAGGACCCTTACCAGGTGACTGTGGGCTCCTTGGACCTGG
CGGCGAACAAGGACATCAAGCAGGAGGTGATGGTGTGCGAGGACCGGGAC
AAATATGGGCTGCTTTTGCGGGCATTAAAGGAGAACAACACTGGTGGGAA
GGTGCTGGTGTTCGTAGAAACGAAGCGGGGCTGCGACCAACTTCAGCGCT
CCTTACAAATGGACGGGTTCTCGGCCGTGGCGATCCACGGTGACAAGAGC
CAGCAAGACCGGGACTGGACCCTCCGCCAgttcaaggaggggaggtccAA
CATTTTGGTGGCTACGGACGTAGCGGCGCGAGGCTTGGACGTGAAAGATA
TCCAGATGGTGGCTAATTTTGACTTCCCCAACAATATGGAGGATTATATT
CATCGTGTCGGGCGCACGGGAAGGGCGGGTGCCAAAGGTTACGCCCTCTC
ATTTGTGACGCAAAAACATGCCAGGATTTCACGGGAGCTCGCGAAGATTC
TGGAGGAGTCGGGAAACCAGGTTCCTGCTGCCCTGCGTGGGatgggtggc
ggaggaggttatgGCAGGGGCCGGTACTGA

Synonyms

Publications