EWM27261.1, cds3402 (CDS) Nannochloropsis gaditana

Overview
NameEWM27261.1
Unique Namecds3402
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002461.1:349982..349997 +
Alignment locationCM002461.1:350107..350137 +
Alignment locationCM002461.1:350252..350699 +
Alignment locationCM002461.1:352059..353033 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM27261.1
Productdead-box atp-dependent rna helicase
Orig transcript idgnl|cribi|Naga_100038g3.7716.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002461.1supercontigCM002461.1:349982..349997 +
CM002461.1supercontigCM002461.1:350107..350137 +
CM002461.1supercontigCM002461.1:350252..350699 +
CM002461.1supercontigCM002461.1:352059..353033 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0016787hydrolase activity
GO:0003723RNA binding
GO:0000166nucleotide binding
GO:0003676nucleic acid binding
GO:0005524ATP binding
Vocabulary: Cellular Component
TermDefinition
GO:0005737cytoplasm
GO:0005634nucleus
Vocabulary: INTERPRO
TermDefinition
IPR014014RNA_helicase_DEAD_Q_motif
IPR000629RNA-helicase_DEAD-box_CS
IPR027417P-loop_NTPase
IPR011545DEAD/DEAH_box_helicase_dom
IPR001650Helicase_C
IPR014001Helicase_ATP-bd
Homology
BLAST of EWM27261.1 vs. NCBI_GenBank
Match: gi|585109442|gb|EWM27261.1| (dead-box atp-dependent rna helicase [Nannochloropsis gaditana])

HSP 1 Score: 1003.82 bits (2594), Expect = 0.000e+0
Identity = 489/489 (100.00%), Postives = 489/489 (100.00%), Query Frame = 0
Query:    1 MAAVAAMEATAVGAGHYGGGGGGYGGGGGYGGGRGGGDRMGGLGAGLRSIQWDLSKLPPFEKNFYIEHPDVSKRDEGDAARWRAKHVITVQGHGIPKPVFTFEEASMPEYVLQEVMKQGFDRPTPIQSQGWPMALLGRDMIGISATGSGKTLAFLLPAMIHINAQPYLESGDGPIVLVLAPTRELALQIKQECDKFGRSSSIKNTCVYGGVPKREQVYDLKRGMEIVVATPGRLIDHLESGMTNLRRVTYLVLDEADRMLDMGFEPQLRSIVSQIRPDRQTLMWSATWPKEVQSLARDFLKDPYQVTVGSLDLAANKDIKQEVMVCEDRDKYGLLLRALKENNTGGKVLVFVETKRGCDQLQRSLQMDGFSAVAIHGDKSQQDRDWTLRQFKEGRSNILVATDVAARGLDVKDIQMVANFDFPNNMEDYIHRVGRTGRAGAKGYALSFVTQKHARISRELAKILEESGNQVPAALRGMGGGGGYGRGRY 489
            MAAVAAMEATAVGAGHYGGGGGGYGGGGGYGGGRGGGDRMGGLGAGLRSIQWDLSKLPPFEKNFYIEHPDVSKRDEGDAARWRAKHVITVQGHGIPKPVFTFEEASMPEYVLQEVMKQGFDRPTPIQSQGWPMALLGRDMIGISATGSGKTLAFLLPAMIHINAQPYLESGDGPIVLVLAPTRELALQIKQECDKFGRSSSIKNTCVYGGVPKREQVYDLKRGMEIVVATPGRLIDHLESGMTNLRRVTYLVLDEADRMLDMGFEPQLRSIVSQIRPDRQTLMWSATWPKEVQSLARDFLKDPYQVTVGSLDLAANKDIKQEVMVCEDRDKYGLLLRALKENNTGGKVLVFVETKRGCDQLQRSLQMDGFSAVAIHGDKSQQDRDWTLRQFKEGRSNILVATDVAARGLDVKDIQMVANFDFPNNMEDYIHRVGRTGRAGAKGYALSFVTQKHARISRELAKILEESGNQVPAALRGMGGGGGYGRGRY
Sbjct:    1 MAAVAAMEATAVGAGHYGGGGGGYGGGGGYGGGRGGGDRMGGLGAGLRSIQWDLSKLPPFEKNFYIEHPDVSKRDEGDAARWRAKHVITVQGHGIPKPVFTFEEASMPEYVLQEVMKQGFDRPTPIQSQGWPMALLGRDMIGISATGSGKTLAFLLPAMIHINAQPYLESGDGPIVLVLAPTRELALQIKQECDKFGRSSSIKNTCVYGGVPKREQVYDLKRGMEIVVATPGRLIDHLESGMTNLRRVTYLVLDEADRMLDMGFEPQLRSIVSQIRPDRQTLMWSATWPKEVQSLARDFLKDPYQVTVGSLDLAANKDIKQEVMVCEDRDKYGLLLRALKENNTGGKVLVFVETKRGCDQLQRSLQMDGFSAVAIHGDKSQQDRDWTLRQFKEGRSNILVATDVAARGLDVKDIQMVANFDFPNNMEDYIHRVGRTGRAGAKGYALSFVTQKHARISRELAKILEESGNQVPAALRGMGGGGGYGRGRY 489          
BLAST of EWM27261.1 vs. NCBI_GenBank
Match: gi|298704856|emb|CBJ28373.1| (DEAD box helicase [Ectocarpus siliculosus])

HSP 1 Score: 679.093 bits (1751), Expect = 0.000e+0
Identity = 337/447 (75.39%), Postives = 371/447 (83.00%), Query Frame = 0
Query:   45 AGLRSIQWDLSKLPPFEKNFYIEHPDVSKRDEGDAARWRAKHVITVQGHGIPKPVFTFEEASMPEYVLQEVMKQGFDRPTPIQSQGWPMALLGRDMIGISATGSGKTLAFLLPAMIHINAQPYLESGDGPIVLVLAPTRELALQIKQECDKFGRSSSIKNTCVYGGVPKREQVYDLKRGMEIVVATPGRLIDHLESGMTNLRRVTYLVLDEADRMLDMGFEPQLRSIVSQIRPDRQTLMWSATWPKEVQSLARDFLKDPYQVTVGSLDLAANKDIKQEVMVCEDRDKYGLLLRALKENNTGGKVLVFVETKRGCDQLQRSLQMDGFSAVAIHGDKSQQDRDWTLRQFKEGRSNILVATDVAARGLDVKDIQMVANFDFPNNMEDYIHRVGRTGRAGAKGYALSFVTQKHARISRELAKILEESGNQVPAALRGMGGGGGY--GRGRY 489
            A LR+IQWDL  L  FEKNFYIEHPDVSKR E + + WR K  I +QG GIPKP  TFEEASMPEYVL+EVMKQGF  PTPIQSQGWPMALLGRDM+GISATGSGKTLAFLLPAMIHINAQPYLE GDGPIVLV+APTRELA+QIK+ECDKFGRSS IKNTCVYGGVPKR QV DL RG+EIV+ATPGRLID LESG TNLRRVTYLVLDEADRMLDMGFEPQ+R IVSQIRPDRQTLMWSATWPKEVQ+LARDFL   YQVTVGSL+LAANKDIKQ +   ED +KY  L + L+++   GKVLVFVETK+GCD L RSL+ DG+ A  IHGDK+Q++RD+ L+ FK G   +LVATDVAARGLDVKDIQMV NFDFPNNMEDYIHR+GR GRAGAKG A+SF   K++R  REL KIL ES N VP  L+ M   GG   G  RY
Sbjct:   71 ANLRNIQWDLESLHKFEKNFYIEHPDVSKRSEEETSAWRHKCGIVIQGEGIPKPAMTFEEASMPEYVLREVMKQGFSAPTPIQSQGWPMALLGRDMVGISATGSGKTLAFLLPAMIHINAQPYLEQGDGPIVLVVAPTRELAVQIKEECDKFGRSSEIKNTCVYGGVPKRIQVNDLNRGVEIVIATPGRLIDLLESGKTNLRRVTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQTLMWSATWPKEVQALARDFLHHYYQVTVGSLELAANKDIKQIIECTEDFNKYRSLSKHLQQHGHNGKVLVFVETKKGCDALTRSLRQDGYQARCIHGDKTQEERDYVLKDFKGGNFQVLVATDVAARGLDVKDIQMVINFDFPNNMEDYIHRIGRCGRAGAKGVAVSFFGSKNSRNGRELIKILTESENHVPPELQQMQMMGGGGGGHSRY 517          

HSP 2 Score: 672.544 bits (1734), Expect = 0.000e+0
Identity = 352/457 (77.02%), Postives = 386/457 (84.46%), Query Frame = 0
Query:   19 GGGGGYGGGGGYGGGRGGGDRMGGLGAGLRSIQWDLSKLPPFEKNFYIEHPDVSKRDEGDAARWRAKHVITVQGHGIPKPVFTFEEASMPEYVLQEVMKQGFDRPTPIQSQGWPMALLGRDMIGISATGSGKTLAFLLPAMIHINAQPYLESGDGPIVLVLAPTRELALQIKQECDKFGRSSSIKNTCVYGGVPKREQVYDLKRGMEIVVATPGRLIDHLESGMTNLRRVTYLVLDEADRMLDMGFEPQLRSIVSQIRPDRQTLMWSATWPKEVQSLARDFLKDPYQVTVGSLDLAANKDIKQEVMVCEDRDKYGLLLRALKENNTGGKVLVFVETKRGCDQLQRSLQMDGFSAVAIHGDKSQQDRDWTLRQFKEGRSNILVATDVAARGLDVKDIQMVANFDFPNNMEDYIHRVGRTGRAGAKGYALSFVTQKHARISRELAKILEESGNQVPAAL 475
            G GGG GGGGG+ GG GGGDRMGGLGA LR+IQWDL  L  FEKNFYIEHPDVSKR E + + WR K  I +QG GIPKP  TFEEASMPEYVL+EVMKQGF  PTPIQSQGWPMALLGRDM+GISATGSGKTLAFLLPAMIHINAQPYLE GDGPIVLV+APTRELA+QIK+ECDKFGRSS IKNTCVYGGVPKR QV DL RG+EIV+ATPGRLID LESG TNLRRVTYLVLDEADRMLDMGFEPQ+R IVSQIRPDRQTLMWSATWPKEVQ+LARDFL   YQVTVGSL+LAANKDIKQ +   ED +KY  L + L+++   GKVLVFVETK+GCD L RSL+ DG+ A  IHGDK+Q++RD+ L+ FK G   +LVATDVAARGLDVKDIQMV NFDFPNNMEDYIHR+GR GRAGAKG A+SF   K++R  REL KIL ES N VP  L
Sbjct:   45 GYGGGGGGGGGFRGGGGGGDRMGGLGANLRNIQWDLESLHKFEKNFYIEHPDVSKRSEEETSAWRHKCGIVIQGEGIPKPAMTFEEASMPEYVLREVMKQGFSAPTPIQSQGWPMALLGRDMVGISATGSGKTLAFLLPAMIHINAQPYLEQGDGPIVLVVAPTRELAVQIKEECDKFGRSSEIKNTCVYGGVPKRIQVNDLNRGVEIVIATPGRLIDLLESGKTNLRRVTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQTLMWSATWPKEVQALARDFLHHYYQVTVGSLELAANKDIKQIIECTEDFNKYRSLSKHLQQHGHNGKVLVFVETKKGCDALTRSLRQDGYQARCIHGDKTQEERDYVLKDFKGGNFQVLVATDVAARGLDVKDIQMVINFDFPNNMEDYIHRIGRCGRAGAKGVAVSFFGSKNSRNGRELIKILTESENHVPPEL 501          
BLAST of EWM27261.1 vs. NCBI_GenBank
Match: gi|299117107|emb|CBN73878.1| (DEAD box helicase [Ectocarpus siliculosus])

HSP 1 Score: 664.84 bits (1714), Expect = 0.000e+0
Identity = 322/433 (74.36%), Postives = 368/433 (84.99%), Query Frame = 0
Query:   40 MGGLGAGLRSIQWDLSKLPPFEKNFYIEHPDVSKRDEGDAARWRAKHVITVQGHGIPKPVFTFEEASMPEYVLQEVMKQGFDRPTPIQSQGWPMALLGRDMIGISATGSGKTLAFLLPAMIHINAQPYLESGDGPIVLVLAPTRELALQIKQECDKFGRSSSIKNTCVYGGVPKREQVYDLKRGMEIVVATPGRLIDHLESGMTNLRRVTYLVLDEADRMLDMGFEPQLRSIVSQIRPDRQTLMWSATWPKEVQSLARDFLKDPYQVTVGSLDLAANKDIKQEVMVCEDRDKYGLLLRALKENNTGGKVLVFVETKRGCDQLQRSLQMDGFSAVAIHGDKSQQDRDWTLRQFKEGRSNILVATDVAARGLDVKDIQMVANFDFPNNMEDYIHRVGRTGRAGAKGYALSFVTQKHARISRELAKILEESGNQVP 472
            MG LGA L    WDLSKL  FEKNFYIEHP V+ R + +   WR    IT+QG GIPKPV TFEEASMPEYVL+EV+KQGF +PTPIQSQGWPMALLGRDM+GISATGSGKTLAFLLPAMIHINAQPYLE GDGPIVLV+APTRELA+QIK+ECDKFG SS IKNTCVYGGVPKR QVYDL RG+EIV+ATPGRLID LESG TNLRRVTYLVLDEADRMLDMGFEPQ+RSIVSQIRPDRQTLMWSATWPKEV+ LARDFL++ YQVTVGSL+L+ANKDI+Q V + ED  KY +L + L+E+N  G+VL+FVETK+GCD L RSL+ +G+ A+AIHGDK+Q +RD  L  FKEGRS ILVATDVAARGLDVKDI+MV NFDFP  ME Y+HR+GR GRAG KG A+SF   K+++ +REL +IL+++ NQ P
Sbjct:    1 MGRLGAQLNKNSWDLSKLQKFEKNFYIEHPHVTSRSQEEGDAWRRSVGITIQGDGIPKPVMTFEEASMPEYVLREVLKQGFPKPTPIQSQGWPMALLGRDMVGISATGSGKTLAFLLPAMIHINAQPYLEQGDGPIVLVVAPTRELAVQIKEECDKFGGSSDIKNTCVYGGVPKRSQVYDLSRGVEIVIATPGRLIDLLESGKTNLRRVTYLVLDEADRMLDMGFEPQIRSIVSQIRPDRQTLMWSATWPKEVEGLARDFLRNYYQVTVGSLELSANKDIQQVVEIVEDFGKYRVLAKHLQEHNNAGRVLIFVETKKGCDALTRSLRHEGWPALAIHGDKNQSERDRVLHDFKEGRSLILVATDVAARGLDVKDIRMVINFDFPKEMESYVHRIGRCGRAGHKGTAISFFAGKNSKCARELIRILKQA-NQKP 432          
BLAST of EWM27261.1 vs. NCBI_GenBank
Match: gi|224010271|ref|XP_002294093.1| (atp-dependent RNA helicase [Thalassiosira pseudonana CCMP1335] >gi|220970110|gb|EED88448.1| atp-dependent RNA helicase [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 653.284 bits (1684), Expect = 0.000e+0
Identity = 317/445 (71.24%), Postives = 365/445 (82.02%), Query Frame = 0
Query:   35 GGGDRMGG--LGAGLRSIQWDLSKLPPFEKNFYIEHPDVSKRDEGDAARWRAKHVITVQGHGIPKPVFTFEEASMPEYVLQEVMKQGFDRPTPIQSQGWPMALLGRDMIGISATGSGKTLAFLLPAMIHINAQPYLESGDGPIVLVLAPTRELALQIKQECDKFGRSSSIKNTCVYGGVPKREQVYDLKRGMEIVVATPGRLIDHLESGMTNLRRVTYLVLDEADRMLDMGFEPQLRSIVSQIRPDRQTLMWSATWPKEVQSLARDFLKDPYQVTVGSLDLAANKDIKQEVMVCEDRDKYGLLLRALKENNTG-GKVLVFVETKRGCDQLQRSLQMDGFSAVAIHGDKSQQDRDWTLRQFKEGRSNILVATDVAARGLDVKDIQMVANFDFPNNMEDYIHRVGRTGRAGAKGYALS-FVTQKHARISRELAKILEESGNQVPAAL 475
            GGG       LG  L SI +   +L PFEK+FYIEHPDVSKR E +A  WRA   I + G GIPKP  TFEEASMPEYVL EV+K GFD+PTPIQSQGWPMAL G++M+GISATGSGKTLAFLLPAMIHINAQ YL+ G+GPIVLVLAPTRELA+QIK+ECDKFG SS IKNT VYGGVPK +QV  L+ G+EIV+ATPGRLIDHLE G TNL+RVTYLVLDEADRMLDMGFEPQLR IVSQIRPDRQ LMWSATWPKEVQ+LARD+L D YQVTVGSLDLA NKD+ Q + VC D+DKY  LLR L+EN T   +VLVFVETK+GCD L RSL+MDGF A A+HGDKSQ++RDW LR+FK  ++ +LVATDVAARGLDV DI+MV NFDFPN+ E YIHR+GRTGRAG KG+A+S FVT+K+ R++R++ +IL  +   VP  L
Sbjct:    2 GGGSNFSNSNLGGTLHSIDFSSQQLIPFEKDFYIEHPDVSKRPETEAQAWRASKQIVIVGEGIPKPCMTFEEASMPEYVLSEVIKCGFDKPTPIQSQGWPMALKGKNMVGISATGSGKTLAFLLPAMIHINAQQYLKPGEGPIVLVLAPTRELAVQIKEECDKFGASSEIKNTVVYGGVPKSKQVRSLREGVEIVIATPGRLIDHLEQGNTNLKRVTYLVLDEADRMLDMGFEPQLRKIVSQIRPDRQVLMWSATWPKEVQNLARDYLSDFYQVTVGSLDLAGNKDVTQMIDVCSDQDKYRNLLRYLRENLTSKDRVLVFVETKKGCDMLTRSLRMDGFQARAMHGDKSQEERDWVLREFKSCQATLLVATDVAARGLDVDDIKMVVNFDFPNDTETYIHRIGRTGRAGKKGFAVSFFVTEKNGRMARDIIEILNRTQQNVPPEL 446          
BLAST of EWM27261.1 vs. NCBI_GenBank
Match: gi|219110339|ref|XP_002176921.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217411456|gb|EEC51384.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 635.95 bits (1639), Expect = 0.000e+0
Identity = 308/440 (70.00%), Postives = 358/440 (81.36%), Query Frame = 0
Query:   41 GGLGAGLRSIQWDLSKLPPFEKNFYIEHPDVSKRDEGDAARWRAKHVITVQGHGIPKPVFTFEEASMPEYVLQEVMKQGFDRPTPIQSQGWPMALLGRDMIGISATGSGKTLAFLLPAMIHINAQPYLESGDGPIVLVLAPTRELALQIKQECDKFGRSSSIKNTCVYGGVPKREQVYDLKRGMEIVVATPGRLIDHLESGMTNLRRVTYLVLDEADRMLDMGFEPQLRSIVSQIRPDRQTLMWSATWPKEVQSLARDFLKDPYQVTVGSLDLAANKDIKQEVMVCEDRDKYGLLLRALKEN-NTGGKVLVFVETKRGCDQLQRSLQMDGFSAVAIHGDKSQQDRDWTLRQFKEGRSNILVATDVAARGLDVKDIQMVANFDFPNNMEDYIHRVGRTGRAGAKGYALS-FVTQKHARISRELAKILEESGNQVPAALRGM 478
              LGA L SI +  ++L  FEK+FYIEHPDV  R + +A  WRA   I V+GH +PKPV TF+EASMPEYVL EV+K GFD+PTPIQSQGWPMAL GR+M+G+SATGSGKTLAFLLPAMIHINAQPYL+ GDGPIVLVLAPTRELA+QIK+ECDKFG SS IKNT VYGGV K  Q+ +L+ G EI +ATPGRLIDHLE G TNL+RVTYLVLDEADRMLDMGFEPQLR IVSQIRPDRQ LMWSATWPKEVQ+LA D+L+D YQVTVGSLDL+ANKD+ Q + VC D DKY  L R L+EN +   +VLVFVETK+GCD L RSL+ DGF A A+HGDKSQ++RDW LR+FK  +S +LVATDVAARGLDV DI++V NFDFP  M+ YIHRVGRTGRAG KG+A+S FV  K+AR++REL  IL  +   VP  L+ +
Sbjct:   71 SNLGATLGSIDFSKTELVQFEKDFYIEHPDVRARSDQEADAWRASKQIVVRGHDVPKPVMTFDEASMPEYVLNEVLKCGFDKPTPIQSQGWPMALKGRNMVGVSATGSGKTLAFLLPAMIHINAQPYLKPGDGPIVLVLAPTRELAVQIKEECDKFGSSSEIKNTVVYGGVKKHTQLRELRAGAEICIATPGRLIDHLEQGNTNLKRVTYLVLDEADRMLDMGFEPQLRKIVSQIRPDRQVLMWSATWPKEVQALANDYLQDFYQVTVGSLDLSANKDVTQIIEVCTDMDKYRNLQRYLRENLSPKDRVLVFVETKKGCDMLTRSLRSDGFQARAMHGDKSQEERDWALREFKGMQSTLLVATDVAARGLDVDDIRIVVNFDFPKEMDSYIHRVGRTGRAGKKGFAVSFFVPDKNARLARELVDILNRTSQNVPQELQAL 510          
BLAST of EWM27261.1 vs. NCBI_GenBank
Match: gi|673027324|ref|XP_008867623.1| (hypothetical protein H310_04867 [Aphanomyces invadans] >gi|574476396|gb|ETW03394.1| hypothetical protein H310_04867 [Aphanomyces invadans])

HSP 1 Score: 633.639 bits (1633), Expect = 0.000e+0
Identity = 301/437 (68.88%), Postives = 356/437 (81.46%), Query Frame = 0
Query:   43 LGAGLRS-IQWDLSKLPPFEKNFYIEHPDVSKRDEGDAARWRAKHVITVQGHGIPKPVFTFEEASMPEYVLQEVMKQGFDRPTPIQSQGWPMALLGRDMIGISATGSGKTLAFLLPAMIHINAQPYLESGDGPIVLVLAPTRELALQIKQECDKFGRSSSIKNTCVYGGVPKREQVYDLKRGMEIVVATPGRLIDHLESGMTNLRRVTYLVLDEADRMLDMGFEPQLRSIVSQIRPDRQTLMWSATWPKEVQSLARDFLKDPYQVTVGSLDLAANKDIKQEVMVCEDRDKYGLLLRALKENNTGGKVLVFVETKRGCDQLQRSLQMDGFSAVAIHGDKSQQDRDWTLRQFKEGRSNILVATDVAARGLDVKDIQMVANFDFPNNMEDYIHRVGRTGRAGAKGYALSFVTQKHARISRELAKILEESGNQVPAALRGM 478
            LGA L + IQWDLSKLP FEKNFY EHPDVS+R E D  RWRAKH I+V G G+PK V TFEEAS P+YVL EV++ GF  PTPIQ QGWPMAL GRDM+GISATGSGKTLAFLLPA++HINAQPYL+ GDGPIVLV+APTRELA+QIKQECDKFG SS IKNTCVYGGVPKR Q+ DL RG+EI + TPGR+ID L    TNLRRVTYLVLDEADRMLDMGFEPQLR IVSQIRPDRQTLMWSATWPKE+ SLA DFL D  QVTVGSL+L ANK+I Q V V  D DKYG L+  L++   GG++++F ETKRG D+L R+L+   ++  AIHG+KSQ++RDW L++FKEG++ ILVATDVA+RGLD+KDI+ V NFD P N+EDYIHR+GRT RAG KG A+S+ T ++ RI+ ++ +IL E+G +VP  L  +
Sbjct:   74 LGANLNTNIQWDLSKLPVFEKNFYYEHPDVSRRTEEDTVRWRAKHSISVNGKGVPKHVETFEEASFPQYVLDEVVRLGFASPTPIQCQGWPMALSGRDMVGISATGSGKTLAFLLPAIVHINAQPYLQPGDGPIVLVIAPTRELAVQIKQECDKFGSSSKIKNTCVYGGVPKRGQIEDLSRGVEICICTPGRMIDLLNINKTNLRRVTYLVLDEADRMLDMGFEPQLRKIVSQIRPDRQTLMWSATWPKEIVSLAHDFLNDFIQVTVGSLELTANKNITQVVKVMTDMDKYGALMDLLRDVYEGGRIIIFCETKRGADELCRNLKGTRYATRAIHGNKSQEERDWVLKEFKEGKAQILVATDVASRGLDIKDIRYVINFDMPKNIEDYIHRIGRTARAGMKGTAVSYFTAENGRIAGDMIRILSEAGQEVPRELENL 510          
BLAST of EWM27261.1 vs. NCBI_GenBank
Match: gi|1210526598|dbj|GAX14556.1| (ATP-dependent RNA helicase DDX5/DBP2 [Fistulifera solaris])

HSP 1 Score: 626.706 bits (1615), Expect = 0.000e+0
Identity = 311/461 (67.46%), Postives = 366/461 (79.39%), Query Frame = 0
Query:   22 GGYGGGGGYGGGRGGGDRMGGLGAGLRSIQWDLSKLPPFEKNFYIEHPDVSKRDEGDAARWRAKHVITVQGHGIPKPVFTFEEASMPEYVLQEVMKQGFDRPTPIQSQGWPMALLGRDMIGISATGSGKTLAFLLPAMIHINAQPYLESGDGPIVLVLAPTRELALQIKQECDKFGRSSSIKNTCVYGGVPKREQVYDLKRGMEIVVATPGRLIDHLESGMTNLRRVTYLVLDEADRMLDMGFEPQLRSIVSQIRPDRQTLMWSATWPKEVQSLARDFLKDPYQVTVGSLDLAANKDIKQEVMVCEDRDKYGLLLRALKENNTG-GKVLVFVETKRGCDQLQRSLQMDGFSAVAIHGDKSQQDRDWTLRQFKEGRSNILVATDVAARGLDVKDIQMVANFDFPNNMEDYIHRVGRTGRAGAKGYALS-FVTQKHARISRELAKILEESGNQVPAALRGMGG 480
              YG   G     GGG +   LGAGL  I +  ++L PFEKNFYIEHPDV+KR E +A  WRA   I+V G  +PKPV TF+EASMPEYVL EV+K GFD PTPIQSQGWPMAL GR+M+GISATGSGKTLAFLLPAM+HINAQ YL+ GDGPIVLVLAPTRELA+QIK+ECDKFG SS IKNT VYGGV K  QV  L+ G+EI++ATPGRLIDHLE G TNLRRVTYLV+DEADRMLDMGFEPQ+R I SQIRPDRQ LMWSATWPKEVQ+LA D+L+D YQVTVGSLDL+ NK+I Q + VC D+DKY  LLR L+EN +   +VLVFVETK+GCD L RSL+ DG++A A+HGDKSQ++RDWTLR+FK   S +LVATDVAARGLDV DI++V NFDFP  ME Y+HR+GRTGR G  G A+S FV +K+ R++REL +IL+ +   +P  L+ M  
Sbjct:   74 SSYGAPSG-----GGGYQSSNLGAGLSQIDFANTELVPFEKNFYIEHPDVTKRSEQEANEWRASKNISVSGTDVPKPVMTFDEASMPEYVLTEVLKCGFDTPTPIQSQGWPMALKGRNMVGISATGSGKTLAFLLPAMVHINAQAYLKPGDGPIVLVLAPTRELAVQIKEECDKFGASSDIKNTVVYGGVKKGTQVQALRAGIEILIATPGRLIDHLEQGNTNLRRVTYLVMDEADRMLDMGFEPQIRKICSQIRPDRQVLMWSATWPKEVQALANDYLRDYYQVTVGSLDLSGNKNITQMIEVCTDQDKYRNLLRILRENYSAKDRVLVFVETKKGCDMLCRSLRADGYTARAMHGDKSQEERDWTLREFKNKNSTLLVATDVAARGLDVDDIRIVINFDFPKEMESYVHRIGRTGRGGKTGLAVSFFVAEKNGRLARELVEILKRTSQVIPPELQAMAS 529          
BLAST of EWM27261.1 vs. NCBI_GenBank
Match: gi|698784499|ref|XP_009825293.1| (hypothetical protein H257_03074 [Aphanomyces astaci] >gi|574119796|gb|ETV85275.1| hypothetical protein H257_03074 [Aphanomyces astaci])

HSP 1 Score: 626.706 bits (1615), Expect = 0.000e+0
Identity = 294/430 (68.37%), Postives = 350/430 (81.40%), Query Frame = 0
Query:   49 SIQWDLSKLPPFEKNFYIEHPDVSKRDEGDAARWRAKHVITVQGHGIPKPVFTFEEASMPEYVLQEVMKQGFDRPTPIQSQGWPMALLGRDMIGISATGSGKTLAFLLPAMIHINAQPYLESGDGPIVLVLAPTRELALQIKQECDKFGRSSSIKNTCVYGGVPKREQVYDLKRGMEIVVATPGRLIDHLESGMTNLRRVTYLVLDEADRMLDMGFEPQLRSIVSQIRPDRQTLMWSATWPKEVQSLARDFLKDPYQVTVGSLDLAANKDIKQEVMVCEDRDKYGLLLRALKENNTGGKVLVFVETKRGCDQLQRSLQMDGFSAVAIHGDKSQQDRDWTLRQFKEGRSNILVATDVAARGLDVKDIQMVANFDFPNNMEDYIHRVGRTGRAGAKGYALSFVTQKHARISRELAKILEESGNQVPAALRGM 478
            +IQWDLSKLP FEKNFY EHPDVS+R + D   WRAKH I+V G G+PK V TFEEAS P+YVL EV++ GF  PTPIQ QGWPMAL GRDM+GISATGSGKTLAFLLPA++HINAQPYL+ GDGPIVLV+APTRELA+QIKQECDKFG SS IKNTCVYGGVPKR Q+ DL RG+EI + TPGR+ID L    TNLRRVTYLVLDEADRMLDMGFEPQLR IVSQIRPDRQTLMWSATWPKE+ +LA DFL D  QVTVGSL+L ANK+I Q V V  D DKYG L   L++    G++++F ETKRG D+L  +L+   ++  AIHG+KSQ++RDW L++FKEG++ ILVATDVA+RGLD+KDI+ V NFD P N+EDYIHR+GRT RAG KG A+S+ TQ ++RI++++ +IL E+G +VP  L  M
Sbjct:   73 NIQWDLSKLPVFEKNFYYEHPDVSRRSDSDTEHWRAKHTISVNGKGVPKHVETFEEASFPQYVLDEVVRLGFAAPTPIQCQGWPMALSGRDMVGISATGSGKTLAFLLPAIVHINAQPYLQPGDGPIVLVIAPTRELAVQIKQECDKFGSSSKIKNTCVYGGVPKRGQIEDLSRGVEICICTPGRMIDLLNINKTNLRRVTYLVLDEADRMLDMGFEPQLRKIVSQIRPDRQTLMWSATWPKEIVALAHDFLNDFIQVTVGSLELTANKNITQVVKVMGDMDKYGALTDLLRDVYDDGRIIIFCETKRGADELCNNLKRTRYATRAIHGNKSQEERDWVLKEFKEGKAQILVATDVASRGLDIKDIRFVINFDMPKNIEDYIHRIGRTARAGMKGTAVSYFTQDNSRIAQDMIRILMEAGQEVPRELESM 502          
BLAST of EWM27261.1 vs. NCBI_GenBank
Match: gi|813109457|ref|XP_012194579.1| (hypothetical protein SPRG_00984 [Saprolegnia parasitica CBS 223.65] >gi|641541159|gb|KDO34922.1| hypothetical protein SPRG_00984 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 622.468 bits (1604), Expect = 0.000e+0
Identity = 297/439 (67.65%), Postives = 351/439 (79.95%), Query Frame = 0
Query:   43 LGAGLRS-IQWDLSKLPPFEKNFYIEHPDVSKRDEGDAARWRAKHVITVQGHGIPKPVFTFEEASMPEYVLQEVMKQGFDRPTPIQSQGWPMALLGRDMIGISATGSGKTLAFLLPAMIHINAQPYLESGDGPIVLVLAPTRELALQIKQECDKFGRSSSIKNTCVYGGVPKREQVYDLKRGMEIVVATPGRLIDHLESGMTNLRRVTYLVLDEADRMLDMGFEPQLRSIVSQIRPDRQTLMWSATWPKEVQSLARDFLKDPYQVTVGSLDLAANKDIKQEVMVCEDRDKYGLLLRALKENNTGGKVLVFVETKRGCDQLQRSLQMDGFSAVAIHGDKSQQDRDWTLRQFKEGRSNILVATDVAARGLDVKDIQMVANFDFPNNMEDYIHRVGRTGRAGAKGYALSFVTQKHARISRELAKILEESGNQVPAALRGMGG 480
            LG+ L + IQWDLSKLP FEKNFY EHP+V  R E +   WR KH +TV G G+PK V +FEEAS P+YVL EV++ GF  PTPIQSQGWPMAL GRDM+GISATGSGKTLAFLLPA++HINAQPYL+ GDGPIVLV+APTRELA+QI+QEC+KFG SS IKNTCVYGGVPKR+Q  DL RG+EI + TPGR+ID L    TNLRRVTYLVLDEADRMLDMGFEPQLR IVSQIRPDRQTLMWSATWPKE+ +LA DFL D  QVTVGSL+L ANK+I Q V V  D +KYG L   LK+   GGK++VF ETKRG D+L R+L+   F   AIHGDKSQ++RDW L++FK G++ ILVATDVA+RGLD+KDI+ V NFD P N+EDYIHR+GRT RAG KG A+S+VT  + ++ ++L KIL E+G +VP  L G+  
Sbjct:   81 LGSNLNTNIQWDLSKLPVFEKNFYYEHPNVGARSESELEEWRRKHQVTVNGKGVPKQVMSFEEASFPQYVLDEVVRLGFPAPTPIQSQGWPMALSGRDMVGISATGSGKTLAFLLPAIVHINAQPYLQPGDGPIVLVIAPTRELAVQIQQECNKFGASSKIKNTCVYGGVPKRQQCDDLARGVEICICTPGRMIDLLGQNKTNLRRVTYLVLDEADRMLDMGFEPQLRKIVSQIRPDRQTLMWSATWPKEIVTLAHDFLHDFIQVTVGSLELTANKNITQIVKVMSDHEKYGALSDLLKDIADGGKIIVFCETKRGADELTRNLRATRFVTRAIHGDKSQEERDWVLKEFKAGKAQILVATDVASRGLDIKDIRYVINFDMPKNIEDYIHRIGRTARAGQKGTAVSYVTADNGKMVQDLIKILREAGQEVPRELEGISS 519          
BLAST of EWM27261.1 vs. NCBI_GenBank
Match: gi|1210519088|dbj|GAX22086.1| (ATP-dependent RNA helicase DDX5/DBP2 [Fistulifera solaris])

HSP 1 Score: 620.928 bits (1600), Expect = 0.000e+0
Identity = 304/442 (68.78%), Postives = 359/442 (81.22%), Query Frame = 0
Query:   41 GGLGAGLRSIQWDLSKLPPFEKNFYIEHPDVSKRDEGDAARWRAKHVITVQGHGIPKPVFTFEEASMPEYVLQEVMKQGFDRPTPIQSQGWPMALLGRDMIGISATGSGKTLAFLLPAMIHINAQPYLESGDGPIVLVLAPTRELALQIKQECDKFGRSSSIKNTCVYGGVPKREQVYDLKRGMEIVVATPGRLIDHLESGMTNLRRVTYLVLDEADRMLDMGFEPQLRSIVSQIRPDRQTLMWSATWPKEVQSLARDFLKDPYQVTVGSLDLAANKDIKQEVMVCEDRDKYGLLLRALKENNTG-GKVLVFVETKRGCDQLQRSLQMDGFSAVAIHGDKSQQDRDWTLRQFKEGRSNILVATDVAARGLDVKDIQMVANFDFPNNMEDYIHRVGRTGRAGAKGYALS-FVTQKHARISRELAKILEESGNQVPAALRGMGG 480
              LGAGL  I +  ++L PFEKNFYIEHPDV+KR E +A  WRA   I+V G  +PKPV TF+EASMPEYVL EV+K GF+ PTPIQSQGWPMAL GR+M+GISATGSGKTLAFLLPAM+HINAQ YL+ GDGPIVLVLAPTRELA+QIK+ECDKFG SS IKNT VYGGV K  QV  L+ G+EI++ATPGRLIDHLE G TNLRRVTYLV+DEADRMLDMGFEPQ+R I SQIRPDRQ LMWSATWPKEVQ+LA D+L+D YQVTVGSLDL+ NK+I Q + VC D+DKY  LLR L+EN +   +VLVFVETK+GCD L RSL+ DG++A A+HGDKSQ++RDWTLR+FK   S +LVATDVAARGLDV DI++V NFDFP  ME Y+HR+GRTGR G  G A+S FV +K+ R++REL +IL+ +   +P  L+ M  
Sbjct:   99 SNLGAGLSQIDFANTELVPFEKNFYIEHPDVTKRSEQEANEWRASKNISVSGMDVPKPVMTFDEASMPEYVLTEVLKCGFNTPTPIQSQGWPMALKGRNMVGISATGSGKTLAFLLPAMVHINAQAYLKPGDGPIVLVLAPTRELAVQIKEECDKFGASSDIKNTVVYGGVKKGTQVQALRAGIEILIATPGRLIDHLEQGNTNLRRVTYLVMDEADRMLDMGFEPQIRKICSQIRPDRQVLMWSATWPKEVQALANDYLRDYYQVTVGSLDLSGNKNITQMIEVCTDQDKYRNLLRILRENYSAKDRVLVFVETKKGCDMLCRSLRADGYTARAMHGDKSQEERDWTLREFKNKNSTLLVATDVAARGLDVDDIRIVINFDFPKEMESYVHRIGRTGRGGKTGLAVSFFVAEKNGRLARELVEILKRTSQVIPPELQAMAS 540          
The following BLAST results are available for this feature:
BLAST of EWM27261.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585109442|gb|EWM27261.1|0.000e+0100.00dead-box atp-dependent rna helicase [Nannochlorops... [more]
gi|298704856|emb|CBJ28373.1|0.000e+075.39DEAD box helicase [Ectocarpus siliculosus][more]
gi|299117107|emb|CBN73878.1|0.000e+074.36DEAD box helicase [Ectocarpus siliculosus][more]
gi|224010271|ref|XP_002294093.1|0.000e+071.24atp-dependent RNA helicase [Thalassiosira pseudona... [more]
gi|219110339|ref|XP_002176921.1|0.000e+070.00predicted protein [Phaeodactylum tricornutum CCAP ... [more]
gi|673027324|ref|XP_008867623.1|0.000e+068.88hypothetical protein H310_04867 [Aphanomyces invad... [more]
gi|1210526598|dbj|GAX14556.1|0.000e+067.46ATP-dependent RNA helicase DDX5/DBP2 [Fistulifera ... [more]
gi|698784499|ref|XP_009825293.1|0.000e+068.37hypothetical protein H257_03074 [Aphanomyces astac... [more]
gi|813109457|ref|XP_012194579.1|0.000e+067.65hypothetical protein SPRG_00984 [Saprolegnia paras... [more]
gi|1210519088|dbj|GAX22086.1|0.000e+068.78ATP-dependent RNA helicase DDX5/DBP2 [Fistulifera ... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna3411rna3411Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications