rna3408, rna3408 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna3408
Unique Name	rna3408
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1580
Alignment location	CM002461.1:337000..338842 -

Link to JBrowse

Properties


Property Name	Value
Product	histidine triad protein member
Orig transcript id	gnl\|cribi\|Naga_100080g26.2841.mrna
Orig protein id	gnl\|cribi\|Naga_100080g26.2841
Gbkey	mRNA
Note	encoded by transcript variant 1; alternatively spliced

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002461.1	supercontig	CM002461.1:337000..338842 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100080g26	gene3282	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna3408	rna3408-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM27277.1	cds3399	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002461.1:337000..338842-
coding sequence from alignment at CM002461.1:337000..338842-

mRNA sequence

>rna3408 ID=rna3408|Name=rna3408|organism=Nannochloropsis gaditana|type=mRNA|length=1580bp
ACTAAGCGGGCCATATGATCGTGTGGCCGGGCATCGATCTGAGTTGCGTC
ATCGCGGAAGAGGCGGAGGGGGGAGGTCGGTCGCCTCCCCAAGTCACTGC
GTAATTATTGCAGGGCGCTTGCTAAAAGAAGGCCAGAATTCCTCCTTGCT
ACAACGTTGACAAAATAATTCACTTTTCATACATCCACATCCACGGCACG
ACGGATAGCCCAAGGGGTGGTTTCTGAGAAATTGCCTCCGACTACTTGCC
TCCTGCGCCACCCTCCTCAGCTTGTCTCATGCCCATCGCCGCATCGCAAC
TGAGCTTCTTTCTTGTCAGTAGCATATTGTTGAGTGTCGCCGCATTATCA
TGGAAGCGGAGACGAATCGGAAGCAAGTGGAGCGCTACCAACCTCATCCA
TCTTCGTGATTTCATAATGGAAGAGGTCTTGACAGACGAGGTAACGCCAT
CTCCTGACGGCTATACTGTTCTCCTGGGGCGTTTTACCTGGCAAGGCCGG
GATGAGAAGGCGATTCTCAAGATGCGGCCAGAGCAGCTGCCAGCAAGGGA
CAACGCGGTCACAAGAGAGCATTCACACACCGGAAAAGGTATTTTGAAGA
ATGGTTTCTGGGTGAGCTGTAAACGACAGAGCCTGCACCGAGCGCTGAGT
CACCTGAGCCTCCGCGTGCAGCTGGAAAGCGGGGCAGAGTACGGCTACTA
CTCAGGCAGCCTCTCCCCCCTGTCCATGGCATATCTGGGCATCCCTCTGA
CCTATCACATCGAAGTCATCGCCCCCGCCAGTCCCCGACAGATCGTCCGT
GCCCACGTGGAAAAGCGGGTGCTGATCCGGGAGTCACCGGCCCTGTACCG
CGTCGCCCTCGGTCCTCTGGCAGACGAGGTGCGGGGGGAGGGGCGTTCCC
TCCAATGGGTGTACAACATCCTTGAGCACAAGAAGGAAGCGGAGCGCATT
GTGTTTGAAGACCCTCCTGACCCCCTGGATTCGTCCAAGGGCTTCGTTCT
GGTCCCGGACCCCAAGTGGAAAAGCCACCCTGACCCCTCCCGGACTCCCA
AAGAGGAGTGGCGCCACCATCCGTCCACGTCTGGGCTTGCCTGTCTGGCC
ATCGTGCATGACCGCTCGATCGGCTCGCTCCGGGACTTGCGCCGAAGACA
CCTTCCACTTTTGCAGAGCCTGCTGGCTAAGGGATTGGCAGCGATCGAGG
CCGTGTACGGGTGCATTTCTCCAGGTTGAACCTTGCCCACGGGATTGAGG
TTGAACGCGCGCACCTCCTCTCGGATGTCATCGAGAAGATTGAAAGGGCC
CCGGTCGGAGAGGAGTACTACGAAAATGCTTCCATCTCCTACACCGTGAA
GAAGAGCGAGGAGCTTTACGGTCGACTGCAGAAAGCGGGAGCGTGGGCGC
CGGTGTAAAAGAGCGTGTACAGTTGCTACTTAAGTGGGATGGCTGCCATG
CTTGTGTGCTGGTAACCATTCAATCAGAGGGAAATTTAGCTCCATCATGC
TTTTTTCTTCACGTTGGCATATCTCATTTTTCTTTCTGTTGTAGCTGTCT
ATGAATGTATTATGAACCACATCGAAGATT

protein sequence of rna3408

>rna3408-protein ID=rna3408-protein|Name=rna3408|organism=Nannochloropsis gaditana|type=polypeptide|length=396bp
MPIAASQLSFFLVSSILLSVAALSWKRRRIGSKWSATNLIHLRDFIMEEV
LTDEVTPSPDGYTVLLGRFTWQGRDEKAILKMRPEQLPARDNAVTREHSH
TGKGILKNGFWVSCKRQSLHRALSHLSLRVQLESGAEYGYYSGSLSPLSM
AYLGIPLTYHIEVIAPASPRQIVRAHVEKRVLIRESPALYRVALGPLADE
VRGEGRSLQWVYNILEHKKEAERIVFEDPPDPLDSSKGFVLVPDPKWKSH
PDPSRTPKEEWRHHPSTSGLACLAIVHDRSIGSLRDLRRRHLPLLQSLLA
KGLAAIEAVYGVGKEEVRVFVHYVPQFFHFHVHFSRLNLAHGIEVERAHL
LSDVIEKIERAPVGEEYYENASISYTVKKSEELYGRLQKAGAWAPV

mRNA from alignment at CM002461.1:337000..338842-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna3408 ID=rna3408|Name=rna3408|organism=Nannochloropsis gaditana|type=mRNA|length=1843bp|location=Sequence derived from alignment at CM002461.1:337000..338842- (Nannochloropsis gaditana)
ACTAAGCGGGCCATATGATCGTGTGGCCGGGCATCGATCTGAGTTGCGTC
ATCGCGGAAGAGGCGGAGGGGGGAGGTCGGTCGCCTCCCCAAGTCACTGC
GTAATTATTGCAGGGCGCTTGCTAAAAGAAGGCCAGAATTCCTCCTTGCT
ACAACGTTGACAAAATAATTCACTTTTCATACATCCACATCCACGGCACG
ACGGATAGCCCAAGGGGTGGTTTCTGAGAAATTGCCTCCGACTACTTGCC
TCCTGCGCCACCCTCCTCAGCTTGTCTCATGCCCATCGCCGCATCGCAAC
TGAGCTTCTTTCTTGTCAGTAGCATATTGTTGAGTGTCGCCGCATTATCA
TGGAAGCGGAGACGAATGTACGTGCAGGAGTGTTGTCGATTTTCCATTAA
TTATCATTCGCCGCTGCAATCTTTTCATCCCTCACCTCCTTTCCCCTTTC
GCCTTCCCACTCGGACTCATTCAAGCGGAAGCAAGTGGAGCGCTACCAAC
CTCATCCATCTTCGTGATTTCATAATGGAAGAGGTCTTGACAGACGAGGT
AACGCCATCTCCTGACGGCTATACTGTTCTCCTGGGGCGTTTTACCTGGC
AAGGCCGGGATGAGAAGGCGATTCTCAAGATGCGGCCAGAGCAGCTGCCA
GCAAGGGACAACGCGGTCACAAGAGAGCATTCACACACCGGAAAAGGTAT
TTTGAAGAATGGTTTCTGGGTGAGCTGTAAACGACAGAGCCTGCACCGAG
CGCTGAGTCACCTGAGCCTCCGCGTGCAGCTGGAAAGCGGGGCAGAGTAC
GGCTACTACTCAGGCAGCCTCTCCCCCCTGTCCATGGCATATCTGGGCAT
CCCTCTGACCTATCACATCGAAGTCATCGCCCCCGCCAGTCCCCGACAGA
TCGTCCGTGCCCACGTGGAAAAGCGGGTGCTGATCCGGGAGTCACCGGCC
CTGTACCGCGTCGCCCTCGGTCCTCTGGCAGACGAGGTGCGGGGGGAGGG
GCGTTCCCTCCAATGGGTGTACAACATCCTTGAGCACAAGAAGGAAGCGG
AGCGCATTGTGTTTGAAGACCCTCCTGACCCCCTGGATTCGTCCAAGGGC
TTCGTTCTGGTCCCGGACCCCAAGTGGAAAAGCCACCCTGACCCCTCCCG
GACTCCCAAAGAGGAGTGGCGCCACCATCCGTCCACGTCTGGGCTTGCCT
GTCTGGCCATCGTGCATGACCGCTCGATCGGCTCGCTCCGGGACTTGCGC
CGAAGACACCTTCCACTTTTGCAGAGCCTGCTGGCTAAGGGATTGGCAGC
GATCGAGGCCGTGTACGGGGTAGGGAAGGAAGAGGTGCGGGTCTTCGTGC
ACTACGTCCCCCAGTTCTTCCATTTCCACGGTACAAAAGTGTCGATGGTG
GATAGGGCGTGCTAGGACGTGTCAAGTTTTTGCTGTCCCTGACTCGGCTC
CTCTCTCCCGTCCCCCCCTCCCAGTGCATTTCTCCAGGTTGAACCTTGCC
CACGGGATTGAGGTTGAACGCGCGCACCTCCTCTCGGATGTCATCGAGAA
GATTGAAAGGGCCCCGGTCGGAGAGGAGTACTACGAAAATGCTTCCATCT
CCTACACCGTGAAGAAGAGCGAGGAGCTTTACGGTCGACTGCAGAAAGCG
GGAGCGTGGGCGCCGGTGTAAAAGAGCGTGTACAGTTGCTACTTAAGTGG
GATGGCTGCCATGCTTGTGTGCTGGTAACCATTCAATCAGAGGGAAATTT
AGCTCCATCATGCTTTTTTCTTCACGTTGGCATATCTCATTTTTCTTTCT
GTTGTAGCTGTCTATGAATGTATTATGAACCACATCGAAGATT

Coding sequence (CDS) from alignment at CM002461.1:337000..338842-

>rna3408 ID=rna3408|Name=rna3408|organism=Nannochloropsis gaditana|type=CDS|length=3573bp|location=Sequence derived from alignment at CM002461.1:337000..338842- (Nannochloropsis gaditana)
TGCATTTCTCCAGGTTGAACCTTGCCCACGGGATTGAGGTTGAACGCGCG
CACCTCCTCTCGGATGTCATCGAGAAGATTGAAAGGGCCCCGGTCGGAGA
GGAGTACTACGAAAATGCTTCCATCTCCTACACCGTGAAGAAGAGCGAGG
AGCTTTACGGTCGACTGCAGAAAGCGGGAGCGTGGGCGCCGGTGTAACGG
AAGCAAGTGGAGCGCTACCAACCTCATCCATCTTCGTGATTTCATAATGG
AAGAGGTCTTGACAGACGAGGTAACGCCATCTCCTGACGGCTATACTGTT
CTCCTGGGGCGTTTTACCTGGCAAGGCCGGGATGAGAAGGCGATTCTCAA
GATGCGGCCAGAGCAGCTGCCAGCAAGGGACAACGCGGTCACAAGAGAGC
ATTCACACACCGGAAAAGGTATTTTGAAGAATGGTTTCTGGGTGAGCTGT
AAACGACAGAGCCTGCACCGAGCGCTGAGTCACCTGAGCCTCCGCGTGCA
GCTGGAAAGCGGGGCAGAGTACGGCTACTACTCAGGCAGCCTCTCCCCCC
TGTCCATGGCATATCTGGGCATCCCTCTGACCTATCACATCGAAGTCATC
GCCCCCGCCAGTCCCCGACAGATCGTCCGTGCCCACGTGGAAAAGCGGGT
GCTGATCCGGGAGTCACCGGCCCTGTACCGCGTCGCCCTCGGTCCTCTGG
CAGACGAGGTGCGGGGGGAGGGGCGTTCCCTCCAATGGGTGTACAACATC
CTTGAGCACAAGAAGGAAGCGGAGCGCATTGTGTTTGAAGACCCTCCTGA
CCCCCTGGATTCGTCCAAGGGCTTCGTTCTGGTCCCGGACCCCAAGTGGA
AAAGCCACCCTGACCCCTCCCGGACTCCCAAAGAGGAGTGGCGCCACCAT
CCGTCCACGTCTGGGCTTGCCTGTCTGGCCATCGTGCATGACCGCTCGAT
CGGCTCGCTCCGGGACTTGCGCCGAAGACACCTTCCACTTTTGCAGAGCC
TGCTGGCTAAGGGATTGGCAGCGATCGAGGCCGTGTACGGGGTAGGGAAG
GAAGAGGTGCGGGTCTTCGTGCACTACGTCCCCCAGTTCTTCCATTTCCA
CGATGCCCATCGCCGCATCGCAACTGAGCTTCTTTCTTGTCAGTAGCATA
TTGTTGAGTGTCGCCGCATTATCATGGAAGCGGAGACGAATTGCATTTCT
CCAGGTTGAACCTTGCCCACGGGATTGAGGTTGAACGCGCGCACCTCCTC
TCGGATGTCATCGAGAAGATTGAAAGGGCCCCGGTCGGAGAGGAGTACTA
CGAAAATGCTTCCATCTCCTACACCGTGAAGAAGAGCGAGGAGCTTTACG
GTCGACTGCAGAAAGCGGGAGCGTGGGCGCCGGTGTAACGGAAGCAAGTG
GAGCGCTACCAACCTCATCCATCTTCGTGATTTCATAATGGAAGAGGTCT
TGACAGACGAGGTAACGCCATCTCCTGACGGCTATACTGTTCTCCTGGGG
CGTTTTACCTGGCAAGGCCGGGATGAGAAGGCGATTCTCAAGATGCGGCC
AGAGCAGCTGCCAGCAAGGGACAACGCGGTCACAAGAGAGCATTCACACA
CCGGAAAAGGTATTTTGAAGAATGGTTTCTGGGTGAGCTGTAAACGACAG
AGCCTGCACCGAGCGCTGAGTCACCTGAGCCTCCGCGTGCAGCTGGAAAG
CGGGGCAGAGTACGGCTACTACTCAGGCAGCCTCTCCCCCCTGTCCATGG
CATATCTGGGCATCCCTCTGACCTATCACATCGAAGTCATCGCCCCCGCC
AGTCCCCGACAGATCGTCCGTGCCCACGTGGAAAAGCGGGTGCTGATCCG
GGAGTCACCGGCCCTGTACCGCGTCGCCCTCGGTCCTCTGGCAGACGAGG
TGCGGGGGGAGGGGCGTTCCCTCCAATGGGTGTACAACATCCTTGAGCAC
AAGAAGGAAGCGGAGCGCATTGTGTTTGAAGACCCTCCTGACCCCCTGGA
TTCGTCCAAGGGCTTCGTTCTGGTCCCGGACCCCAAGTGGAAAAGCCACC
CTGACCCCTCCCGGACTCCCAAAGAGGAGTGGCGCCACCATCCGTCCACG
TCTGGGCTTGCCTGTCTGGCCATCGTGCATGACCGCTCGATCGGCTCGCT
CCGGGACTTGCGCCGAAGACACCTTCCACTTTTGCAGAGCCTGCTGGCTA
AGGGATTGGCAGCGATCGAGGCCGTGTACGGGGTAGGGAAGGAAGAGGTG
CGGGTCTTCGTGCACTACGTCCCCCAGTTCTTCCATTTCCACGATGCCCA
TCGCCGCATCGCAACTGAGCTTCTTTCTTGTCAGTAGCATATTGTTGAGT
GTCGCCGCATTATCATGGAAGCGGAGACGAATTGCATTTCTCCAGGTTGA
ACCTTGCCCACGGGATTGAGGTTGAACGCGCGCACCTCCTCTCGGATGTC
ATCGAGAAGATTGAAAGGGCCCCGGTCGGAGAGGAGTACTACGAAAATGC
TTCCATCTCCTACACCGTGAAGAAGAGCGAGGAGCTTTACGGTCGACTGC
AGAAAGCGGGAGCGTGGGCGCCGGTGTAACGGAAGCAAGTGGAGCGCTAC
CAACCTCATCCATCTTCGTGATTTCATAATGGAAGAGGTCTTGACAGACG
AGGTAACGCCATCTCCTGACGGCTATACTGTTCTCCTGGGGCGTTTTACC
TGGCAAGGCCGGGATGAGAAGGCGATTCTCAAGATGCGGCCAGAGCAGCT
GCCAGCAAGGGACAACGCGGTCACAAGAGAGCATTCACACACCGGAAAAG
GTATTTTGAAGAATGGTTTCTGGGTGAGCTGTAAACGACAGAGCCTGCAC
CGAGCGCTGAGTCACCTGAGCCTCCGCGTGCAGCTGGAAAGCGGGGCAGA
GTACGGCTACTACTCAGGCAGCCTCTCCCCCCTGTCCATGGCATATCTGG
GCATCCCTCTGACCTATCACATCGAAGTCATCGCCCCCGCCAGTCCCCGA
CAGATCGTCCGTGCCCACGTGGAAAAGCGGGTGCTGATCCGGGAGTCACC
GGCCCTGTACCGCGTCGCCCTCGGTCCTCTGGCAGACGAGGTGCGGGGGG
AGGGGCGTTCCCTCCAATGGGTGTACAACATCCTTGAGCACAAGAAGGAA
GCGGAGCGCATTGTGTTTGAAGACCCTCCTGACCCCCTGGATTCGTCCAA
GGGCTTCGTTCTGGTCCCGGACCCCAAGTGGAAAAGCCACCCTGACCCCT
CCCGGACTCCCAAAGAGGAGTGGCGCCACCATCCGTCCACGTCTGGGCTT
GCCTGTCTGGCCATCGTGCATGACCGCTCGATCGGCTCGCTCCGGGACTT
GCGCCGAAGACACCTTCCACTTTTGCAGAGCCTGCTGGCTAAGGGATTGG
CAGCGATCGAGGCCGTGTACGGGGTAGGGAAGGAAGAGGTGCGGGTCTTC
GTGCACTACGTCCCCCAGTTCTTCCATTTCCACGATGCCCATCGCCGCAT
CGCAACTGAGCTTCTTTCTTGTCAGTAGCATATTGTTGAGTGTCGCCGCA
TTATCATGGAAGCGGAGACGAAT

Synonyms

Publications