rna3407, rna3407 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna3407
Unique Name	rna3407
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1868
Alignment location	CM002461.1:337000..338842 -

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Properties


Property Name	Value
Product	histidine triad protein member
Orig transcript id	gnl\|cribi\|Naga_100080g26.2842.mrna
Orig protein id	gnl\|cribi\|Naga_100080g26.2842
Gbkey	mRNA
Note	encoded by transcript variant 2; alternatively spliced

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002461.1	supercontig	CM002461.1:337000..338842 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100080g26	gene3282	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna3407	rna3407-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM27278.1	cds3398	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002461.1:337000..338842-
coding sequence from alignment at CM002461.1:337000..338842-

mRNA sequence

>rna3407 ID=rna3407|Name=rna3407|organism=Nannochloropsis gaditana|type=mRNA|length=1868bp
CAGGGACGGCCCATCTCTCCTCTGCTGCTAAGGCACGCCCAGTTCCTCCA
TTTGCACAAAAGTATGGTTTAGGACTTCAAACATATTTACGGGGAATGAC
ATCTGGGACTTTTTTGATCGGGGGGCAGGACTAAAGGCTTAAAAGTTCTG
GAAGCTGGATGTGGGCTGACGAGCAAGTAGTGCGGCGATAGGCTTAAGCA
AATGGGTACCTTACGTTTGTGAACATACATACCTCCTCATACATTCAGTG
ATGGAAGGATTTTGATATCTCAACTATTCGGGAAGCACATTTGTGACTGG
CGAGCATCATTACGACCAGCAAAGTGGACCGGAATACAACTCATGGTGAG
CTTGACTTCACCACTACCTCGCGTGTATCCAAGCTCGCGCAGTTCTTCCC
AAGCCTGCCGCTGGACGGCCTGGCAAGGTCGTGAATGGCTCCTTCTCCTG
GTCGTGTCATCGCTTGGCTCGGTTGCCCTAGTGTATCAATTTGGTGGCCG
CGTCGATCAGCACTTGGCTGTTCGCCGATTCGCCTTGCGTCTCCAATCCC
GTACCACGAGCGCCGCTGAGTATTGTCCTGAATACACCCCTGTTTTGGAT
CAGGCGCTCCATACCTACAAGAATCCGAAGAGATCATTTTCAAGAAAAGC
TCAGTCAAGAGTCGACGCTTTCATAGCTGGAACAGGGGGGATGCGAGTGG
CGGTCTCAGCGGATAACGGCCGAGTTAGCATGTTACCAGTAAAGCGTGAC
CGGCAGCGCATCGCAGACTTGCTGGCAAACATCCAGCTTGCTCAGAGACT
GTTCGGAAATTTTCCGTTCGACTTTGAATTTTGGTACAATTCGGGGGACA
TGCCAGCATTGCCGCGGGCTGTCTTTCCATCCGATGAGGGGGTCCTGCTG
CCCCCTCTAGGATACACTACCACGGACGGGCACTACGATGTGTCCATTCC
CTACCTCAGACAAGCCGTCTGGAGCGAAGAAAGAGAGATGCATACCCTCC
ACTCCCTGGTGCAGAGCCATCCCTGGTCGCAAAAGCTGCCCAAGGGGGTC
TGGCGGGGAAGCACGACGGGAGCGGCCGCCGTCGACGCCTCCAACTGCTG
GACATTGCCGCGCGCGGTTCTGGTGAATGTCTCCCTTGAGAACCCCGGCT
TGCTCGACGCTCGATTCACCGCCTGCAAGCACTGCTCCCGAGACACCGCC
GTGGCGTATGAAACGGCCGGGTATGGCTACGCGCCCTTCTTAAGCGTGCA
AGAGCAGTTTCGCTACCAGGTCTTGATCGACGTGGACGGTAACTCATGGT
CCAGCCGCTTTGCGACACTCTTAAGCATCAACTCGGCCGTGGTTAAGCAG
GAGACGCAATACGTGGAGTTCTTCAGACCGCTGCTCCAGCCTTACAAGCA
CTACTTGCCTGTGAAGGACGACCTTTCGGATCTGGAAGCACTCTTGAAAG
AGCGATTGGACGCATCGAAGAATTCAACAGCGCACATGGAATTGCAAGAG
ATGGGGGCGGAAAGCACGAGGCTGTACATGCGTTCACTGGTGCCGTCGAA
ACAGCTGTGCTACCTCCATCGGGTCCTTGAGGTATACAGTCGGGTCTTCG
AACGGGGGTCAGGAATATAGTTGCGTGGCAGGTGTAGGGGGAGACTTGAC
TATTTTCCCCGCATTTTCGTCACAAATCTTACACTAGCGTACATGCAGGA
TGTCAAATAAATAGCTGAACTGTAGCCGTAAGAAAATCTTCGATGTGGTT
CATAATACATTCATAGACAGCTACAACAGAAAGAAAAATGAGATATGCCA
ACGTGAAGAAAAAAGCATGATGGAGCTAAATTTCCCTCTGATTGAATGGT
TACCAGCACACAAGCATG

protein sequence of rna3407

>rna3407-protein ID=rna3407-protein|Name=rna3407|organism=Nannochloropsis gaditana|type=polypeptide|length=316bp
MPIAASQLSFFLVSSILLSVAALSWKRRRIGSKWSATNLIHLRDFIMEEV
LTDEVTPSPDGYTVLLGRFTWQGRDEKAILKMRPEQLPARDNAVTREHSH
TGKGILKNGFWVSCKRQSLHRALSHLSLRVQLESGAEYGYYSGSLSPLSM
AYLGIPLTYHIEVIAPASPRQIVRAHVEKRVLIRESPALYRVALGPLADE
VRGEGRSLQWVYNILEHKKEAERIVFEDPPDPLDSSKGFVLVPDPKWKSH
PDPSRTPKEEWRHHPSTSGLACLAIVHDRSIGSLRDLRRRHLPLLQSLLA
KGLAAIEAVYGCISPG

mRNA from alignment at CM002461.1:337000..338842-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna3407 ID=rna3407|Name=rna3407|organism=Nannochloropsis gaditana|type=mRNA|length=1843bp|location=Sequence derived from alignment at CM002461.1:337000..338842- (Nannochloropsis gaditana)
ACTAAGCGGGCCATATGATCGTGTGGCCGGGCATCGATCTGAGTTGCGTC
ATCGCGGAAGAGGCGGAGGGGGGAGGTCGGTCGCCTCCCCAAGTCACTGC
GTAATTATTGCAGGGCGCTTGCTAAAAGAAGGCCAGAATTCCTCCTTGCT
ACAACGTTGACAAAATAATTCACTTTTCATACATCCACATCCACGGCACG
ACGGATAGCCCAAGGGGTGGTTTCTGAGAAATTGCCTCCGACTACTTGCC
TCCTGCGCCACCCTCCTCAGCTTGTCTCATGCCCATCGCCGCATCGCAAC
TGAGCTTCTTTCTTGTCAGTAGCATATTGTTGAGTGTCGCCGCATTATCA
TGGAAGCGGAGACGAATGTACGTGCAGGAGTGTTGTCGATTTTCCATTAA
TTATCATTCGCCGCTGCAATCTTTTCATCCCTCACCTCCTTTCCCCTTTC
GCCTTCCCACTCGGACTCATTCAAGCGGAAGCAAGTGGAGCGCTACCAAC
CTCATCCATCTTCGTGATTTCATAATGGAAGAGGTCTTGACAGACGAGGT
AACGCCATCTCCTGACGGCTATACTGTTCTCCTGGGGCGTTTTACCTGGC
AAGGCCGGGATGAGAAGGCGATTCTCAAGATGCGGCCAGAGCAGCTGCCA
GCAAGGGACAACGCGGTCACAAGAGAGCATTCACACACCGGAAAAGGTAT
TTTGAAGAATGGTTTCTGGGTGAGCTGTAAACGACAGAGCCTGCACCGAG
CGCTGAGTCACCTGAGCCTCCGCGTGCAGCTGGAAAGCGGGGCAGAGTAC
GGCTACTACTCAGGCAGCCTCTCCCCCCTGTCCATGGCATATCTGGGCAT
CCCTCTGACCTATCACATCGAAGTCATCGCCCCCGCCAGTCCCCGACAGA
TCGTCCGTGCCCACGTGGAAAAGCGGGTGCTGATCCGGGAGTCACCGGCC
CTGTACCGCGTCGCCCTCGGTCCTCTGGCAGACGAGGTGCGGGGGGAGGG
GCGTTCCCTCCAATGGGTGTACAACATCCTTGAGCACAAGAAGGAAGCGG
AGCGCATTGTGTTTGAAGACCCTCCTGACCCCCTGGATTCGTCCAAGGGC
TTCGTTCTGGTCCCGGACCCCAAGTGGAAAAGCCACCCTGACCCCTCCCG
GACTCCCAAAGAGGAGTGGCGCCACCATCCGTCCACGTCTGGGCTTGCCT
GTCTGGCCATCGTGCATGACCGCTCGATCGGCTCGCTCCGGGACTTGCGC
CGAAGACACCTTCCACTTTTGCAGAGCCTGCTGGCTAAGGGATTGGCAGC
GATCGAGGCCGTGTACGGGGTAGGGAAGGAAGAGGTGCGGGTCTTCGTGC
ACTACGTCCCCCAGTTCTTCCATTTCCACGGTACAAAAGTGTCGATGGTG
GATAGGGCGTGCTAGGACGTGTCAAGTTTTTGCTGTCCCTGACTCGGCTC
CTCTCTCCCGTCCCCCCCTCCCAGTGCATTTCTCCAGGTTGAACCTTGCC
CACGGGATTGAGGTTGAACGCGCGCACCTCCTCTCGGATGTCATCGAGAA
GATTGAAAGGGCCCCGGTCGGAGAGGAGTACTACGAAAATGCTTCCATCT
CCTACACCGTGAAGAAGAGCGAGGAGCTTTACGGTCGACTGCAGAAAGCG
GGAGCGTGGGCGCCGGTGTAAAAGAGCGTGTACAGTTGCTACTTAAGTGG
GATGGCTGCCATGCTTGTGTGCTGGTAACCATTCAATCAGAGGGAAATTT
AGCTCCATCATGCTTTTTTCTTCACGTTGGCATATCTCATTTTTCTTTCT
GTTGTAGCTGTCTATGAATGTATTATGAACCACATCGAAGATT

Coding sequence (CDS) from alignment at CM002461.1:337000..338842-

>rna3407 ID=rna3407|Name=rna3407|organism=Nannochloropsis gaditana|type=CDS|length=2853bp|location=Sequence derived from alignment at CM002461.1:337000..338842- (Nannochloropsis gaditana)
TGCATTTCTCCAGGTTGACGGAAGCAAGTGGAGCGCTACCAACCTCATCC
ATCTTCGTGATTTCATAATGGAAGAGGTCTTGACAGACGAGGTAACGCCA
TCTCCTGACGGCTATACTGTTCTCCTGGGGCGTTTTACCTGGCAAGGCCG
GGATGAGAAGGCGATTCTCAAGATGCGGCCAGAGCAGCTGCCAGCAAGGG
ACAACGCGGTCACAAGAGAGCATTCACACACCGGAAAAGGTATTTTGAAG
AATGGTTTCTGGGTGAGCTGTAAACGACAGAGCCTGCACCGAGCGCTGAG
TCACCTGAGCCTCCGCGTGCAGCTGGAAAGCGGGGCAGAGTACGGCTACT
ACTCAGGCAGCCTCTCCCCCCTGTCCATGGCATATCTGGGCATCCCTCTG
ACCTATCACATCGAAGTCATCGCCCCCGCCAGTCCCCGACAGATCGTCCG
TGCCCACGTGGAAAAGCGGGTGCTGATCCGGGAGTCACCGGCCCTGTACC
GCGTCGCCCTCGGTCCTCTGGCAGACGAGGTGCGGGGGGAGGGGCGTTCC
CTCCAATGGGTGTACAACATCCTTGAGCACAAGAAGGAAGCGGAGCGCAT
TGTGTTTGAAGACCCTCCTGACCCCCTGGATTCGTCCAAGGGCTTCGTTC
TGGTCCCGGACCCCAAGTGGAAAAGCCACCCTGACCCCTCCCGGACTCCC
AAAGAGGAGTGGCGCCACCATCCGTCCACGTCTGGGCTTGCCTGTCTGGC
CATCGTGCATGACCGCTCGATCGGCTCGCTCCGGGACTTGCGCCGAAGAC
ACCTTCCACTTTTGCAGAGCCTGCTGGCTAAGGGATTGGCAGCGATCGAG
GCCGTGTACGGGATGCCCATCGCCGCATCGCAACTGAGCTTCTTTCTTGT
CAGTAGCATATTGTTGAGTGTCGCCGCATTATCATGGAAGCGGAGACGAA
TTGCATTTCTCCAGGTTGACGGAAGCAAGTGGAGCGCTACCAACCTCATC
CATCTTCGTGATTTCATAATGGAAGAGGTCTTGACAGACGAGGTAACGCC
ATCTCCTGACGGCTATACTGTTCTCCTGGGGCGTTTTACCTGGCAAGGCC
GGGATGAGAAGGCGATTCTCAAGATGCGGCCAGAGCAGCTGCCAGCAAGG
GACAACGCGGTCACAAGAGAGCATTCACACACCGGAAAAGGTATTTTGAA
GAATGGTTTCTGGGTGAGCTGTAAACGACAGAGCCTGCACCGAGCGCTGA
GTCACCTGAGCCTCCGCGTGCAGCTGGAAAGCGGGGCAGAGTACGGCTAC
TACTCAGGCAGCCTCTCCCCCCTGTCCATGGCATATCTGGGCATCCCTCT
GACCTATCACATCGAAGTCATCGCCCCCGCCAGTCCCCGACAGATCGTCC
GTGCCCACGTGGAAAAGCGGGTGCTGATCCGGGAGTCACCGGCCCTGTAC
CGCGTCGCCCTCGGTCCTCTGGCAGACGAGGTGCGGGGGGAGGGGCGTTC
CCTCCAATGGGTGTACAACATCCTTGAGCACAAGAAGGAAGCGGAGCGCA
TTGTGTTTGAAGACCCTCCTGACCCCCTGGATTCGTCCAAGGGCTTCGTT
CTGGTCCCGGACCCCAAGTGGAAAAGCCACCCTGACCCCTCCCGGACTCC
CAAAGAGGAGTGGCGCCACCATCCGTCCACGTCTGGGCTTGCCTGTCTGG
CCATCGTGCATGACCGCTCGATCGGCTCGCTCCGGGACTTGCGCCGAAGA
CACCTTCCACTTTTGCAGAGCCTGCTGGCTAAGGGATTGGCAGCGATCGA
GGCCGTGTACGGGATGCCCATCGCCGCATCGCAACTGAGCTTCTTTCTTG
TCAGTAGCATATTGTTGAGTGTCGCCGCATTATCATGGAAGCGGAGACGA
ATTGCATTTCTCCAGGTTGACGGAAGCAAGTGGAGCGCTACCAACCTCAT
CCATCTTCGTGATTTCATAATGGAAGAGGTCTTGACAGACGAGGTAACGC
CATCTCCTGACGGCTATACTGTTCTCCTGGGGCGTTTTACCTGGCAAGGC
CGGGATGAGAAGGCGATTCTCAAGATGCGGCCAGAGCAGCTGCCAGCAAG
GGACAACGCGGTCACAAGAGAGCATTCACACACCGGAAAAGGTATTTTGA
AGAATGGTTTCTGGGTGAGCTGTAAACGACAGAGCCTGCACCGAGCGCTG
AGTCACCTGAGCCTCCGCGTGCAGCTGGAAAGCGGGGCAGAGTACGGCTA
CTACTCAGGCAGCCTCTCCCCCCTGTCCATGGCATATCTGGGCATCCCTC
TGACCTATCACATCGAAGTCATCGCCCCCGCCAGTCCCCGACAGATCGTC
CGTGCCCACGTGGAAAAGCGGGTGCTGATCCGGGAGTCACCGGCCCTGTA
CCGCGTCGCCCTCGGTCCTCTGGCAGACGAGGTGCGGGGGGAGGGGCGTT
CCCTCCAATGGGTGTACAACATCCTTGAGCACAAGAAGGAAGCGGAGCGC
ATTGTGTTTGAAGACCCTCCTGACCCCCTGGATTCGTCCAAGGGCTTCGT
TCTGGTCCCGGACCCCAAGTGGAAAAGCCACCCTGACCCCTCCCGGACTC
CCAAAGAGGAGTGGCGCCACCATCCGTCCACGTCTGGGCTTGCCTGTCTG
GCCATCGTGCATGACCGCTCGATCGGCTCGCTCCGGGACTTGCGCCGAAG
ACACCTTCCACTTTTGCAGAGCCTGCTGGCTAAGGGATTGGCAGCGATCG
AGGCCGTGTACGGGATGCCCATCGCCGCATCGCAACTGAGCTTCTTTCTT
GTCAGTAGCATATTGTTGAGTGTCGCCGCATTATCATGGAAGCGGAGACG
AAT

Synonyms

Publications