EWM27278.1, cds3398 (CDS) Nannochloropsis gaditana

Overview
NameEWM27278.1
Unique Namecds3398
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002461.1:338476..338564 -
Alignment locationCM002461.1:337524..338367 -
Alignment locationCM002461.1:337351..337368 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM27278.1
Producthistidine triad protein member
Orig transcript idgnl|cribi|Naga_100080g26.2842.mrna
GbkeyCDS
Noteencoded by transcript variant 2; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002461.1supercontigCM002461.1:338476..338564 -
CM002461.1supercontigCM002461.1:337524..338367 -
CM002461.1supercontigCM002461.1:337351..337368 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006139nucleobase-containing compound metabolic process
GO:0009056catabolic process
GO:0000290deadenylation-dependent decapping of nuclear-transcribed mRNA
Vocabulary: Molecular Function
TermDefinition
GO:0016787hydrolase activity
GO:0003824catalytic activity
Vocabulary: INTERPRO
TermDefinition
IPR008594DcpS/DCS2
IPR011146HIT-like
Homology
BLAST of EWM27278.1 vs. NCBI_GenBank
Match: gi|585109460|gb|EWM27278.1| (histidine triad protein member [Nannochloropsis gaditana])

HSP 1 Score: 641.343 bits (1653), Expect = 0.000e+0
Identity = 316/316 (100.00%), Postives = 316/316 (100.00%), Query Frame = 0
Query:    1 MPIAASQLSFFLVSSILLSVAALSWKRRRIGSKWSATNLIHLRDFIMEEVLTDEVTPSPDGYTVLLGRFTWQGRDEKAILKMRPEQLPARDNAVTREHSHTGKGILKNGFWVSCKRQSLHRALSHLSLRVQLESGAEYGYYSGSLSPLSMAYLGIPLTYHIEVIAPASPRQIVRAHVEKRVLIRESPALYRVALGPLADEVRGEGRSLQWVYNILEHKKEAERIVFEDPPDPLDSSKGFVLVPDPKWKSHPDPSRTPKEEWRHHPSTSGLACLAIVHDRSIGSLRDLRRRHLPLLQSLLAKGLAAIEAVYGCISPG 316
            MPIAASQLSFFLVSSILLSVAALSWKRRRIGSKWSATNLIHLRDFIMEEVLTDEVTPSPDGYTVLLGRFTWQGRDEKAILKMRPEQLPARDNAVTREHSHTGKGILKNGFWVSCKRQSLHRALSHLSLRVQLESGAEYGYYSGSLSPLSMAYLGIPLTYHIEVIAPASPRQIVRAHVEKRVLIRESPALYRVALGPLADEVRGEGRSLQWVYNILEHKKEAERIVFEDPPDPLDSSKGFVLVPDPKWKSHPDPSRTPKEEWRHHPSTSGLACLAIVHDRSIGSLRDLRRRHLPLLQSLLAKGLAAIEAVYGCISPG
Sbjct:    1 MPIAASQLSFFLVSSILLSVAALSWKRRRIGSKWSATNLIHLRDFIMEEVLTDEVTPSPDGYTVLLGRFTWQGRDEKAILKMRPEQLPARDNAVTREHSHTGKGILKNGFWVSCKRQSLHRALSHLSLRVQLESGAEYGYYSGSLSPLSMAYLGIPLTYHIEVIAPASPRQIVRAHVEKRVLIRESPALYRVALGPLADEVRGEGRSLQWVYNILEHKKEAERIVFEDPPDPLDSSKGFVLVPDPKWKSHPDPSRTPKEEWRHHPSTSGLACLAIVHDRSIGSLRDLRRRHLPLLQSLLAKGLAAIEAVYGCISPG 316          
BLAST of EWM27278.1 vs. NCBI_GenBank
Match: gi|585109459|gb|EWM27277.1| (histidine triad protein member [Nannochloropsis gaditana])

HSP 1 Score: 630.943 bits (1626), Expect = 0.000e+0
Identity = 311/312 (99.68%), Postives = 311/312 (99.68%), Query Frame = 0
Query:    1 MPIAASQLSFFLVSSILLSVAALSWKRRRIGSKWSATNLIHLRDFIMEEVLTDEVTPSPDGYTVLLGRFTWQGRDEKAILKMRPEQLPARDNAVTREHSHTGKGILKNGFWVSCKRQSLHRALSHLSLRVQLESGAEYGYYSGSLSPLSMAYLGIPLTYHIEVIAPASPRQIVRAHVEKRVLIRESPALYRVALGPLADEVRGEGRSLQWVYNILEHKKEAERIVFEDPPDPLDSSKGFVLVPDPKWKSHPDPSRTPKEEWRHHPSTSGLACLAIVHDRSIGSLRDLRRRHLPLLQSLLAKGLAAIEAVYGC 312
            MPIAASQLSFFLVSSILLSVAALSWKRRRIGSKWSATNLIHLRDFIMEEVLTDEVTPSPDGYTVLLGRFTWQGRDEKAILKMRPEQLPARDNAVTREHSHTGKGILKNGFWVSCKRQSLHRALSHLSLRVQLESGAEYGYYSGSLSPLSMAYLGIPLTYHIEVIAPASPRQIVRAHVEKRVLIRESPALYRVALGPLADEVRGEGRSLQWVYNILEHKKEAERIVFEDPPDPLDSSKGFVLVPDPKWKSHPDPSRTPKEEWRHHPSTSGLACLAIVHDRSIGSLRDLRRRHLPLLQSLLAKGLAAIEAVYG 
Sbjct:    1 MPIAASQLSFFLVSSILLSVAALSWKRRRIGSKWSATNLIHLRDFIMEEVLTDEVTPSPDGYTVLLGRFTWQGRDEKAILKMRPEQLPARDNAVTREHSHTGKGILKNGFWVSCKRQSLHRALSHLSLRVQLESGAEYGYYSGSLSPLSMAYLGIPLTYHIEVIAPASPRQIVRAHVEKRVLIRESPALYRVALGPLADEVRGEGRSLQWVYNILEHKKEAERIVFEDPPDPLDSSKGFVLVPDPKWKSHPDPSRTPKEEWRHHPSTSGLACLAIVHDRSIGSLRDLRRRHLPLLQSLLAKGLAAIEAVYGV 312          
BLAST of EWM27278.1 vs. NCBI_GenBank
Match: gi|299470115|emb|CBN78144.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 181.415 bits (459), Expect = 5.546e-51
Identity = 113/302 (37.42%), Postives = 158/302 (52.32%), Query Frame = 0
Query:   16 ILLSVAALSWKRRRIGSKWSATNLI---HLRDFIMEEVLTDEVTPSPDGYTV-LLGRFTWQGRDEKAILKMRPEQLPARDNAVTREHSHTGKGILKNGFWVSCKRQSLHRALSHLSLRVQLESGAEYGYYSGSLSPLSMAYLGIP-LTYHIEVIAPASPRQIVRAHVEKRVLIRESPALYRVALGPLADEVRGEGRSLQWVYNILEHKKEAERIVFEDPPDPLDSSKGFVLVPDPKWKSHPDPSRTPKEEWRHHPSTSGLACLAIVHDRSIGSLRDLRRRHLPLLQSLLAKGLAAIEAVYGC 312
            + + VA   W   R G K   + L     LR F  EEVL DE     DG  V  LGRF WQ   E A++K+  + L                G+  N              LS LS+R++ ESGAEY +Y+ S+S       G+   +Y +EV+APAS R + R       ++ E+  ++    GP  D + G+G+SL W++N+L   KEAER+++ED     D   GF+L  D KW++HPD S  P+ EW  HPS   L CLAI H R I +LRDLR +H+P+L+ +  +G+  IEAVYG 
Sbjct:   17 LAIGVAVACWAIARRGRKSGTSPLAGIRSLRGFEPEEVLKDE----DDGRVVTFLGRFAWQKEGEVALVKLIAKPLSL-------------SGLKDN--------------LSRLSVRLKSESGAEYAFYNCSMSLWHTFLRGLEGNSYSLEVVAPASERTVNRNRPVTTAMLTETAEMHASVTGPHMDRIVGDGKSLSWLFNVLSKDKEAERVLYEDE----DPEHGFLLNIDTKWRTHPDISTVPRHEWEGHPSVGELYCLAISHQRGIRTLRDLRAKHVPMLKEIYGRGVETIEAVYGV 283          
BLAST of EWM27278.1 vs. NCBI_GenBank
Match: gi|922863927|gb|KOO31279.1| (scavenger mRNA-decapping enzyme [Chrysochromulina sp. CCMP291])

HSP 1 Score: 155.221 bits (391), Expect = 1.604e-41
Identity = 100/251 (39.84%), Postives = 131/251 (52.19%), Query Frame = 0
Query:   64 VLLGRFTWQGRDEKAILKMRPEQLPARDNAVTREHSHTGKGILKNGFWVSCKRQSLHRALSHLSLRVQLESGAEYGYYSGSLSPLSMAYL-GIPLTYHIEVIAPASPRQIVRAHVEKRVLIRESPALYRVALGPLADEVRGEGRSLQWVYNILEHKKEAERIVFEDPPDPLDSSKGFVLVPDPKWKSHPD--PSRTPKEEWRHHPSTSGLACLAIVHDRSIGSLRDLRRRHLPLLQSLLAKGLAAIEAVYG 311
            V+LGRF+WQ + E A++K+ P+ L                  L +G             L  L + V   SGAEY YY G  S  S+    G+   Y +EVIAPAS +QI R   E+  LI E  ALY   + P  + +  + +++ WV N+L  KKE ER++F D     D  +GF+L  D KWKSHP        +  WR H S   L CLAI H R + SLRDLR RHLPLL+ +L +G   IEAVYG
Sbjct:    3 VVLGRFSWQAKGETALVKLVPKPLS-----------------LASGL------------LGALDVNVSSYSGAEYCYYDGRCSLSSLCTTAGLRPAYSVEVIAPASEKQIARLRPERGTLITEDAALYASVVQPFIESM--DPKAIAWVANLLALKKETERLLFNDS----DPERGFLLNIDTKWKSHPPCVSDEFARVAWRCHASVQDLYCLAICHRRDLRSLRDLRARHLPLLRHILHEGCRVIEAVYG 218          
BLAST of EWM27278.1 vs. NCBI_GenBank
Match: gi|551614506|ref|XP_005788173.1| (hypothetical protein EMIHUDRAFT_227266 [Emiliania huxleyi CCMP1516] >gi|485641601|gb|EOD35744.1| hypothetical protein EMIHUDRAFT_227266 [Emiliania huxleyi CCMP1516])

HSP 1 Score: 134.035 bits (336), Expect = 2.833e-33
Identity = 98/279 (35.13%), Postives = 137/279 (49.10%), Query Frame = 0
Query:   11 FLVSSILLSVAALSWKRRRIGSKWSATNLIHLRDFIMEEVLTDEVTPSPDGYTVLLGRFTWQGRDEKAILKMRPEQLPARDNAVTREHSHTGKGILKNGFWVSCKRQSLHRALSHLSLRVQLESGAEYGYYSGSLSPLSMAYLGIPLTYHIEVIAPASPRQIVRAHVEKRVLIRESPALYRVALGPLADEVRGEGRSLQWVYNILEHKKEAERIVFEDPPDPLDSSKGFVLVPDPKWKSHPDPSRTP--KEEWRHHPSTSGLACLAIVHDRSIGSLRDL 287
            F V+ + L++      RR  G     ++L  L  F   EVL++      +G+ VLLG F+WQ   E+A++K+         +AV R  S                        +HL   +   SGAEY YY GS S  S+  L     + +EVIAPAS +QI R+  +  V + E+ ALY  A+ P  D +  + +S  W+   L+  KEAER++F DP +P     GF+L  D KWKSHP  +  P  +  WR H +   L CLAI H R I SLRDL
Sbjct:   13 FTVAVVSLTLTIRHLLRRARG----VSSLRDLSSFKQSEVLSE-----GEGHAVLLGAFSWQPAGERALVKI---------SAVDRASSDVA---------------------AHLETSLSSYSGAEYAYYRGSASLASV--LWKRPAFALEVIAPASEKQIARSRPQPGVFVTETAALYHAAVAPYIDAL--DPKSTSWIDKCLDLSKEAERVLFNDPAEP----TGFLLNVDTKWKSHPPCTADPQLRASWRGHTAVKDLYCLAICHRRDIRSLRDL 244          
BLAST of EWM27278.1 vs. NCBI_GenBank
Match: gi|612388987|ref|XP_007510014.1| (predicted protein [Bathycoccus prasinos] >gi|412985683|emb|CCO19129.1| predicted protein [Bathycoccus prasinos])

HSP 1 Score: 131.724 bits (330), Expect = 4.094e-32
Identity = 70/191 (36.65%), Postives = 105/191 (54.97%), Query Frame = 0
Query:  134 SGAEYGYYSGSLSPLSMAYLGIPLTYHIEVIAPAS-------------PRQIVRAHVEKRVLIRESPALYRVALGPLADEVRGEGRSLQWVYNILEHKKEAERIVFEDPPDPLDSSKGFVLVPDPKWKSHPDPSRTPKEEWRHHPSTSGLACLAIVHDRSIGSLRDLRRRHLPLLQSLLAKGLAAIEAVYG 311
            SG EYGYY G ++  S  +    ++  ++V+ P                + I R   ++ V+ RE+P  Y  A  P  + +     ++ WV+ IL  +KE ER++F+D     D + GF+L  DPKW +HPDP  TPKE+W +HPST  L CL + H + + SLRDLR  HLP+L+++  KG   I+  YG
Sbjct:   83 SGMEYGYYHGVVNNSSETFFAPYVS--VDVLYPGCLKDESKEAKAKLLAKHISRNQAQRPVIFRENPKTYENAHLPYIEAI--PSSAIGWVHKILNKEKELERLLFDDD----DVNDGFLLNTDPKWTTHPDPKTTPKEQWMNHPSTRELYCLGLCHRKDVRSLRDLRAAHLPMLRAMAKKGREVIKNTYG 265          
BLAST of EWM27278.1 vs. NCBI_GenBank
Match: gi|303275908|ref|XP_003057248.1| (predicted protein [Micromonas pusilla CCMP1545] >gi|226461600|gb|EEH58893.1| predicted protein [Micromonas pusilla CCMP1545])

HSP 1 Score: 128.642 bits (322), Expect = 4.723e-31
Identity = 70/185 (37.84%), Postives = 101/185 (54.59%), Query Frame = 0
Query:  134 SGAEYGYYSGSLSP-------LSMAYLGIPLTYHIEVIAPASPRQIVRAHVEKRVLIRESPALYRVALGPLADEVRGEGRSLQWVYNILEHKKEAERIVFEDPPDPLDSSKGFVLVPDPKWKSHPDPSRTPKEEWRHHPSTSGLACLAIVHDRSIGSLRDLRRRHLPLLQSLLAKGLAAIEAVYG 311
            SG EYGYY G ++        + + Y G       E  A    + + R   +  V+ RE+P  Y  A  P  D +     ++ WVY IL  +KE ER++F+D     D++ GF++  DPKW +HPDP  TPKE+W +HP T  L CL + H + + SLRDLR  HLP+L+++  KG   I+  YG
Sbjct:   77 SGMEYGYYHGVVASEFAPGLSVDVLYPGCLANESEEARAKLLAKHVSRNASQAPVVFRENPRAYAAAHLPYIDAI--PSSAIGWVYKILNKEKELERLLFDDD----DANDGFLVNTDPKWVTHPDPKATPKEQWMNHPGTRELYCLGLCHRKDVRSLRDLRAAHLPMLRAMARKGREVIKNTYG 255          
BLAST of EWM27278.1 vs. NCBI_GenBank
Match: gi|1210514682|dbj|GAX26377.1| (m7GpppX diphosphatase [Fistulifera solaris])

HSP 1 Score: 125.176 bits (313), Expect = 1.134e-29
Identity = 82/212 (38.68%), Postives = 112/212 (52.83%), Query Frame = 0
Query:  121 RALSHLSLRVQLESGAEYGYYSGS---------LSPLSMAYLGI-------PLTYHIEVIAPASPRQIVRAHVE-KRVLIRESPALYRVALGPLADEVRGEGRSLQWVYNILEHKKEAERIVFEDPPDPLDSSKGFVLVPDPKWKSHPDPSRTPKEEWRHHPSTSGLACLAIVHDRSIGSLRDLRRRHLPLLQSLLAKGLAAIEAVYGCISP 315
            + L H    +  ESGAEY YY+ +         L+ L+ +++GI       PL    E I PAS RQI RA       LI E+P LYR    P   E++  G SL W+ N+L  +KE ER + +        ++ F++  D KW+SHPDP  T +E W  H +   L CLAI+ D+++ SLRDLR  HL +L+ LL      IE  YG ISP
Sbjct:   71 KLLQHYDFHLSSESGAEYSYYNATPRTGLWNSFLTTLT-SFVGITSSPDFGPL--QCEFIYPASDRQIQRASPSPSSRLIHETPELYRHVTEPYIQELKQSG-SLSWIDNVLSGEKEKERCLLD--------TQHFLVNVDTKWRSHPDPKTTSREVWYQHEAVDDLYCLAILKDKNVSSLRDLRGSHLAMLKELLDVCPKVIEKTYG-ISP 269          
BLAST of EWM27278.1 vs. NCBI_GenBank
Match: gi|255074721|ref|XP_002501035.1| (predicted protein [Micromonas commoda] >gi|226516298|gb|ACO62293.1| predicted protein [Micromonas commoda])

HSP 1 Score: 123.25 bits (308), Expect = 5.636e-29
Identity = 95/277 (34.30%), Postives = 127/277 (45.85%), Query Frame = 0
Query:   42 LRDFIMEEVLTDEVTPSPDGYTVLLGRFTWQGRDEKAILKMRPEQLPARDNAVTREHSHTGKGILKNGFWVSCKRQSLHRALSHLSLRVQLESGAEYGYYSGSLSPLSMAYLGIPLTY-------HIEVIAPASPRQIVRAHVEKRVLIRESPALYRVALGPLADEVRGEGRSLQWVYNILEHKKEAERIVFEDPPDPLDSSKGFVLVPDPKWKSHPDPSRTPKEEWRHHPSTSGLACLAIVHDRSIGSLRDLRRRHLPLLQSLLAKGLAAIEAVYG 311
            LR   ++ VL D       G   LLG F   G   +A++K+    +P  D                          +L RA+S LS R    SG EYGYY G+L PL    L + + Y         E       + I R   +  V  RE+   Y  A  P    +  EG ++ WVY IL  +KE ER++F DP +      GF+L  DPKW +HPD + TPK  W+ H ST  L CL + H R + SLRDLRR HLP+L+++   G   I   YG
Sbjct:   17 LRGLKVDRVLND---GKESGVVALLGTFA--GCSTQAVVKLSRPPIPVGDP------------------------DALSRAIS-LSERAPW-SGMEYGYYHGALDPLFAPGLSVDVLYPGCLYDESEEAREKLLKKHISRNTAQAPVAFRETVEAYENAHVPYIRAI-PEG-AVGWVYKILALEKETERLLFNDPTE----DAGFLLNTDPKWTTHPDHNTTPKAAWKGHASTRDLYCLGLCHRRDVKSLRDLRREHLPMLRAMAETGRRVIRDTYG 256          
BLAST of EWM27278.1 vs. NCBI_GenBank
Match: gi|1210516111|dbj|GAX24927.1| (m7GpppX diphosphatase [Fistulifera solaris])

HSP 1 Score: 119.013 bits (297), Expect = 2.430e-27
Identity = 76/207 (36.71%), Postives = 105/207 (50.72%), Query Frame = 0
Query:  121 RALSHLSLRVQLESGAEYGYYSGS-LSPLSMAYLGI--------------PLTYHIEVIAPASPRQIVRAHVE-KRVLIRESPALYRVALGPLADEVRGEGRSLQWVYNILEHKKEAERIVFEDPPDPLDSSKGFVLVPDPKWKSHPDPSRTPKEEWRHHPSTSGLACLAIVHDRSIGSLRDLRRRHLPLLQSLLAKGLAAIEAVYG 311
            + L      +  ESGAEY YY+ +  + L  ++L I              PL    E I PAS RQI+RA        I E+P LY     P   E++  G SL W+ N+L  +KE ER + +        ++ F+L  D KW+SHPDP  T +E W  H +   L CLAI+ D+SI SLRDLR  HL +L+ L+ +    I+  YG
Sbjct:   71 KLLKQYDFHLSSESGAEYSYYNATPRTGLWNSFLAILTSLVGNTSFFNFGPL--QCEFIYPASDRQILRASPSPSSRFIYETPELYHNVTEPYIQELKQSG-SLSWIDNVLSGEKEKERCLLD--------TEHFLLNVDTKWRSHPDPKTTSREVWYQHEAVDDLYCLAILKDKSIASLRDLRGSHLAMLKVLIQECPKVIKKTYG 266          
The following BLAST results are available for this feature:
BLAST of EWM27278.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585109460|gb|EWM27278.1|0.000e+0100.00histidine triad protein member [Nannochloropsis ga... [more]
gi|585109459|gb|EWM27277.1|0.000e+099.68histidine triad protein member [Nannochloropsis ga... [more]
gi|299470115|emb|CBN78144.1|5.546e-5137.42conserved unknown protein [Ectocarpus siliculosus][more]
gi|922863927|gb|KOO31279.1|1.604e-4139.84scavenger mRNA-decapping enzyme [Chrysochromulina ... [more]
gi|551614506|ref|XP_005788173.1|2.833e-3335.13hypothetical protein EMIHUDRAFT_227266 [Emiliania ... [more]
gi|612388987|ref|XP_007510014.1|4.094e-3236.65predicted protein [Bathycoccus prasinos] >gi|41298... [more]
gi|303275908|ref|XP_003057248.1|4.723e-3137.84predicted protein [Micromonas pusilla CCMP1545] >g... [more]
gi|1210514682|dbj|GAX26377.1|1.134e-2938.68m7GpppX diphosphatase [Fistulifera solaris][more]
gi|255074721|ref|XP_002501035.1|5.636e-2934.30predicted protein [Micromonas commoda] >gi|2265162... [more]
gi|1210516111|dbj|GAX24927.1|2.430e-2736.71m7GpppX diphosphatase [Fistulifera solaris][more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna3407rna3407Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications