rna3406, rna3406 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna3406
Unique Name	rna3406
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2220
Alignment location	CM002461.1:335266..337133 +

Link to JBrowse

Properties


Property Name	Value
Product	Lipopolysaccharide-modifying protein
Orig transcript id	gnl\|cribi\|Naga_100080g25.2844.mrna
Orig protein id	gnl\|cribi\|Naga_100080g25.2844
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002461.1	supercontig	CM002461.1:335266..337133 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100080g25	gene3281	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna3406	rna3406-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM27280.1	cds3397	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002461.1:335266..337133+
coding sequence from alignment at CM002461.1:335266..337133+

mRNA sequence

>rna3406 ID=rna3406|Name=rna3406|organism=Nannochloropsis gaditana|type=mRNA|length=2220bp
GTGAACATGGCCTTTCACGATTGAGCCTCATTGCCATCTTTTCATTCAAT
TCGTCGGTAGGGTCGTCGGGGAAGAAGACGTGGGCAAATGTATCAACCGC
AAGGTGGTATGGAGATGAATGCTGTGGTGGCAGAGATTGGCGGGTATGCA
GCGAGGTTGGGGTTTGCGGGCGAAGACTATCCGCGGTCGTATTTTCCATC
CTGCGCCGGGTTTATCCCTCCAGACGACTCTACGACACGTGCAACAAATC
CCAGCAGCTCCAAACAAAACAACAGCAAACAAATACAGCGCAAAGAGTAC
AAATTTGACCTGGGTCACAATGACTCGCGCATGAATGTTCATACTCCCCT
CTCTGGAGGGCTCGTGGAGGACTGGGACATGGTGGAGCAAATATGGCAAC
ACGCGAACAAGACTGCTCTAACCGTTGATTTGGCACAAACACCACTTCTT
CTCATCGAACGAGCCTTCAACACGTCGAAACTTCGGCAAGAATACGCGGA
ATTAATGTTCGAGAAATTTCAGTCGCCTGCCCTCTTCCTTGCCAAGGACA
GTGTATTAAGTTGCTTTGCCTGCGGCAAAACTTCGGGCTTGGTAGTGGAT
ATCGGTGCTGAGACGACAACTGTGGGTCCTGTCCAAGATGGTTGGCTGGA
GGCGAAAGGTCTGATGCGCTCCCATCTGGGCGGGAGGATGGTGGATCGGT
ACCTGCGGGCTTTCCTCGAGAGTGATGGTGTCACCATAGACCCCTTCCTG
GGACAGCCCCCAGTGGCAGGAACGGGGGAGGGGATGAGCGCAAGTTACCG
GGACTTTGCAACGTTGGAGGTGGTCCGCGGGCTGAAGGAAAGCGTCTGCC
GCATGCCCGAGGCCTCGGTGACGCCAAAGGACCCCAAGGACTCGTCGGTC
CCGAAAGCCAATTACGAGCTGCCAGACGGGACGGTGGTGTCGGCGGGATG
GGAGAGATTCCAAGCAGCAGATATCTTGATGAACCCCGAGCCGGCTTGGG
AGTTGATGCCGGAAGGGAGGGAAGAGGAAGACAGCATGCAGGTGGACGGA
GAAGAGGGCGGGAAGGAGGGAGAGGGGGGCTGGAGCAGGGAGTCGTTGCC
GCGCATGGCCGCAACGGCCGTCCGGCGCTGTGAAAAGGAACAACAGTCCC
CCTTGCTGAGCAGTGTGGTCCTAGCCGGAGGTGGGGCGTGCCTGGAAGGG
ACCATGGAGAGGCTCAAAGTGGAGCTGGAAAATGCGATGTACGGCCCCGG
ACAAGCGGGGTCCACGCGAGTGAAGGTTTTGCAGGCAGGACCTCAGGAGA
GAAAGATCTGCGCCTGGTTGGGCGGGTCGATCGTGGGCTCTCTGGGGACA
TTTCATGAGATGTGGGTGAGCAAGGCGGAGTACGGGGAGAGGGGTGCCCG
GGTCGTGGACACTAAATGTCCCTGAGTGAGACAGGAGGGAAGGTTCGTGG
AGGAAGGGAAGGAGGGGCTCTTACATCGATCACGCCTTTCATCGATTGCA
AAGATGATTCTCCGTGCTTTTTCTTGCTTTTTATCAGGTACTTTGGACCT
TGCTAGAGCCATTGCATTGCTCAAGCTCCATCAGCACCTCGCTCCCTTTG
CCCTTTCCCTGACCCTCCACCGCCTTTACATATGCACAATTTTCACCCTG
CGAATCTTACTTCCAGTCTTCAAACACACGTTTGTCCTCTCTTCCCCTCA
GTCTTACTCCTTTCTCGTCTTCCCTACCAACCTGCCGTCTCCACTCGTTT
CTTCCTCCCCCGCCCCTCCGTCTTTCACTCCTTGAGCGAGCAGGGCTGGT
GAGCTTGAAAGGACCTCGGACGCACCGGATACGTCCGACTTTATCGGGTA
CCCAGCGCTCTTTCTGTCCCGTTGCCCGTGTTGCTGCTACTCCCCGTCTT
CGGCACCCGGAGGGTTTGCCTGCTCTTGTCCCTGGAACTTTCCCCCGGCG
CCCGCCATCTCCAGTCGGTGCAGCCGACTCAACAACCCATACACCTGTCG
CCGCCCGTCGAGTTTAATAGGGAGGAAAGGAATGCCAGCCAGGTCGGGCA
GGAGAACCCACAGGAATACCCACATCTGGACGAGCGGCCAGATGGGGAGC
ACTTGGAAGATCACGTGGCCGAGCGCATAGACGATCCAGTACTGGAGCCA
AGGCCTAGGACTATACGTGGGGGGGGACTGCGACCTTCCTCCAGTCTCCT
TCTTGGTGCCCTTCGACCCC

protein sequence of rna3406

>rna3406-protein ID=rna3406-protein|Name=rna3406|organism=Nannochloropsis gaditana|type=polypeptide|length=425bp
MVSLTSPLPRVYPSSRSSSQACRWTAWQGREWLLLLVVSSLGSVALVYQF
GGRVDQHLAVRRFALRLQSRTTSAAEYCPEYTPVLDQALHTYKNPKRSFS
RKAQSRVDAFIAGTGGMRVAVSADNGRVSMLPVKRDRQRIADLLANIQLA
QRLFGNFPFDFEFWYNSGDMPALPRAVFPSDEGVLLPPLGYTTTDGHYDV
SIPYLRQAVWSEEREMHTLHSLVQSHPWSQKLPKGVWRGSTTGAAAVDAS
NCWTLPRAVLVNVSLENPGLLDARFTACKHCSRDTAVAYETAGYGYAPFL
SVQEQFRYQVLIDVDGNSWSSRFATLLSINSAVVKQETQYVEFFRPLLQP
YKHYLPVKDDLSDLEALLKERLDASKNSTAHMELQEMGAESTRLYMRSLV
PSKQLCYLHRVLEVYSRVFERGSGI

mRNA from alignment at CM002461.1:335266..337133+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna3406 ID=rna3406|Name=rna3406|organism=Nannochloropsis gaditana|type=mRNA|length=1868bp|location=Sequence derived from alignment at CM002461.1:335266..337133+ (Nannochloropsis gaditana)
CAGGGACGGCCCATCTCTCCTCTGCTGCTAAGGCACGCCCAGTTCCTCCA
TTTGCACAAAAGTATGGTTTAGGACTTCAAACATATTTACGGGGAATGAC
ATCTGGGACTTTTTTGATCGGGGGGCAGGACTAAAGGCTTAAAAGTTCTG
GAAGCTGGATGTGGGCTGACGAGCAAGTAGTGCGGCGATAGGCTTAAGCA
AATGGGTACCTTACGTTTGTGAACATACATACCTCCTCATACATTCAGTG
ATGGAAGGATTTTGATATCTCAACTATTCGGGAAGCACATTTGTGACTGG
CGAGCATCATTACGACCAGCAAAGTGGACCGGAATACAACTCATGGTGAG
CTTGACTTCACCACTACCTCGCGTGTATCCAAGCTCGCGCAGTTCTTCCC
AAGCCTGCCGCTGGACGGCCTGGCAAGGTCGTGAAtggctccttctcctg
gtcGTGTCATCGCTTGGCTCGGTTGCCCTAGTGTATCAATTTGGTGGCCG
CGTCGATCAGCACTTGGCTGTTCGCCGATTCGCCTTGCGTCTCCAATCCC
GTACCACGAGCGCCGCTGAGTATTGTCCTGAATACACCCCTGTTTTGGAT
CAGGCGCTCCATACCTACAAGAATCCGAAGAGATCATTTTCAAGAAAAGC
TCAGTCAAGAGTCGACGCTTTCATAGCTGGAACAGGGGGGATGCGAGTGG
CGGTCTCAGCGGATAACGGCCGAGTTAGCATGTTACCAGTAAAGCGTGAC
CGGCAGCGCATCGCAGACTTGCTGGCAAACATCCAGCTTGCTCAGAGACT
GTTCGGAAATTTTCCGTTCGACTTTGAATTTTGGTACAATTCGGGGGACA
TGCCAGCATTGCCGCGGGCTGTCTTTCCATCCGATGAGGGGGTCCTGCTG
CCCCCTCTAGGATACACTACCACGGACGGGCACTACGATGTGTCCATTCC
CTACCTCAGACAAGCCGTCTGGagcgaagaaagagagatgcATACCCTCC
ACTCCCTGGTGCAGAGCCATCCCTGGTCGCAAAAGCTGCCCAAGGGGGTC
TGGCGGGGAAGCACGACGGGAGCGGCCGCCGTCGACGCCTCCAACTGCTG
GACATTGCCGCGCGCGGTTCTGGTGAATGTCTCCCTTGAGAACCCCGGCT
TGCTCGACGCTCGATTCACCGCCTGCAAGCACTGCTCCCGAGACACCGCC
GTGGCGTATGAAACGGCCGGGTATGGCTACGCGCCCTTCTTAAGCGTGCA
AGAGCAGTTTCGCTACCAGGTCTTGATCGACGTGGACGGTAACTCATGGT
CCAGCCGCTTTGCGACACTCTTAAGCATCAACTCGGCCGTGGTTAAGCAG
GAGACGCAATACGTGGAGTTCTTCAGACCGCTGCTCCAGCCTTACAAGCA
CTACTTGCCTGTGAAGGACGACCTTTCGGATCTGGAAGCACTCTTGAAAG
AGCGATTGGACGCATCGAAGAATTCAACAGCGCACATGGAATTGCAAGAG
ATGGGGGCGGAAAGCACGAGGCTGTACATGCGTTCACTGGTGCCGTCGAA
ACAGCTGTGCTACCTCCATCGGGTCCTTGAGGTATACAGTCGGGTCTTCG
AACGGGGGTCAGGAATATAGTTGCGTGGCAGGTGTAGGGGGAGACTTGAC
TATTTTCCCCGCATTTTCGTCACAAATCTTACACTAGCGTACATGCAGGA
TGTCAAATAAATAGCTGAACTGTAGCCGTAAGAAAATCTTCGATGTGGTT
CATAATACATTCATAGACAGCTACAacagaaagaaaaatgagatATGCCa
acgtgaagaaaaaagcatGATGGAGCTAAATTTCCCTCTGATTGAATGGT
TACCAGCACACAAGCATG

Coding sequence (CDS) from alignment at CM002461.1:335266..337133+

>rna3406 ID=rna3406|Name=rna3406|organism=Nannochloropsis gaditana|type=CDS|length=1278bp|location=Sequence derived from alignment at CM002461.1:335266..337133+ (Nannochloropsis gaditana)
ATGGTGAGCTTGACTTCACCACTACCTCGCGTGTATCCAAGCTCGCGCAG
TTCTTCCCAAGCCTGCCGCTGGACGGCCTGGCAAGGTCGTGAAtggctcc
ttctcctggtcGTGTCATCGCTTGGCTCGGTTGCCCTAGTGTATCAATTT
GGTGGCCGCGTCGATCAGCACTTGGCTGTTCGCCGATTCGCCTTGCGTCT
CCAATCCCGTACCACGAGCGCCGCTGAGTATTGTCCTGAATACACCCCTG
TTTTGGATCAGGCGCTCCATACCTACAAGAATCCGAAGAGATCATTTTCA
AGAAAAGCTCAGTCAAGAGTCGACGCTTTCATAGCTGGAACAGGGGGGAT
GCGAGTGGCGGTCTCAGCGGATAACGGCCGAGTTAGCATGTTACCAGTAA
AGCGTGACCGGCAGCGCATCGCAGACTTGCTGGCAAACATCCAGCTTGCT
CAGAGACTGTTCGGAAATTTTCCGTTCGACTTTGAATTTTGGTACAATTC
GGGGGACATGCCAGCATTGCCGCGGGCTGTCTTTCCATCCGATGAGGGGG
TCCTGCTGCCCCCTCTAGGATACACTACCACGGACGGGCACTACGATGTG
TCCATTCCCTACCTCAGACAAGCCGTCTGGagcgaagaaagagagatgcA
TACCCTCCACTCCCTGGTGCAGAGCCATCCCTGGTCGCAAAAGCTGCCCA
AGGGGGTCTGGCGGGGAAGCACGACGGGAGCGGCCGCCGTCGACGCCTCC
AACTGCTGGACATTGCCGCGCGCGGTTCTGGTGAATGTCTCCCTTGAGAA
CCCCGGCTTGCTCGACGCTCGATTCACCGCCTGCAAGCACTGCTCCCGAG
ACACCGCCGTGGCGTATGAAACGGCCGGGTATGGCTACGCGCCCTTCTTA
AGCGTGCAAGAGCAGTTTCGCTACCAGGTCTTGATCGACGTGGACGGTAA
CTCATGGTCCAGCCGCTTTGCGACACTCTTAAGCATCAACTCGGCCGTGG
TTAAGCAGGAGACGCAATACGTGGAGTTCTTCAGACCGCTGCTCCAGCCT
TACAAGCACTACTTGCCTGTGAAGGACGACCTTTCGGATCTGGAAGCACT
CTTGAAAGAGCGATTGGACGCATCGAAGAATTCAACAGCGCACATGGAAT
TGCAAGAGATGGGGGCGGAAAGCACGAGGCTGTACATGCGTTCACTGGTG
CCGTCGAAACAGCTGTGCTACCTCCATCGGGTCCTTGAGGTATACAGTCG
GGTCTTCGAACGGGGGTCAGGAATATAG

Synonyms

Publications