EWM27280.1, cds3397 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM27280.1 vs. NCBI_GenBank
Match: gi|585109462|gb|EWM27280.1| (Lipopolysaccharide-modifying protein [Nannochloropsis gaditana]) HSP 1 Score: 878.241 bits (2268), Expect = 0.000e+0 Identity = 425/425 (100.00%), Postives = 425/425 (100.00%), Query Frame = 0
Query: 1 MVSLTSPLPRVYPSSRSSSQACRWTAWQGREWLLLLVVSSLGSVALVYQFGGRVDQHLAVRRFALRLQSRTTSAAEYCPEYTPVLDQALHTYKNPKRSFSRKAQSRVDAFIAGTGGMRVAVSADNGRVSMLPVKRDRQRIADLLANIQLAQRLFGNFPFDFEFWYNSGDMPALPRAVFPSDEGVLLPPLGYTTTDGHYDVSIPYLRQAVWSEEREMHTLHSLVQSHPWSQKLPKGVWRGSTTGAAAVDASNCWTLPRAVLVNVSLENPGLLDARFTACKHCSRDTAVAYETAGYGYAPFLSVQEQFRYQVLIDVDGNSWSSRFATLLSINSAVVKQETQYVEFFRPLLQPYKHYLPVKDDLSDLEALLKERLDASKNSTAHMELQEMGAESTRLYMRSLVPSKQLCYLHRVLEVYSRVFERGSGI 425
MVSLTSPLPRVYPSSRSSSQACRWTAWQGREWLLLLVVSSLGSVALVYQFGGRVDQHLAVRRFALRLQSRTTSAAEYCPEYTPVLDQALHTYKNPKRSFSRKAQSRVDAFIAGTGGMRVAVSADNGRVSMLPVKRDRQRIADLLANIQLAQRLFGNFPFDFEFWYNSGDMPALPRAVFPSDEGVLLPPLGYTTTDGHYDVSIPYLRQAVWSEEREMHTLHSLVQSHPWSQKLPKGVWRGSTTGAAAVDASNCWTLPRAVLVNVSLENPGLLDARFTACKHCSRDTAVAYETAGYGYAPFLSVQEQFRYQVLIDVDGNSWSSRFATLLSINSAVVKQETQYVEFFRPLLQPYKHYLPVKDDLSDLEALLKERLDASKNSTAHMELQEMGAESTRLYMRSLVPSKQLCYLHRVLEVYSRVFERGSGI
Sbjct: 1 MVSLTSPLPRVYPSSRSSSQACRWTAWQGREWLLLLVVSSLGSVALVYQFGGRVDQHLAVRRFALRLQSRTTSAAEYCPEYTPVLDQALHTYKNPKRSFSRKAQSRVDAFIAGTGGMRVAVSADNGRVSMLPVKRDRQRIADLLANIQLAQRLFGNFPFDFEFWYNSGDMPALPRAVFPSDEGVLLPPLGYTTTDGHYDVSIPYLRQAVWSEEREMHTLHSLVQSHPWSQKLPKGVWRGSTTGAAAVDASNCWTLPRAVLVNVSLENPGLLDARFTACKHCSRDTAVAYETAGYGYAPFLSVQEQFRYQVLIDVDGNSWSSRFATLLSINSAVVKQETQYVEFFRPLLQPYKHYLPVKDDLSDLEALLKERLDASKNSTAHMELQEMGAESTRLYMRSLVPSKQLCYLHRVLEVYSRVFERGSGI 425
BLAST of EWM27280.1 vs. NCBI_GenBank
Match: gi|971510278|dbj|GAQ87920.1| (protein glucosyltransferase [Klebsormidium nitens]) HSP 1 Score: 125.946 bits (315), Expect = 3.172e-28 Identity = 101/381 (26.51%), Postives = 167/381 (43.83%), Query Frame = 0
Query: 63 FALRLQSRTTSAAEYCPEYTPVLDQALHTYKNPKRSFSRKAQSRVDAFIAGTGGMRVAVSADNGRVSMLPVKRDR----QRIADLLANIQLAQRLFGNFPFDFEFWYNSGDMPALPRAVFPSDEGVLLPPL-GYTTTDGHYDVSIPYLRQAVWSEEREMHTLH-----------------SLVQSHPWSQKLPKGVWRGSTTGAAAVDASNCWTLPRAVLVNVSLENPGLLDARFTACK--HCSRDTAVAYETAGYGYAPFLSVQEQFRYQVLIDVDGNSWSSRFATLLSINSAVVKQETQYVEFFRPLLQPYKHYLPVKDDLSDLEALLKERLDASKNSTAHMELQEMGAESTRLYMRSLVPSKQLCYLHRVLEVYSRVF 419
+ + L+ + SAA+ +D+ L Y R+F+ + ++ MRV DN + ++D R+ ++ QR+ G P F+ N D P + + F + LPPL Y +T +YD L W R + T H V +HPW ++P+ +WRGS TG + SN PR +L +S +NP +L+ + C+ C+ + + L ++ R++ L+DVDGNS+SSRFA LLS + V KQ+T Y EF QP +HY+ V+ D S+L +K+ + + + + M A S L + YL ++E Y+++
Sbjct: 91 YPILLERKEMSAAQRKKMIQDAVDKQLLPYIMENRTFTIQQVDKLKK--RNNFAMRVIKHGDNLTIVQTEQEKDNWAYWYRMDQTAIALKAMQRI-GMLPHRFDLVVNLNDEPNMSQRDF----TLGLPPLFSYCSTPRNYD-----LLWVGWQYWRCLSTRHWEDFMAEPDCPKPFNITEAVHNHPWKTRIPQALWRGSPTGRRHTE-SNWRVKPRPLLAMISQDNPDVLNCTLSKCQEGQCTEEAVEQMQQVVGFQDKMLKTKDYLRHKYLVDVDGNSYSSRFALLLSTGALVFKQDTHYEEFLDLFFQPDRHYVRVEKDFSNLVGEVKKAIREDRRA------ELMAARSVALMQYIVEKDIVFEYLQTLIEAYAKLL 452
BLAST of EWM27280.1 vs. NCBI_GenBank
Match: gi|971512255|dbj|GAQ85939.1| (protein glucosyltransferase [Klebsormidium nitens]) HSP 1 Score: 121.324 bits (303), Expect = 9.195e-27 Identity = 93/316 (29.43%), Postives = 153/316 (48.42%), Query Frame = 0
Query: 114 TGGMRVAVSADNGRVSMLPVKRDRQ-----RIADLLANIQLAQRLFGNFPFDFEFWYNSGDMPALPRAVFPSDEGVLLPPLGYTTT-DGHYDVSIPYLRQAVWSEEREMHTLHSLVQSHPWSQKLPKGVWRGSTTGAAAVDASNCWTLPRAVLVNVSLENPGLLDARFTACK--HCSRDTAVAYETAGYGYA--PFLSVQEQFRYQVLIDVDGNSWSSRFATLLSINSAVVKQETQYVEFFRPLLQPYKHYLPVKDDLSDLEALLKERLDASKNSTAHMELQEMGAESTRLYMRSLVPSKQLCYLHRVLEVYSRVF 419
G +R V NGR LPV+ R R++ + ++ FG P + + + + D P + + V L PL + T G +DV IP +S+ +M LH +V W ++ + +WRGS TG + N +T PR+ LVNVSL NP ++DA+F C C+ D + A + ++++ +Y+ +I +DGN+WSSRF LL + K + Y+E+F L PY+HY+PV D SDL ++ +D + E++ + ++ RS+ Y +LE YS++
Sbjct: 113 VGAVRFVVR--NGRPKALPVRFPRSIHYQSRVSFWQSLLERLAWRFG-LPENLDAVFWTEDQPQIAAGI----NTVSLAPLFVSATLPGFFDVPIP--TTEYYSKLAKM-DLHEVVAKKRWEERQARAIWRGSPTGGWFA-SYNWFTYPRSKLVNVSLHNPEIIDAKFLPCAWGQCADDVWPLIQEAFPEHTDDTHFTMEDYVQYKFVISIDGNAWSSRFVDLLRTGCVIFKVASPYLEYFDSFLIPYRHYIPVATDSSDLLDKVRWAIDHDE------EMKAISIAVQEVFYRSIGNGVWEEYASLMLEEYSKLL 411
BLAST of EWM27280.1 vs. NCBI_GenBank
Match: gi|971510864|dbj|GAQ87332.1| (protein glucosyltransferase [Klebsormidium nitens]) HSP 1 Score: 117.087 bits (292), Expect = 3.750e-25 Identity = 90/265 (33.96%), Postives = 125/265 (47.17%), Query Frame = 0
Query: 169 DMPALPRAVFPSDEGVLLPPLGYTTTDGHYDVSIPY------LRQAVWSEEREMHTLHSLVQSHPWSQKLPKGVWRGSTTGAAAVDASNCWTLPRAVLVNVSLENPGLLDARFTACK--HCSRDTAVAYETAGYGY-APFLSVQEQFRYQVLIDVDGNSWSSRFATLLSINSAVVKQETQYVEFFRPLLQPYKHYLPVKDDLSDLEALLKERLDASKNSTAHMELQEMGAESTRL---YMRSLVPSKQLCYLHRVLEVYSRVFER 421
D P L RA F D+ P YTTT ++ +P ++Q + SE L + W + K +WRGS TG N W PR LVN + N +LDA+F C CS T A + AG S E Y+ LID+DGN+WSSR+A +L+ + K + Y E+F L PYK Y+P+ +D SD L E+L + + AH E EM R+ Y + + L Y+H +L YS + ER
Sbjct: 194 DRPKLFRAPFHMDKA---PLFVYTTTSDFAEIPLPTTEYYGKIKQLLPSE---------LEDAQRWDGRTAKAIWRGSPTGGEYTK-ENFWRYPRTHLVNHTRANSDILDAKFLPCAPGQCSEQTFQAMKEAGLPTDTKQFSFGEFTSYKYLIDIDGNAWSSRYAHVLACGAVFFKANSPYTEYFYDFLTPYKDYIPIAEDASD----LPEKL---RYAVAHDE--EMRLVHQRVLEKYAKLIGNGNWLKYVHYLLSEYSSLLER 436
BLAST of EWM27280.1 vs. NCBI_GenBank
Match: gi|971506697|dbj|GAQ91515.1| (protein glucosyltransferase [Klebsormidium nitens]) HSP 1 Score: 112.464 bits (280), Expect = 1.310e-23 Identity = 73/236 (30.93%), Postives = 109/236 (46.19%), Query Frame = 0
Query: 187 PPLGYTTTDGHYDVSIPYLRQAVWSEEREMHTLHSLVQSHPWSQKL-PKGVWRGSTTGAAAVDASNCWTLPRAVLVNVSLENPGLLDARFTACK--HCSRDTAVAYETAGYGYAPFLSVQEQFRYQVLIDVDGNSWSSRFATLLSINSAVVKQETQYVEFFRPLLQPYKHYLPVKDDLSDLEALLKERLDASKNSTAHMELQEMGAESTRLYMRSLVPSKQLCYLHRVLEVYSRVF 419
P Y +T GHYD+ IP + ++ ++ V++ W +++ +WRGS TG N R LVN + P L+DAR C C + A E + +++ LID+DGN+WSSRF LLS + K ET YVE+F L PYKHY+PV D SDL ++ +D E++ M + R + + Y+ +L YSR+
Sbjct: 191 PIFTYASTLGHYDIPIPTMEYYGKLKDVDLEA----VKAQKWEERIGAPAIWRGSPTGGLYT-RENYQQKQRYQLVNTTKHYPDLVDARMMPCAPGQCHDEAWAAMERELPTGGSQFKYPDYIKHKFLIDIDGNAWSSRFILLLSTGCVIFKIETPYVEYFNEFLVPYKHYIPVASDSSDLPEKIQYAVDHDD------EMRAMSENLVSSFNRFIANGRWELYVKTLLTEYSRLL 415
BLAST of EWM27280.1 vs. NCBI_GenBank
Match: gi|1084492929|gb|OGN56326.1| (hypothetical protein A2796_02765 [Chlamydiae bacterium RIFCSPHIGHO2_01_FULL_44_39] >gi|1084504697|gb|OGN67065.1| hypothetical protein A2978_00470 [Chlamydiae bacterium RIFCSPLOWO2_01_FULL_44_52]) HSP 1 Score: 109.768 bits (273), Expect = 4.578e-23 Identity = 71/193 (36.79%), Postives = 109/193 (56.48%), Query Frame = 0
Query: 228 WSQKLPKGVWRGSTTGAAAVDASNCW-TLPRAVLVNVSLENPGLLDARFTACKHCSRDTAVAYETAGYGYAPFLSVQEQFRYQVLIDVDGNSWS-SRFATLLSINSAVVKQETQYVEFFRPLLQPYKHYLPVKDDLSDLEALLKERLDASKNSTAHMELQEMGAESTRLYMRSLVPSKQLCYLHRVLEVYSRV 418
WSQK+ K WRG+TTG + S W L RA LV +SL +P +DARF C R+ + G +P +S + +Y+ L+DVDGNS S RF LL NS V+KQ T V+++ L+PY+H++P+++DLSD L E++ ++ T E +E+ +T +L L YL+ +++ YS +
Sbjct: 171 WSQKVAKCFWRGATTGGYSTLTS--WQELARAKLVLLSLNHPTEIDARFHNVVQCDREVPSFLKAKGM-VSPSVSRPDHLKYKYLVDVDGNSCSYERFFWLLLSNSVVLKQITPNVQWYYSALKPYQHFIPIQEDLSD----LLEKIQWAR--THDREAEEIARHATAFVEENLSAEDILVYLYHLIKKYSNL 354
BLAST of EWM27280.1 vs. NCBI_GenBank
Match: gi|1084497242|gb|OGN60282.1| (hypothetical protein A3D96_05575 [Chlamydiae bacterium RIFCSPHIGHO2_12_FULL_44_59] >gi|1084509135|gb|OGN71358.1| hypothetical protein A3F79_03070 [Chlamydiae bacterium RIFCSPLOWO2_12_FULL_45_20]) HSP 1 Score: 109.768 bits (273), Expect = 6.052e-23 Identity = 71/193 (36.79%), Postives = 109/193 (56.48%), Query Frame = 0
Query: 228 WSQKLPKGVWRGSTTGAAAVDASNCW-TLPRAVLVNVSLENPGLLDARFTACKHCSRDTAVAYETAGYGYAPFLSVQEQFRYQVLIDVDGNSWS-SRFATLLSINSAVVKQETQYVEFFRPLLQPYKHYLPVKDDLSDLEALLKERLDASKNSTAHMELQEMGAESTRLYMRSLVPSKQLCYLHRVLEVYSRV 418
WSQK+ K WRG+TTG + S W L RA LV +SL +P +DARF C R+ + G +P +S + +Y+ L+DVDGNS S RF LL NS V+KQ T V+++ L+PY+H++P+++DLSD L E++ ++ T E +E+ +T +L L YL+ +++ YS +
Sbjct: 191 WSQKVAKCFWRGATTGGYSTLTS--WQELARAKLVLLSLNHPTEIDARFHNVVQCDREVPSFLKAKGM-VSPSVSRPDHLKYKYLVDVDGNSCSYERFFWLLLSNSVVLKQITPNVQWYYSALKPYQHFIPIQEDLSD----LLEKIQWAR--THDREAEEIARHATAFVEENLSAEDILVYLYHLIKKYSNL 374
BLAST of EWM27280.1 vs. NCBI_GenBank
Match: gi|1084505311|gb|OGN67655.1| (hypothetical protein A3I67_04405 [Chlamydiae bacterium RIFCSPLOWO2_02_FULL_45_22]) HSP 1 Score: 109.383 bits (272), Expect = 9.766e-23 Identity = 71/193 (36.79%), Postives = 109/193 (56.48%), Query Frame = 0
Query: 228 WSQKLPKGVWRGSTTGAAAVDASNCW-TLPRAVLVNVSLENPGLLDARFTACKHCSRDTAVAYETAGYGYAPFLSVQEQFRYQVLIDVDGNSWS-SRFATLLSINSAVVKQETQYVEFFRPLLQPYKHYLPVKDDLSDLEALLKERLDASKNSTAHMELQEMGAESTRLYMRSLVPSKQLCYLHRVLEVYSRV 418
WSQK+ K WRG+TTG + S W L RA LV +SL +P +DARF C R+ + G +P +S + +Y+ L+DVDGNS S RF LL NS V+KQ T V+++ L+PY+H++P+++DLSD L E++ ++ T E +E+ +T +L L YL+ +++ YS +
Sbjct: 224 WSQKVAKCFWRGATTGGYSTLTS--WQELARAKLVLLSLNHPTEIDARFHNVVQCDREVPSFLKAKGM-VSPSVSRPDHLKYKYLVDVDGNSCSYERFFWLLLSNSVVLKQITPNVQWYYSALKPYQHFIPIQEDLSD----LLEKIQWAR--THDREAEEIARHATAFVEENLSAEDILVYLYHLIKKYSNL 407
BLAST of EWM27280.1 vs. NCBI_GenBank
Match: gi|551643396|ref|XP_005824492.1| (hypothetical protein GUITHDRAFT_116321 [Guillardia theta CCMP2712] >gi|428168569|gb|EKX37512.1| hypothetical protein GUITHDRAFT_116321 [Guillardia theta CCMP2712]) HSP 1 Score: 102.834 bits (255), Expect = 9.596e-22 Identity = 70/201 (34.83%), Postives = 105/201 (52.24%), Query Frame = 0
Query: 221 SLVQSHPWSQKLPKGVWRGSTTGAAAVDASNCW-TLPRAVLVNVSLENPGLLDARFTACKHCSRD-TAVAYETAGYGYAPFLSVQEQFRYQVLIDVDGNSWSSRFATLLSINSAVVKQETQYVEFFRPLLQPYKHYLPVKDDLSDLEALLKERLDASKNSTAHMELQEMGAESTRLYMRSLVPSKQLCYLHRVLEVYSRVF 419
+L S P+ K K +RGSTTG V N W PR+ +V SL++P L+DARFT D A E G+ +S EQ++Y++++ DGNS R L+ N V+KQE+ EF+ LQPY H++P K D+S+L +++ L KN + L+ + ST + L CYL +L Y++V+
Sbjct: 20 ALDNSIPFESKKNKAFFRGSTTGG--VYTLNNWRDFPRSKIVQASLDHPELIDARFTNIVQTDSDQVARVMEKEGFLSRGRVSHSEQWQYKLVVVPDGNSVPDRLLDFLASNVVVLKQESTSEEFWYRDLQPYHHFIPFKRDVSNLIHVIRSSL---KNESL---LRHVAQASTLYVLEHLNSDSMKCYLVHLLHAYAQVY 212
BLAST of EWM27280.1 vs. NCBI_GenBank
Match: gi|551644076|ref|XP_005824830.1| (hypothetical protein GUITHDRAFT_115990 [Guillardia theta CCMP2712] >gi|428168911|gb|EKX37850.1| hypothetical protein GUITHDRAFT_115990 [Guillardia theta CCMP2712]) HSP 1 Score: 102.834 bits (255), Expect = 1.589e-20 Identity = 67/195 (34.36%), Postives = 104/195 (53.33%), Query Frame = 0
Query: 227 PWSQKLPKGVWRGSTTGAAAVDASNCW-TLPRAVLVNVSLENPGLLDARFT-ACKHCSRDTAVAYETAGYGYAPFLSVQEQFRYQVLIDVDGNSWSSRFATLLSINSAVVKQETQYVEFFRPLLQPYKHYLPVKDDLSDLEALLKERLDASKNSTAHMELQEMGAESTRLYMRSLVPSKQLCYLHRVLEVYSRVF 419
P +K+ K +RG+TTG V N W R+ +V SL++P LLDARFT ++ S E GY + EQ++Y++++ DGNS R L+ N V+KQE++ EF+ L+PY+HY+P K D+SDL ++++ L KN T + + ST + +L CYL +L Y+ V+
Sbjct: 188 PLERKINKAFFRGTTTGG--VYTLNNWKNFTRSKIVKASLDHPDLLDARFTRVVQYDSEKLVKVMENEGYLTETHVEHSEQWKYRMIVVPDGNSVPDRLLDFLASNVVVLKQESENEEFWYQDLKPYEHYIPFKRDVSDLVEVIRKTL---KNETL---MTHVSDSSTHYVLANLNSDCIKCYLVHLLYEYADVY 374 The following BLAST results are available for this feature:
BLAST of EWM27280.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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