EWM27280.1, cds3397 (CDS) Nannochloropsis gaditana

Overview
NameEWM27280.1
Unique Namecds3397
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002461.1:335608..336885 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM27280.1
ProductLipopolysaccharide-modifying protein
Orig transcript idgnl|cribi|Naga_100080g25.2844.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002461.1supercontigCM002461.1:335608..336885 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: INTERPRO
TermDefinition
IPR006598LipoPS_modifying
Homology
BLAST of EWM27280.1 vs. NCBI_GenBank
Match: gi|585109462|gb|EWM27280.1| (Lipopolysaccharide-modifying protein [Nannochloropsis gaditana])

HSP 1 Score: 878.241 bits (2268), Expect = 0.000e+0
Identity = 425/425 (100.00%), Postives = 425/425 (100.00%), Query Frame = 0
Query:    1 MVSLTSPLPRVYPSSRSSSQACRWTAWQGREWLLLLVVSSLGSVALVYQFGGRVDQHLAVRRFALRLQSRTTSAAEYCPEYTPVLDQALHTYKNPKRSFSRKAQSRVDAFIAGTGGMRVAVSADNGRVSMLPVKRDRQRIADLLANIQLAQRLFGNFPFDFEFWYNSGDMPALPRAVFPSDEGVLLPPLGYTTTDGHYDVSIPYLRQAVWSEEREMHTLHSLVQSHPWSQKLPKGVWRGSTTGAAAVDASNCWTLPRAVLVNVSLENPGLLDARFTACKHCSRDTAVAYETAGYGYAPFLSVQEQFRYQVLIDVDGNSWSSRFATLLSINSAVVKQETQYVEFFRPLLQPYKHYLPVKDDLSDLEALLKERLDASKNSTAHMELQEMGAESTRLYMRSLVPSKQLCYLHRVLEVYSRVFERGSGI 425
            MVSLTSPLPRVYPSSRSSSQACRWTAWQGREWLLLLVVSSLGSVALVYQFGGRVDQHLAVRRFALRLQSRTTSAAEYCPEYTPVLDQALHTYKNPKRSFSRKAQSRVDAFIAGTGGMRVAVSADNGRVSMLPVKRDRQRIADLLANIQLAQRLFGNFPFDFEFWYNSGDMPALPRAVFPSDEGVLLPPLGYTTTDGHYDVSIPYLRQAVWSEEREMHTLHSLVQSHPWSQKLPKGVWRGSTTGAAAVDASNCWTLPRAVLVNVSLENPGLLDARFTACKHCSRDTAVAYETAGYGYAPFLSVQEQFRYQVLIDVDGNSWSSRFATLLSINSAVVKQETQYVEFFRPLLQPYKHYLPVKDDLSDLEALLKERLDASKNSTAHMELQEMGAESTRLYMRSLVPSKQLCYLHRVLEVYSRVFERGSGI
Sbjct:    1 MVSLTSPLPRVYPSSRSSSQACRWTAWQGREWLLLLVVSSLGSVALVYQFGGRVDQHLAVRRFALRLQSRTTSAAEYCPEYTPVLDQALHTYKNPKRSFSRKAQSRVDAFIAGTGGMRVAVSADNGRVSMLPVKRDRQRIADLLANIQLAQRLFGNFPFDFEFWYNSGDMPALPRAVFPSDEGVLLPPLGYTTTDGHYDVSIPYLRQAVWSEEREMHTLHSLVQSHPWSQKLPKGVWRGSTTGAAAVDASNCWTLPRAVLVNVSLENPGLLDARFTACKHCSRDTAVAYETAGYGYAPFLSVQEQFRYQVLIDVDGNSWSSRFATLLSINSAVVKQETQYVEFFRPLLQPYKHYLPVKDDLSDLEALLKERLDASKNSTAHMELQEMGAESTRLYMRSLVPSKQLCYLHRVLEVYSRVFERGSGI 425          
BLAST of EWM27280.1 vs. NCBI_GenBank
Match: gi|971510278|dbj|GAQ87920.1| (protein glucosyltransferase [Klebsormidium nitens])

HSP 1 Score: 125.946 bits (315), Expect = 3.172e-28
Identity = 101/381 (26.51%), Postives = 167/381 (43.83%), Query Frame = 0
Query:   63 FALRLQSRTTSAAEYCPEYTPVLDQALHTYKNPKRSFSRKAQSRVDAFIAGTGGMRVAVSADNGRVSMLPVKRDR----QRIADLLANIQLAQRLFGNFPFDFEFWYNSGDMPALPRAVFPSDEGVLLPPL-GYTTTDGHYDVSIPYLRQAVWSEEREMHTLH-----------------SLVQSHPWSQKLPKGVWRGSTTGAAAVDASNCWTLPRAVLVNVSLENPGLLDARFTACK--HCSRDTAVAYETAGYGYAPFLSVQEQFRYQVLIDVDGNSWSSRFATLLSINSAVVKQETQYVEFFRPLLQPYKHYLPVKDDLSDLEALLKERLDASKNSTAHMELQEMGAESTRLYMRSLVPSKQLCYLHRVLEVYSRVF 419
            + + L+ +  SAA+        +D+ L  Y    R+F+ +   ++         MRV    DN  +     ++D      R+      ++  QR+ G  P  F+   N  D P + +  F     + LPPL  Y +T  +YD     L    W   R + T H                   V +HPW  ++P+ +WRGS TG    + SN    PR +L  +S +NP +L+   + C+   C+ +     +         L  ++  R++ L+DVDGNS+SSRFA LLS  + V KQ+T Y EF     QP +HY+ V+ D S+L   +K+ +   + +      + M A S  L    +       YL  ++E Y+++ 
Sbjct:   91 YPILLERKEMSAAQRKKMIQDAVDKQLLPYIMENRTFTIQQVDKLKK--RNNFAMRVIKHGDNLTIVQTEQEKDNWAYWYRMDQTAIALKAMQRI-GMLPHRFDLVVNLNDEPNMSQRDF----TLGLPPLFSYCSTPRNYD-----LLWVGWQYWRCLSTRHWEDFMAEPDCPKPFNITEAVHNHPWKTRIPQALWRGSPTGRRHTE-SNWRVKPRPLLAMISQDNPDVLNCTLSKCQEGQCTEEAVEQMQQVVGFQDKMLKTKDYLRHKYLVDVDGNSYSSRFALLLSTGALVFKQDTHYEEFLDLFFQPDRHYVRVEKDFSNLVGEVKKAIREDRRA------ELMAARSVALMQYIVEKDIVFEYLQTLIEAYAKLL 452          
BLAST of EWM27280.1 vs. NCBI_GenBank
Match: gi|971512255|dbj|GAQ85939.1| (protein glucosyltransferase [Klebsormidium nitens])

HSP 1 Score: 121.324 bits (303), Expect = 9.195e-27
Identity = 93/316 (29.43%), Postives = 153/316 (48.42%), Query Frame = 0
Query:  114 TGGMRVAVSADNGRVSMLPVKRDRQ-----RIADLLANIQLAQRLFGNFPFDFEFWYNSGDMPALPRAVFPSDEGVLLPPLGYTTT-DGHYDVSIPYLRQAVWSEEREMHTLHSLVQSHPWSQKLPKGVWRGSTTGAAAVDASNCWTLPRAVLVNVSLENPGLLDARFTACK--HCSRDTAVAYETAGYGYA--PFLSVQEQFRYQVLIDVDGNSWSSRFATLLSINSAVVKQETQYVEFFRPLLQPYKHYLPVKDDLSDLEALLKERLDASKNSTAHMELQEMGAESTRLYMRSLVPSKQLCYLHRVLEVYSRVF 419
             G +R  V   NGR   LPV+  R      R++   + ++     FG  P + +  + + D P +   +      V L PL  + T  G +DV IP      +S+  +M  LH +V    W ++  + +WRGS TG     + N +T PR+ LVNVSL NP ++DA+F  C    C+ D     + A   +      ++++  +Y+ +I +DGN+WSSRF  LL     + K  + Y+E+F   L PY+HY+PV  D SDL   ++  +D  +      E++ +      ++ RS+       Y   +LE YS++ 
Sbjct:  113 VGAVRFVVR--NGRPKALPVRFPRSIHYQSRVSFWQSLLERLAWRFG-LPENLDAVFWTEDQPQIAAGI----NTVSLAPLFVSATLPGFFDVPIP--TTEYYSKLAKM-DLHEVVAKKRWEERQARAIWRGSPTGGWFA-SYNWFTYPRSKLVNVSLHNPEIIDAKFLPCAWGQCADDVWPLIQEAFPEHTDDTHFTMEDYVQYKFVISIDGNAWSSRFVDLLRTGCVIFKVASPYLEYFDSFLIPYRHYIPVATDSSDLLDKVRWAIDHDE------EMKAISIAVQEVFYRSIGNGVWEEYASLMLEEYSKLL 411          
BLAST of EWM27280.1 vs. NCBI_GenBank
Match: gi|971510864|dbj|GAQ87332.1| (protein glucosyltransferase [Klebsormidium nitens])

HSP 1 Score: 117.087 bits (292), Expect = 3.750e-25
Identity = 90/265 (33.96%), Postives = 125/265 (47.17%), Query Frame = 0
Query:  169 DMPALPRAVFPSDEGVLLPPLGYTTTDGHYDVSIPY------LRQAVWSEEREMHTLHSLVQSHPWSQKLPKGVWRGSTTGAAAVDASNCWTLPRAVLVNVSLENPGLLDARFTACK--HCSRDTAVAYETAGYGY-APFLSVQEQFRYQVLIDVDGNSWSSRFATLLSINSAVVKQETQYVEFFRPLLQPYKHYLPVKDDLSDLEALLKERLDASKNSTAHMELQEMGAESTRL---YMRSLVPSKQLCYLHRVLEVYSRVFER 421
            D P L RA F  D+    P   YTTT    ++ +P       ++Q + SE         L  +  W  +  K +WRGS TG       N W  PR  LVN +  N  +LDA+F  C    CS  T  A + AG        S  E   Y+ LID+DGN+WSSR+A +L+  +   K  + Y E+F   L PYK Y+P+ +D SD    L E+L   + + AH E  EM     R+   Y + +     L Y+H +L  YS + ER
Sbjct:  194 DRPKLFRAPFHMDKA---PLFVYTTTSDFAEIPLPTTEYYGKIKQLLPSE---------LEDAQRWDGRTAKAIWRGSPTGGEYTK-ENFWRYPRTHLVNHTRANSDILDAKFLPCAPGQCSEQTFQAMKEAGLPTDTKQFSFGEFTSYKYLIDIDGNAWSSRYAHVLACGAVFFKANSPYTEYFYDFLTPYKDYIPIAEDASD----LPEKL---RYAVAHDE--EMRLVHQRVLEKYAKLIGNGNWLKYVHYLLSEYSSLLER 436          
BLAST of EWM27280.1 vs. NCBI_GenBank
Match: gi|971506697|dbj|GAQ91515.1| (protein glucosyltransferase [Klebsormidium nitens])

HSP 1 Score: 112.464 bits (280), Expect = 1.310e-23
Identity = 73/236 (30.93%), Postives = 109/236 (46.19%), Query Frame = 0
Query:  187 PPLGYTTTDGHYDVSIPYLRQAVWSEEREMHTLHSLVQSHPWSQKL-PKGVWRGSTTGAAAVDASNCWTLPRAVLVNVSLENPGLLDARFTACK--HCSRDTAVAYETAGYGYAPFLSVQEQFRYQVLIDVDGNSWSSRFATLLSINSAVVKQETQYVEFFRPLLQPYKHYLPVKDDLSDLEALLKERLDASKNSTAHMELQEMGAESTRLYMRSLVPSKQLCYLHRVLEVYSRVF 419
            P   Y +T GHYD+ IP +      ++ ++      V++  W +++    +WRGS TG       N     R  LVN +   P L+DAR   C    C  +   A E             +  +++ LID+DGN+WSSRF  LLS    + K ET YVE+F   L PYKHY+PV  D SDL   ++  +D         E++ M       + R +   +   Y+  +L  YSR+ 
Sbjct:  191 PIFTYASTLGHYDIPIPTMEYYGKLKDVDLEA----VKAQKWEERIGAPAIWRGSPTGGLYT-RENYQQKQRYQLVNTTKHYPDLVDARMMPCAPGQCHDEAWAAMERELPTGGSQFKYPDYIKHKFLIDIDGNAWSSRFILLLSTGCVIFKIETPYVEYFNEFLVPYKHYIPVASDSSDLPEKIQYAVDHDD------EMRAMSENLVSSFNRFIANGRWELYVKTLLTEYSRLL 415          
BLAST of EWM27280.1 vs. NCBI_GenBank
Match: gi|1084492929|gb|OGN56326.1| (hypothetical protein A2796_02765 [Chlamydiae bacterium RIFCSPHIGHO2_01_FULL_44_39] >gi|1084504697|gb|OGN67065.1| hypothetical protein A2978_00470 [Chlamydiae bacterium RIFCSPLOWO2_01_FULL_44_52])

HSP 1 Score: 109.768 bits (273), Expect = 4.578e-23
Identity = 71/193 (36.79%), Postives = 109/193 (56.48%), Query Frame = 0
Query:  228 WSQKLPKGVWRGSTTGAAAVDASNCW-TLPRAVLVNVSLENPGLLDARFTACKHCSRDTAVAYETAGYGYAPFLSVQEQFRYQVLIDVDGNSWS-SRFATLLSINSAVVKQETQYVEFFRPLLQPYKHYLPVKDDLSDLEALLKERLDASKNSTAHMELQEMGAESTRLYMRSLVPSKQLCYLHRVLEVYSRV 418
            WSQK+ K  WRG+TTG  +   S  W  L RA LV +SL +P  +DARF     C R+     +  G   +P +S  +  +Y+ L+DVDGNS S  RF  LL  NS V+KQ T  V+++   L+PY+H++P+++DLSD    L E++  ++  T   E +E+   +T     +L     L YL+ +++ YS +
Sbjct:  171 WSQKVAKCFWRGATTGGYSTLTS--WQELARAKLVLLSLNHPTEIDARFHNVVQCDREVPSFLKAKGM-VSPSVSRPDHLKYKYLVDVDGNSCSYERFFWLLLSNSVVLKQITPNVQWYYSALKPYQHFIPIQEDLSD----LLEKIQWAR--THDREAEEIARHATAFVEENLSAEDILVYLYHLIKKYSNL 354          
BLAST of EWM27280.1 vs. NCBI_GenBank
Match: gi|1084497242|gb|OGN60282.1| (hypothetical protein A3D96_05575 [Chlamydiae bacterium RIFCSPHIGHO2_12_FULL_44_59] >gi|1084509135|gb|OGN71358.1| hypothetical protein A3F79_03070 [Chlamydiae bacterium RIFCSPLOWO2_12_FULL_45_20])

HSP 1 Score: 109.768 bits (273), Expect = 6.052e-23
Identity = 71/193 (36.79%), Postives = 109/193 (56.48%), Query Frame = 0
Query:  228 WSQKLPKGVWRGSTTGAAAVDASNCW-TLPRAVLVNVSLENPGLLDARFTACKHCSRDTAVAYETAGYGYAPFLSVQEQFRYQVLIDVDGNSWS-SRFATLLSINSAVVKQETQYVEFFRPLLQPYKHYLPVKDDLSDLEALLKERLDASKNSTAHMELQEMGAESTRLYMRSLVPSKQLCYLHRVLEVYSRV 418
            WSQK+ K  WRG+TTG  +   S  W  L RA LV +SL +P  +DARF     C R+     +  G   +P +S  +  +Y+ L+DVDGNS S  RF  LL  NS V+KQ T  V+++   L+PY+H++P+++DLSD    L E++  ++  T   E +E+   +T     +L     L YL+ +++ YS +
Sbjct:  191 WSQKVAKCFWRGATTGGYSTLTS--WQELARAKLVLLSLNHPTEIDARFHNVVQCDREVPSFLKAKGM-VSPSVSRPDHLKYKYLVDVDGNSCSYERFFWLLLSNSVVLKQITPNVQWYYSALKPYQHFIPIQEDLSD----LLEKIQWAR--THDREAEEIARHATAFVEENLSAEDILVYLYHLIKKYSNL 374          
BLAST of EWM27280.1 vs. NCBI_GenBank
Match: gi|1084505311|gb|OGN67655.1| (hypothetical protein A3I67_04405 [Chlamydiae bacterium RIFCSPLOWO2_02_FULL_45_22])

HSP 1 Score: 109.383 bits (272), Expect = 9.766e-23
Identity = 71/193 (36.79%), Postives = 109/193 (56.48%), Query Frame = 0
Query:  228 WSQKLPKGVWRGSTTGAAAVDASNCW-TLPRAVLVNVSLENPGLLDARFTACKHCSRDTAVAYETAGYGYAPFLSVQEQFRYQVLIDVDGNSWS-SRFATLLSINSAVVKQETQYVEFFRPLLQPYKHYLPVKDDLSDLEALLKERLDASKNSTAHMELQEMGAESTRLYMRSLVPSKQLCYLHRVLEVYSRV 418
            WSQK+ K  WRG+TTG  +   S  W  L RA LV +SL +P  +DARF     C R+     +  G   +P +S  +  +Y+ L+DVDGNS S  RF  LL  NS V+KQ T  V+++   L+PY+H++P+++DLSD    L E++  ++  T   E +E+   +T     +L     L YL+ +++ YS +
Sbjct:  224 WSQKVAKCFWRGATTGGYSTLTS--WQELARAKLVLLSLNHPTEIDARFHNVVQCDREVPSFLKAKGM-VSPSVSRPDHLKYKYLVDVDGNSCSYERFFWLLLSNSVVLKQITPNVQWYYSALKPYQHFIPIQEDLSD----LLEKIQWAR--THDREAEEIARHATAFVEENLSAEDILVYLYHLIKKYSNL 407          
BLAST of EWM27280.1 vs. NCBI_GenBank
Match: gi|551643396|ref|XP_005824492.1| (hypothetical protein GUITHDRAFT_116321 [Guillardia theta CCMP2712] >gi|428168569|gb|EKX37512.1| hypothetical protein GUITHDRAFT_116321 [Guillardia theta CCMP2712])

HSP 1 Score: 102.834 bits (255), Expect = 9.596e-22
Identity = 70/201 (34.83%), Postives = 105/201 (52.24%), Query Frame = 0
Query:  221 SLVQSHPWSQKLPKGVWRGSTTGAAAVDASNCW-TLPRAVLVNVSLENPGLLDARFTACKHCSRD-TAVAYETAGYGYAPFLSVQEQFRYQVLIDVDGNSWSSRFATLLSINSAVVKQETQYVEFFRPLLQPYKHYLPVKDDLSDLEALLKERLDASKNSTAHMELQEMGAESTRLYMRSLVPSKQLCYLHRVLEVYSRVF 419
            +L  S P+  K  K  +RGSTTG   V   N W   PR+ +V  SL++P L+DARFT       D  A   E  G+     +S  EQ++Y++++  DGNS   R    L+ N  V+KQE+   EF+   LQPY H++P K D+S+L  +++  L   KN +    L+ +   ST   +  L      CYL  +L  Y++V+
Sbjct:   20 ALDNSIPFESKKNKAFFRGSTTGG--VYTLNNWRDFPRSKIVQASLDHPELIDARFTNIVQTDSDQVARVMEKEGFLSRGRVSHSEQWQYKLVVVPDGNSVPDRLLDFLASNVVVLKQESTSEEFWYRDLQPYHHFIPFKRDVSNLIHVIRSSL---KNESL---LRHVAQASTLYVLEHLNSDSMKCYLVHLLHAYAQVY 212          
BLAST of EWM27280.1 vs. NCBI_GenBank
Match: gi|551644076|ref|XP_005824830.1| (hypothetical protein GUITHDRAFT_115990 [Guillardia theta CCMP2712] >gi|428168911|gb|EKX37850.1| hypothetical protein GUITHDRAFT_115990 [Guillardia theta CCMP2712])

HSP 1 Score: 102.834 bits (255), Expect = 1.589e-20
Identity = 67/195 (34.36%), Postives = 104/195 (53.33%), Query Frame = 0
Query:  227 PWSQKLPKGVWRGSTTGAAAVDASNCW-TLPRAVLVNVSLENPGLLDARFT-ACKHCSRDTAVAYETAGYGYAPFLSVQEQFRYQVLIDVDGNSWSSRFATLLSINSAVVKQETQYVEFFRPLLQPYKHYLPVKDDLSDLEALLKERLDASKNSTAHMELQEMGAESTRLYMRSLVPSKQLCYLHRVLEVYSRVF 419
            P  +K+ K  +RG+TTG   V   N W    R+ +V  SL++P LLDARFT   ++ S       E  GY     +   EQ++Y++++  DGNS   R    L+ N  V+KQE++  EF+   L+PY+HY+P K D+SDL  ++++ L   KN T    +  +   ST   + +L      CYL  +L  Y+ V+
Sbjct:  188 PLERKINKAFFRGTTTGG--VYTLNNWKNFTRSKIVKASLDHPDLLDARFTRVVQYDSEKLVKVMENEGYLTETHVEHSEQWKYRMIVVPDGNSVPDRLLDFLASNVVVLKQESENEEFWYQDLKPYEHYIPFKRDVSDLVEVIRKTL---KNETL---MTHVSDSSTHYVLANLNSDCIKCYLVHLLYEYADVY 374          
The following BLAST results are available for this feature:
BLAST of EWM27280.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585109462|gb|EWM27280.1|0.000e+0100.00Lipopolysaccharide-modifying protein [Nannochlorop... [more]
gi|971510278|dbj|GAQ87920.1|3.172e-2826.51protein glucosyltransferase [Klebsormidium nitens][more]
gi|971512255|dbj|GAQ85939.1|9.195e-2729.43protein glucosyltransferase [Klebsormidium nitens][more]
gi|971510864|dbj|GAQ87332.1|3.750e-2533.96protein glucosyltransferase [Klebsormidium nitens][more]
gi|971506697|dbj|GAQ91515.1|1.310e-2330.93protein glucosyltransferase [Klebsormidium nitens][more]
gi|1084492929|gb|OGN56326.1|4.578e-2336.79hypothetical protein A2796_02765 [Chlamydiae bacte... [more]
gi|1084497242|gb|OGN60282.1|6.052e-2336.79hypothetical protein A3D96_05575 [Chlamydiae bacte... [more]
gi|1084505311|gb|OGN67655.1|9.766e-2336.79hypothetical protein A3I67_04405 [Chlamydiae bacte... [more]
gi|551643396|ref|XP_005824492.1|9.596e-2234.83hypothetical protein GUITHDRAFT_116321 [Guillardia... [more]
gi|551644076|ref|XP_005824830.1|1.589e-2034.36hypothetical protein GUITHDRAFT_115990 [Guillardia... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna3406rna3406Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications