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Properties
| Property Name | Value |
|---|
| Product | hypothetical protein |
| Orig transcript id | gnl|cribi|Naga_100080g23.2852.mrna |
| Orig protein id | gnl|cribi|Naga_100080g23.2852 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002461.1 | supercontig | CM002461.1:331397..333629 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna3404 ID=rna3404|Name=rna3404|organism=Nannochloropsis gaditana|type=mRNA|length=2164bp
TGAAGGGCGAGGATCCCCCCCAGGTGGCGGCGAAGGAAGGGAAGGAGATG
GTGCTTGAGCAGCGCGCCACCGCCTTGGGGGAGGTGGAGCCAGAGCAGGA
AATAGAGGAAGCACTCGTGGCCCCAGGGCACCCACTTGGTCGTCCACCGA
AGCCAGAGCTGGTCGAGTCCCTGCCCGGCCGCGACAATCGAAGCCGCGAC
GATCCAGTAGGACAAGCACTCCTTCAGGCGCTTTTCGTGCTTGTCGTCCC
CGTGGCTATGGGACGGGGCACCGGTGGGAGCAAGGCGGGCGGCAGTGGAG
GAGGCGCGAGACGTGGAGGGGAGGTCGGCGGGCTTGGCGTGCCTGGTGCC
CGTGGAGCCAGGAAAGGACGCCTTCCTGGGTGGAAAAGACTCCAGGGCAT
GAAATGAGGCGAACGCCGGCAGGTACAGGAGTAAGGCGTTAAAGACCAGC
TTCTGTGACAGCAGGCTGGTCACGGCGGGGAACAGCCACTGCACGGCCAG
ACAAGCAACCACGAACAGGACGTGCGGAAAGGCCTCGGCAGCCCGACGTG
AATATTGGTTGAGCTTGTTTCGGGCCTGATGGTAGCGACATTCGACCAAT
GCAACTTTACTGGCAATCGTTGCTCGGCATCTGTCCCATACTCGAAGACG
ACGGAGCAAACGGCGCAAGAGGAAGAAGCCGACCACGGCGCCAAGGAATA
ATCCGTATCCGAGCAAGACTTCTGGTTCCTGCTCTTTCAAATGATTTATA
AAAGCCTTGGCAAACCATTGCAAGTATGGGAGGGCAGATCTCCAAAGATG
AAGGAGCAGTCGCAACACGGGACGACCCAGTAGAACACCCAAACGGTACC
AGGCGTGGAGAGCCAGCCACGACGCACTTAAAGCCTCACGAAGGAGGATA
ATTGCCTTTTCCGAAAACGTCAGAAACAGATTTAAATTTGCGTTGAACCA
TGGCCATGTCCACCATTCATTTGAAGGAGGAGAGGAAATTGAGTGGCCGG
ATAGAGGAGTTGAGGAGTGGGGGGACGCGAATGCTTGAAGGTCGTTAGGA
TCAATCGAAGAGGGAAAGCTGGACGAAACCTGTGGGACCATCTTCACAGA
GCACACTTGATTTACTTCTCTTCCATCTGGCGAAGCCGCTCTGTCAATTG
GAGGGGAAAAAATAATCGAAATACCTCAATTGATATGTTTTAACCATGCA
ACCTTGGCATAATACACGAAGCGTAGGCCTGGAGCAAGTAAGCGAGTGAG
CGAGTGAGGGATGATGACGATGACAATGTGATGGAATATGACCCCAATTG
CGATGACGATGTGATTGAATAGTACCCCAACGGCGATGACGCTCTCCTCC
GCAGGTACTTGACCTTCGGCCATGTATTGAGACATGCATGGTTCTACCTG
GTCGCCCGCAGAGATGCTTTCAAAAGATTCTCGAAAGATCGGTTGATTAA
TTCGAACGGAGTCAGATGCCGTACCGCAAGCTGGGGCGGACGTCATCTCA
TCGATGGGCAATGCTTCGGAACATGGTCACATCTCTTGTAGAGCATGAGC
GCATTCGCACCACCACGGCTAAGGCGAAAGAACTACGGCGCGTAGCGGAC
CGCATGGTCACTTGGGCCAAGGACGGGTCTCTGCACGCTAGGCGACAGGC
CGCAATGGTCATACGGACCAAAGAACATTTGAAGAAACTCTTCGATGTCC
TTGGTCCTCGCTATCTCACACGGGCTGGTGGTTACACGCGAGTCCTGAAA
TTGCAGAGGTTTAGACCTGGGGACGCGGCGGAGATGAGCCTGATTGAATT
TGTCGGCCGTCCAGGAGAGTTGCGCCCGGCACGGCCACCCCAAACGGAAA
TCAAACTCTCCTCCTCTGGAAAAGCTATGGGCAAAGAAGACGTCATATCA
TCTGTACCCCCTAGATCTTCATCTGCGTCGCTTTCGTAAGTCGCGGGGCT
GTGAGAGACGGGAAGGGAGGACGACTACACCTGGAACGGGAAACCTCGAC
AGCCGAAAGTTAAATGTACACAAAAATTGGATAAAAGAAAAAAAGAGAAA
AGGCTAATTATGAGAAGTGGTAATGACACCTTGTCTTGACCAACCGTGGG
CGTAGGCTCTTAGACTCACTTACTCTGAAAACACTATGTAACTGGATTGA
ACGGATAGATTAGG back to topprotein sequence of rna3404 >rna3404-protein ID=rna3404-protein|Name=rna3404|organism=Nannochloropsis gaditana|type=polypeptide|length=553bp
MVPQVSSSFPSSIDPNDLQAFASPHSSTPLSGHSISSPPSNEWWTWPWFN
ANLNLFLTFSEKAIILLREALSASWLALHAWYRLGVLLGRPVLRLLLHLW
RSALPYLQWFAKAFINHLKEQEPEVLLGYGLFLGAVVGFFLLRRLLRRLR
VWDRCRATIASKVALVECRYHQARNKLNQYSRRAAEAFPHVLFVVACLAV
QWLFPAVTSLLSQKLVFNALLLYLPAFASFHALESFPPRKASFPGSTGTR
HAKPADLPSTSRASSTAARLAPTGAPSHSHGDDKHEKRLKECLSYWIVAA
SIVAAGQGLDQLWLRWTTKWVPWGHECFLYFLLWLHLPQGGGALLKHHLL
PFLRRHLGGILALQSRRDALVRRLLSLAVFAHLLSHPTADNLALHVDEFF
LVLPAAVLTFSPFAGWGLLFISLLFPVLASARALGEEGGKRPVGSKGTKK
ETGGRSQSPPTYSPRPWLQYWIVYALGHVIFQVLPIWPLVQMWVFLWVLL
PDLAGIPFLPIKLDGRRQVYGLLSRLHRLEMAGAGGKFQGQEQANPPGAE
DGE back to topmRNA from alignment at CM002461.1:331397..333629+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna3404 ID=rna3404|Name=rna3404|organism=Nannochloropsis gaditana|type=mRNA|length=2233bp|location=Sequence derived from alignment at CM002461.1:331397..333629+ (Nannochloropsis gaditana)
TGTATTATGCCAAGGTTGCATGGTTAAAACATATCAATTGAGGTATTTCG
AttattttttcccctccaatTGACAGAGCGGCTTCGCCAGATGGAAGAGA
AGTAAATCAAGTGTGCTCTGTGAAGATGGTCCCACAGGTTTCGTCCAGCT
TTCCCTCTTCGATTGATCCTAACGACCTTCAAGCATTCGCGTCCCCCCAC
TCCTCAACTCCTCTATCCGGCCACTCaatttcctctcctccttcaaatGA
ATGGTGGACATGGCCATGGTTCAACGCAAATTTAAATCTGTTTCTGACGT
TTTCGGAAAAGGCAATTATCCTCCTTCGTGAGGCTTTAAGTGCGTCGTGG
CTGGCTCTCCACGCCTGGTACCGTTTGGGTGTTCTACTGGGTCGTCCCGT
GTTGCGACTGCTCCTTCATCTTTGGAGATCTGCCCTCCCATACTTGCAAT
GGTTTGCCAAGGCTTTTATAAATCATTTGAAAGAGCAGGAACCAGAAGTC
TTGCTCGGATACGGATTATTCCTTGGCGCCGTGGtcggcttcttcctctt
gcgccGTTTGCTCCGTCGTCTTCGAGTATGGGACAGATGCCGAGCAACGA
TTGCCAGTAAAGTTGCATTGGTCGAATGTCGCTACCATCAGGCCCGAAAC
AAGCTCAACCAATATTCACGTCGGGCTGCCGAGGCCTTTCCGCACGTCCT
GTTCGTGGTTGCTTGTCTGGCCGTGCAGTGGCTGTTCCCCGCCGTGACCA
GCCTGCTGTCACAGAAGCTGGTCTTTAACGCCTTACTCCTGTACCTGCCG
GCGTTCGCCTCATTTCATGCCCTGGAGTCTTTTCCACCCAGGAAGGCGTC
CTTTCCTGGCTCCACGGGCACCAGGCACGCCAAGCccgccgacctcccct
ccacgtctcgcgcctcctccactgccgcccgccttgcTCCCACCGGTGCC
CCGTCCCATAGCCACGGGGACGACAAGCACGAAAAGCGCCTGAAGGAGTG
CTTGTCCTACTGGATCGTCGCGGCTTCGATTGTCGCGGCCGGGCAGGGAC
TCGACCAGCTCTGGCTTCGGTGGACGACCAAGTGGGTGCCCTGGGGCCAC
GAGTGCTTCCTCTATTTCCTGCTCtggctccacctcccccaaggCGGTGG
CGCGCTGCTCAAGcaccatctccttcccttccttcgccgccacCTGGGGG
GGATCCTCGCCCTTCAATCCAGGCGCGACGCGCTGGTCCGGCGCCTCCTG
AGTCTGGCTGTCttcgcccacctcctcagTCACCCAACAGCCGACAATCT
TGCGCTGCACGTGGACGAATTCTTCCTGGTGCTCCCGGCCGCCGtcctca
ccttctcccccttcgcaGGGTGGggtctcctcttcatctccttgctcttc
cctGTGCTGGCCTCCGCGCGCGCTTTGggtgaagagggtgggaagcgCCC
CGTGGGGTCGAAGGGCACCAAGAAGGAGACTGGAGGAAGGTCGCAGTCCC
CCCCCACGTATAGTCCTAGGCCTTGGCTCCAGTACTGGATCGTCTATGCG
CTCGGCCACGTGATCTTCCAAGTGCTCCCCATCTGGCCGCTCGTCCAGAT
GTGGGTATTCCTGTGGGTTCTCCTGCCCGACCTGGCTGgcattcctttcc
tccctatTAAACTCGACGGGCGGCGACAGGTGTATGGGTTGTTGAGTCGG
CTGCACCGACTGGAGATGGCGGGCGCCGGGGGAAAGTTCCAGGGACAAGA
GCAGGCAAACCCTCCGGGTGCCGAAGACGGGGAGTAGCAGCAACACGGGC
AACGGGACAGAAAGAGCGCTGGGTACCCGATAAAGTCGGACGTATCCGGT
GCGTCCGAGGTCCTTTCAAGCTCACCAGCCCTGCTCGCTCAAGGAGTGAa
agacggaggggcgggggaggaagaaacgagTGGAGACGGCAGGTTGGTag
ggaagacgagaaaggAGTAAGActgaggggaagagaggacaAACGTGTGT
TTGAAGACTGGAAGTAAGATTCGCAGGGTGAAAATTGTGCATATGtaaag
gcggtggagggtcagggaaagggcaaaggGAGCGAGGTGCTGATGGAGCT
TGAGCAATGCAATGGCTCTAGCAAGGTCCAAAGTACCTGAtaaaaagcaa
gaaaaagcacGGAGAATCATCTTTGCAATCGATGAAAGGCGTGATCGATG
TAagagcccctccttcccttcctccacgaacct back to topCoding sequence (CDS) from alignment at CM002461.1:331397..333629+ >rna3404 ID=rna3404|Name=rna3404|organism=Nannochloropsis gaditana|type=CDS|length=1662bp|location=Sequence derived from alignment at CM002461.1:331397..333629+ (Nannochloropsis gaditana)
ATGGTCCCACAGGTTTCGTCCAGCTTTCCCTCTTCGATTGATCCTAACGA
CCTTCAAGCATTCGCGTCCCCCCACTCCTCAACTCCTCTATCCGGCCACT
CaatttcctctcctccttcaaatGAATGGTGGACATGGCCATGGTTCAAC
GCAAATTTAAATCTGTTTCTGACGTTTTCGGAAAAGGCAATTATCCTCCT
TCGTGAGGCTTTAAGTGCGTCGTGGCTGGCTCTCCACGCCTGGTACCGTT
TGGGTGTTCTACTGGGTCGTCCCGTGTTGCGACTGCTCCTTCATCTTTGG
AGATCTGCCCTCCCATACTTGCAATGGTTTGCCAAGGCTTTTATAAATCA
TTTGAAAGAGCAGGAACCAGAAGTCTTGCTCGGATACGGATTATTCCTTG
GCGCCGTGGtcggcttcttcctcttgcgccGTTTGCTCCGTCGTCTTCGA
GTATGGGACAGATGCCGAGCAACGATTGCCAGTAAAGTTGCATTGGTCGA
ATGTCGCTACCATCAGGCCCGAAACAAGCTCAACCAATATTCACGTCGGG
CTGCCGAGGCCTTTCCGCACGTCCTGTTCGTGGTTGCTTGTCTGGCCGTG
CAGTGGCTGTTCCCCGCCGTGACCAGCCTGCTGTCACAGAAGCTGGTCTT
TAACGCCTTACTCCTGTACCTGCCGGCGTTCGCCTCATTTCATGCCCTGG
AGTCTTTTCCACCCAGGAAGGCGTCCTTTCCTGGCTCCACGGGCACCAGG
CACGCCAAGCccgccgacctcccctccacgtctcgcgcctcctccactgc
cgcccgccttgcTCCCACCGGTGCCCCGTCCCATAGCCACGGGGACGACA
AGCACGAAAAGCGCCTGAAGGAGTGCTTGTCCTACTGGATCGTCGCGGCT
TCGATTGTCGCGGCCGGGCAGGGACTCGACCAGCTCTGGCTTCGGTGGAC
GACCAAGTGGGTGCCCTGGGGCCACGAGTGCTTCCTCTATTTCCTGCTCt
ggctccacctcccccaaggCGGTGGCGCGCTGCTCAAGcaccatctcctt
cccttccttcgccgccacCTGGGGGGGATCCTCGCCCTTCAATCCAGGCG
CGACGCGCTGGTCCGGCGCCTCCTGAGTCTGGCTGTCttcgcccacctcc
tcagTCACCCAACAGCCGACAATCTTGCGCTGCACGTGGACGAATTCTTC
CTGGTGCTCCCGGCCGCCGtcctcaccttctcccccttcgcaGGGTGGgg
tctcctcttcatctccttgctcttccctGTGCTGGCCTCCGCGCGCGCTT
TGggtgaagagggtgggaagcgCCCCGTGGGGTCGAAGGGCACCAAGAAG
GAGACTGGAGGAAGGTCGCAGTCCCCCCCCACGTATAGTCCTAGGCCTTG
GCTCCAGTACTGGATCGTCTATGCGCTCGGCCACGTGATCTTCCAAGTGC
TCCCCATCTGGCCGCTCGTCCAGATGTGGGTATTCCTGTGGGTTCTCCTG
CCCGACCTGGCTGgcattcctttcctccctatTAAACTCGACGGGCGGCG
ACAGGTGTATGGGTTGTTGAGTCGGCTGCACCGACTGGAGATGGCGGGCG
CCGGGGGAAAGTTCCAGGGACAAGAGCAGGCAAACCCTCCGGGTGCCGAA
GACGGGGAGTAG back to top
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