rna3403, rna3403 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna3403
Unique Name	rna3403
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1890
Alignment location	CM002461.1:330056..332612 -

Link to JBrowse

Properties


Property Name	Value
Product	ribosomal protein l17
Orig transcript id	gnl\|cribi\|Naga_100080g22.2858.mrna
Orig protein id	gnl\|cribi\|Naga_100080g22.2858
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002461.1	supercontig	CM002461.1:330056..332612 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100080g22	gene3278	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna3403	rna3403-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM27294.1	cds3394	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002461.1:330056..332612-
coding sequence from alignment at CM002461.1:330056..332612-

mRNA sequence

>rna3403 ID=rna3403|Name=rna3403|organism=Nannochloropsis gaditana|type=mRNA|length=1890bp
TTCCCCGACTTTTCTGACCTTAATCTTCTCTTTCTAGCCCAAAAATTAGG
TGCTACAGTACCCGCCACCTGCTCTACTGTAGCTTGAATACTTTCAGCAC
CACGGGGTCGGCACGTGAGGGCATCAGAAAGGGATTCAAGCGGGCGCGGC
AGGAGGGAAACTCTCGCCTGTCAGGAGACCCGAGGTTGCCCATGGGAGTA
GAGGAAAGGATGTTTGCCACCAAAAAGACACTCTCCATGCTCTTCCTTTG
TACATTTTGTACCTTTCTGGCAGCCTTAGAGTACCATCGTGGTGGAGAGA
TGACCCTTGGTCTTCTTCAATGGGGCTCGGACCGCTTGTTACACTCGAAG
GGCGAAGAGAACGAGGAGGCAGCGAAGCGGGTGCTGATGATATCGGGCGG
TGCAGAGGGAGGGGAGGAAGAGGGAAGTGTGACCGGCGACACACAAGGCA
CGTGTGAGAACGCCATCATTTCCGCCCAGAAGAAACCCTCGCTATTCATC
AATGTGGGCAGGGTGGCCATAAGGGTCCTGCAGATGCCCTTCCAGACGGT
CCTCGCCCGCCTGCGGAAGCTTTTCTCCAAAGGAGAGCCCTCACCGGAAT
CGCCGTCCCGCCCTCCACACTCTAGGAGGGGGGTCTTCGACATGGAGAGC
TTGACAGACGGGCAGCTTCAGTGGGTTGAGGAAGTTTATCAACGTGAGGA
GACCGATGGGAGGAAGGGAGGGAGGGAGGGAGGAAAGGAGGGAGGGAGGG
AGCCGGAGTAGGACAGGAAAGATGTCGCTTTGCTCTGCCCGGAAATGGCA
TTTTGAGCGGACAGGTCTGCTCAAAGTCGCCTACCTACCTCCTTCCCCCC
TCGCTCTTTCTCTTCCTCCCTCCTACCTCCCTCCCTCTTCCCCTCCCTCA
GCCTTGATCCACATGCCCGGGATCCCGGAGCGTGGCCTGGCTGTGCGGAT
GGCCGTCGACCGAGAGTGCGTGGCCCGGTACTTCGTGGCCGGCCAGTGGA
AACCCTCCCTGCGGGGCAAGACCACGGTCGACCACGTGCTGCGCACCATC
CAGTGGCGGGAGCGGGAGCGGGTGGCCCATCTGGGGCCCGAAGACGTGTT
AGCCCAAGCCCGGGACGGCTACCTGTACGTGAATGGGACGGATCGGGTCG
GCCGCCCCTTGATTTACTTCTCGCCCGCCTTCCAGCCCAACAGGCGTCCC
GAGAAGGCCATCCAGTACTTGGTGTATACCCTGGAGCGGGCGCTGGATCT
GTCCCGCCAAGACGGCGTGGAGGCCTATTCCTTCATCATCGACTGCAGTG
GCTTCTCGCTCTCCAACATGCCGCCCATCAACATCATCAAACAAACCTTT
ACGCTTCTTCATCACCATTACCCCACGCGGGTGGGGTTCATCACGTTCTT
GCACACAGGCTCCGCTTTCCAATTTCTCTGGAAAATGCTCACGCCTTTGG
TCTCACCCATGACGCGCAACAAGATCCTCTTTGTTCCCACAGGGGAAGAG
GAAAAGATTCTTTTGGAGCGTGTGGATCCTCAAGAATTGGACAGGAAGTA
TGGTGGTGCGAAAGATTTCACGTTTGAGGCGCATGACTACTTTGGAGTTA
GCAAGGAGGAGGTTAGGAGGCTGACAAAGTGAAACGAGCGTTGAACGACG
GGCAACCAAGAAAGAACGTAGACAAGGCAGCATTTAAAATGTATGAGCTG
ATAAATTACAGCACGTCGATGGAAGCTCTTCAATCTGTAGTTATAATCAG
AAAGTGTTGGTATAAGTCGAGCGCCCACAGTGTCCGGGGCAATGAACAGG
AGGCCGACAAGGGCACTCATCACTGTACATGATCATTGCGCCTGCCCGCG
AGTAACGCTAATGAAAAGAAAAACCTTCACAGTCTGACCA

protein sequence of rna3403

>rna3403-protein ID=rna3403-protein|Name=rna3403|organism=Nannochloropsis gaditana|type=polypeptide|length=157bp
MPYRKLGRTSSHRWAMLRNMVTSLVEHERIRTTTAKAKELRRVADRMVTW
AKDGSLHARRQAAMVIRTKEHLKKLFDVLGPRYLTRAGGYTRVLKLQRFR
PGDAAEMSLIEFVGRPGELRPARPPQTEIKLSSSGKAMGKEDVISSVPPR
SSSASLS

mRNA from alignment at CM002461.1:330056..332612-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna3403 ID=rna3403|Name=rna3403|organism=Nannochloropsis gaditana|type=mRNA|length=2557bp|location=Sequence derived from alignment at CM002461.1:330056..332612- (Nannochloropsis gaditana)
TGAAGGGCGAGGATCCCCCCCAGGTGGCGGCGAAGGAAGGGAAGGAGATG
GTGCTTGAGCAGCGCGCCACCGCCTTGGGGGAGGTGGAGCCAGAGCAGGA
AATAGAGGAAGCACTCGTGGCCCCAGGGCACCCACTTGGTCGTCCACCGA
AGCCAGAGCTGGTCGAGTCCCTGCCCGGCCGCGACAATCGAAGCCGCGAC
GATCCAGTAGGACAAGCACTCCTTCAGGCGCTTTTCGTGCTTGTCGTCCC
CGTGGCTATGGGACGGGGCACCGGTGGGAGCAAGGCGGGCGGCAGTGGAG
GAGGCGCGAGACGTGGAGGGGAGGTCGGCGGGCTTGGCGTGCCTGGTGCC
CGTGGAGCCAGGAAAGGACGCCTTCCTGGGTGGAAAAGACTCCAGGGCAT
GAAATGAGGCGAACGCCGGCAGGTACAGGAGTAAGGCGTTAAAGACCAGC
TTCTGTGACAGCAGGCTGGTCACGGCGGGGAACAGCCACTGCACGGCCAG
ACAAGCAACCACGAACAGGACGTGCGGAAAGGCCTCGGCAGCCCGACGTG
AATATTGGTTGAGCTTGTTTCGGGCCTGATGGTAGCGACATTCGACCAAT
GCAACTTTACTGGCAATCGTTGCTCGGCATCTGTCCCATACTCGAAGACG
ACGGAGCAAACGGCGCAAGAGGAAGAAGCCGACCACGGCGCCAAGGAATA
ATCCGTATCCGAGCAAGACTTCTGGTTCCTGCTCTTTCAAATGATTTATA
AAAGCCTTGGCAAACCATTGCAAGTATGGGAGGGCAGATCTCCAAAGATG
AAGGAGCAGTCGCAACACGGGACGACCCAGTAGAACACCCAAACGGTACC
AGGCGTGGAGAGCCAGCCACGACGCACTTAAAGCCTCACGAAGGAGGATA
ATTGCCTTTTCCGAAAACGTCAGAAACAGATTTAAATTTGCGTTGAACCA
TGGCCATGTCCACCATTCATTTGAAGGAGGAGAGGAAATTGAGTGGCCGG
ATAGAGGAGTTGAGGAGTGGGGGGACGCGAATGCTTGAAGGTCGTTAGGA
TCAATCGAAGAGGGAAAGCTGGACGAAACCTGTGGGACCATCTTCACAGA
GCACACTTGATTTACTTCTCTTCCATCTGGCGAAGCCGCTCTGTCAATTG
GAGGGGAAAAAATAATCGAAATACCTCAATTGATATGTTTTAACCATGCA
ACCTTGGCATAATACACGAAGCGTAGGCCTGGAGCAAGTAAGCGAGTGAG
CGAGTGAGGGATGATGACGATGACAATGTGATGGAATATGACCCCAATTG
CGATGACGATGTGATTGAATAGTACCCCAACGGCGATGACGCTCTCCTCC
GCAGGTACTTGACCTTCGGCCATGTATTGAGACATGCATGGTTCTACCTG
GTCGCCCGCAGAGATGCTTTCAAAAGATTCTCGAAAGATCGGTTGATTAA
TTCGAACGGTATGCATGTGGGGTGAATAGAAGCACTTGTTCCGCCAGCGC
ACAGTCTTTCCCTGACGAGGTATCCTGTCCACAGATGAGGAAGTCCAAAA
CAACCTAATTTTATTCCGTCTTTGACCCATTTTCTTGAGACAGGAGTCAG
ATGCCGTACCGCAAGCTGGGGCGGACGTCATCTCATCGATGGGCAATGCT
TCGGAACATGGTCACATCTCTTGTAGAGCATGAGCGCATTCGCACCACCA
CGGCTAAGGTAATTATCATGACAAAAGTGTCAAGCTGCAAGAATGCTCGT
AACCTCAAACGGGACGTCTCTTTGAGCAATGAGAGAAGGCTTGCACAGTA
AACTTTGATGTTGCGTGTTCCACGCATGATGTAGACTAAGAAGACCTGCA
CTCAAAACTTTGCATGCGCCACGCTTTACACAGGCGAAAGAACTACGGCG
CGTAGCGGACCGCATGGTCACTTGGGCCAAGGTAAGCTTCGTCACGCCGG
TCGTAGTATATCGTTGACGTATCCTCAGACACCTGTCTCTCTGTTTTGTT
TCCCTCACTGGTAGGACGGGTCTCTGCACGCTAGGCGACAGGCCGCAATG
GTCATACGGACCAAAGAACATTTGAAGAAACTCTTCGATGTCCTTGGTCC
TCGCTATCTCACACGGGCTGGTGGTTACACGCGAGTCCTGAAATTGCAGA
GGTTTAGACCTGGGGACGCGGCGGAGATGAGCCTGATTGAATTTGTCGGC
CGTCCAGGAGAGTTGCGCCCGGCACGGCCACCCCAAACGGAAATCAAACT
CTCCTCCTCTGGAAAAGCTATGGGCAAAGAAGACGTCATATCATCTGTAC
CCCCTAGATCTTCATCTGCGTCGCTTTCGTAAGTCGCGGGGCTGTGAGAG
ACGGGAAGGGAGGACGACTACACCTGGAACGGGAAACCTCGACAGCCGAA
AGTTAAATGTACACAAAAATTGGATAAAAGAAAAAAAGAGAAAAGGCTAA
TTATGAGAAGTGGTAATGACACCTTGTCTTGACCAACCGTGGGCGTAGGC
TCTTAGACTCACTTACTCTGAAAACACTATGTAACTGGATTGAACGGATA
GATTAGG

Coding sequence (CDS) from alignment at CM002461.1:330056..332612-

>rna3403 ID=rna3403|Name=rna3403|organism=Nannochloropsis gaditana|type=CDS|length=1422bp|location=Sequence derived from alignment at CM002461.1:330056..332612- (Nannochloropsis gaditana)
GACGGGTCTCTGCACGCTAGGCGACAGGCCGCAATGGTCATACGGACCAA
AGAACATTTGAAGAAACTCTTCGATGTCCTTGGTCCTCGCTATCTCACAC
GGGCTGGTGGTTACACGCGAGTCCTGAAATTGCAGAGGTTTAGACCTGGG
GACGCGGCGGAGATGAGCCTGATTGAATTTGTCGGCCGTCCAGGAGAGTT
GCGCCCGGCACGGCCACCCCAAACGGAAATCAAACTCTCCTCCTCTGGAA
AAGCTATGGGCAAAGAAGACGTCATATCATCTGTACCCCCTAGATCTTCA
TCTGCGTCGCTTTCGTAAGCGAAAGAACTACGGCGCGTAGCGGACCGCAT
GGTCACTTGGGCCAAGATGCCGTACCGCAAGCTGGGGCGGACGTCATCTC
ATCGATGGGCAATGCTTCGGAACATGGTCACATCTCTTGTAGAGCATGAG
CGCATTCGCACCACCACGGCTAAGGACGGGTCTCTGCACGCTAGGCGACA
GGCCGCAATGGTCATACGGACCAAAGAACATTTGAAGAAACTCTTCGATG
TCCTTGGTCCTCGCTATCTCACACGGGCTGGTGGTTACACGCGAGTCCTG
AAATTGCAGAGGTTTAGACCTGGGGACGCGGCGGAGATGAGCCTGATTGA
ATTTGTCGGCCGTCCAGGAGAGTTGCGCCCGGCACGGCCACCCCAAACGG
AAATCAAACTCTCCTCCTCTGGAAAAGCTATGGGCAAAGAAGACGTCATA
TCATCTGTACCCCCTAGATCTTCATCTGCGTCGCTTTCGTAAGCGAAAGA
ACTACGGCGCGTAGCGGACCGCATGGTCACTTGGGCCAAGATGCCGTACC
GCAAGCTGGGGCGGACGTCATCTCATCGATGGGCAATGCTTCGGAACATG
GTCACATCTCTTGTAGAGCATGAGCGCATTCGCACCACCACGGCTAAGGA
CGGGTCTCTGCACGCTAGGCGACAGGCCGCAATGGTCATACGGACCAAAG
AACATTTGAAGAAACTCTTCGATGTCCTTGGTCCTCGCTATCTCACACGG
GCTGGTGGTTACACGCGAGTCCTGAAATTGCAGAGGTTTAGACCTGGGGA
CGCGGCGGAGATGAGCCTGATTGAATTTGTCGGCCGTCCAGGAGAGTTGC
GCCCGGCACGGCCACCCCAAACGGAAATCAAACTCTCCTCCTCTGGAAAA
GCTATGGGCAAAGAAGACGTCATATCATCTGTACCCCCTAGATCTTCATC
TGCGTCGCTTTCGTAAGCGAAAGAACTACGGCGCGTAGCGGACCGCATGG
TCACTTGGGCCAAGATGCCGTACCGCAAGCTGGGGCGGACGTCATCTCAT
CGATGGGCAATGCTTCGGAACATGGTCACATCTCTTGTAGAGCATGAGCG
CATTCGCACCACCACGGCTAAG

Synonyms

Publications