EWM27294.1, cds3394 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM27294.1 vs. NCBI_GenBank
Match: gi|585109476|gb|EWM27294.1| (ribosomal protein l17 [Nannochloropsis gaditana]) HSP 1 Score: 317.39 bits (812), Expect = 1.402e-109 Identity = 157/157 (100.00%), Postives = 157/157 (100.00%), Query Frame = 0
Query: 1 MPYRKLGRTSSHRWAMLRNMVTSLVEHERIRTTTAKAKELRRVADRMVTWAKDGSLHARRQAAMVIRTKEHLKKLFDVLGPRYLTRAGGYTRVLKLQRFRPGDAAEMSLIEFVGRPGELRPARPPQTEIKLSSSGKAMGKEDVISSVPPRSSSASLS 157
MPYRKLGRTSSHRWAMLRNMVTSLVEHERIRTTTAKAKELRRVADRMVTWAKDGSLHARRQAAMVIRTKEHLKKLFDVLGPRYLTRAGGYTRVLKLQRFRPGDAAEMSLIEFVGRPGELRPARPPQTEIKLSSSGKAMGKEDVISSVPPRSSSASLS
Sbjct: 1 MPYRKLGRTSSHRWAMLRNMVTSLVEHERIRTTTAKAKELRRVADRMVTWAKDGSLHARRQAAMVIRTKEHLKKLFDVLGPRYLTRAGGYTRVLKLQRFRPGDAAEMSLIEFVGRPGELRPARPPQTEIKLSSSGKAMGKEDVISSVPPRSSSASLS 157
BLAST of EWM27294.1 vs. NCBI_GenBank
Match: gi|953496455|emb|CEG42055.1| (ribosomal protein l17 [Plasmopara halstedii]) HSP 1 Score: 164.851 bits (416), Expect = 2.101e-49 Identity = 80/123 (65.04%), Postives = 97/123 (78.86%), Query Frame = 0
Query: 3 YRKLGRTSSHRWAMLRNMVTSLVEHERIRTTTAKAKELRRVADRMVTWAKDGSLHARRQAAMVIRTKEHLKKLFDVLGPRYLTRAGGYTRVLKLQRFRPGDAAEMSLIEFVGRPGELRPARPP 125
+RKL RTS+HR AMLR MVT L+EHERIRTT KAKELRRVAD++VT AK G AR++A +IRT E L KLFD++GPRY R GGYTR+LK FR GD AEM++IE++ RPGE+R A+PP
Sbjct: 7 FRKLSRTSAHRQAMLRTMVTQLIEHERIRTTLPKAKELRRVADKVVTLAKQGDDPARKRAQSIIRTPEALNKLFDIVGPRYALREGGYTRILKAD-FRKGDGAEMAVIEYIDRPGEMRKAKPP 128
BLAST of EWM27294.1 vs. NCBI_GenBank
Match: gi|1173937420|gb|OQR88228.1| (50S ribosomal protein L17 [Achlya hypogyna]) HSP 1 Score: 164.466 bits (415), Expect = 2.268e-49 Identity = 81/121 (66.94%), Postives = 95/121 (78.51%), Query Frame = 0
Query: 4 RKLGRTSSHRWAMLRNMVTSLVEHERIRTTTAKAKELRRVADRMVTWAKDGSLHARRQAAMVIRTKEHLKKLFDVLGPRYLTRAGGYTRVLKLQRFRPGDAAEMSLIEFVGRPGELRPARP 124
R+LGR HRWAMLRN VTSL+EHERIRTT KAKELRRVAD++VT AK + ARR A ++RTK L KLFDVLGPRY RAGGYTR++K FR GD AEM++IE++ RPGELR A+P
Sbjct: 8 RRLGRDGEHRWAMLRNQVTSLIEHERIRTTLPKAKELRRVADQVVTLAKQNDVCARRAAQGIVRTKTELDKLFDVLGPRYNDRAGGYTRIVKAD-FRYGDNAEMAVIEYIDRPGELRRAKP 127
BLAST of EWM27294.1 vs. NCBI_GenBank
Match: gi|669169845|ref|XP_008620271.1| (50S ribosomal protein L17 [Saprolegnia diclina VS20] >gi|813184212|ref|XP_012206278.1| 50S ribosomal protein L17 [Saprolegnia parasitica CBS 223.65] >gi|530728034|gb|EQC26276.1| 50S ribosomal protein L17 [Saprolegnia diclina VS20] >gi|641528783|gb|KDO22987.1| 50S ribosomal protein L17 [Saprolegnia parasitica CBS 223.65]) HSP 1 Score: 164.081 bits (414), Expect = 3.290e-49 Identity = 79/121 (65.29%), Postives = 95/121 (78.51%), Query Frame = 0
Query: 4 RKLGRTSSHRWAMLRNMVTSLVEHERIRTTTAKAKELRRVADRMVTWAKDGSLHARRQAAMVIRTKEHLKKLFDVLGPRYLTRAGGYTRVLKLQRFRPGDAAEMSLIEFVGRPGELRPARP 124
R+LGR HRWAMLRN VTSL+EHERIRTT KAKELRRVA+++VT AK + ARRQA ++RTK KLFD LGPRY+ RAGGYTR++K FR GD AEM++IE++ RPGELR A+P
Sbjct: 8 RRLGRDGEHRWAMLRNQVTSLIEHERIRTTLPKAKELRRVAEQVVTLAKQNDICARRQAQGIVRTKTEFDKLFDTLGPRYMDRAGGYTRIVKAD-FRYGDNAEMAVIEYIDRPGELRRAKP 127
BLAST of EWM27294.1 vs. NCBI_GenBank
Match: gi|301092240|ref|XP_002996979.1| (50S ribosomal protein L17, putative [Phytophthora infestans T30-4] >gi|262112207|gb|EEY70259.1| 50S ribosomal protein L17, putative [Phytophthora infestans T30-4]) HSP 1 Score: 164.081 bits (414), Expect = 3.710e-49 Identity = 81/123 (65.85%), Postives = 97/123 (78.86%), Query Frame = 0
Query: 3 YRKLGRTSSHRWAMLRNMVTSLVEHERIRTTTAKAKELRRVADRMVTWAKDGSLHARRQAAMVIRTKEHLKKLFDVLGPRYLTRAGGYTRVLKLQRFRPGDAAEMSLIEFVGRPGELRPARPP 125
+RKL RTS+HR AMLR MVT L+EHERIRTT KAKELRR+AD++VT AK G AR++A V+RT E L KLFDV+GPRY R GGYTR+LK FR GD AEM++IE+V RPGE+R A+PP
Sbjct: 7 FRKLNRTSAHREAMLRTMVTQLIEHERIRTTLPKAKELRRIADKVVTMAKQGDEPARKRAQSVLRTPEALTKLFDVVGPRYALREGGYTRILKAD-FRKGDGAEMAVIEYVDRPGEMRKAKPP 128
BLAST of EWM27294.1 vs. NCBI_GenBank
Match: gi|1173955451|gb|OQS02413.1| (50S ribosomal protein L17 [Thraustotheca clavata]) HSP 1 Score: 161.77 bits (408), Expect = 2.027e-48 Identity = 80/121 (66.12%), Postives = 93/121 (76.86%), Query Frame = 0
Query: 4 RKLGRTSSHRWAMLRNMVTSLVEHERIRTTTAKAKELRRVADRMVTWAKDGSLHARRQAAMVIRTKEHLKKLFDVLGPRYLTRAGGYTRVLKLQRFRPGDAAEMSLIEFVGRPGELRPARP 124
R+LGR HRWAMLRN VTSL+EHERIRTT KAKELRRVA+++VT AK ARR A ++RTK KLFD LGPRY+ RAGGYTR++K FR GD AEM+ IE+VGRPGELR A+P
Sbjct: 8 RRLGRDGEHRWAMLRNQVTSLIEHERIRTTLPKAKELRRVAEQVVTLAKQNDECARRAAQGIVRTKTEFTKLFDTLGPRYMDRAGGYTRIVKAD-FRYGDNAEMAFIEYVGRPGELRRAKP 127
BLAST of EWM27294.1 vs. NCBI_GenBank
Match: gi|675169469|ref|XP_008893619.1| (ribosomal protein L17 [Phytophthora parasitica INRA-310] >gi|566021827|gb|ETI44738.1| ribosomal protein L17 [Phytophthora parasitica P1569] >gi|567959144|gb|ETK84722.1| ribosomal protein L17 [Phytophthora parasitica] >gi|567987863|gb|ETL38155.1| ribosomal protein L17 [Phytophthora parasitica] >gi|568017084|gb|ETL91261.1| ribosomal protein L17 [Phytophthora parasitica] >gi|568047503|gb|ETM44582.1| ribosomal protein L17 [Phytophthora parasitica] >gi|568107272|gb|ETN21902.1| ribosomal protein L17 [Phytophthora parasitica INRA-310] >gi|570325417|gb|ETO73365.1| ribosomal protein L17 [Phytophthora parasitica P1976] >gi|570949291|gb|ETP14548.1| ribosomal protein L17 [Phytophthora parasitica CJ01A1] >gi|570982553|gb|ETP42628.1| ribosomal protein L17 [Phytophthora parasitica P10297] >gi|970631863|gb|KUF78326.1| 50S ribosomal protein L17 [Phytophthora nicotianae]) HSP 1 Score: 161.384 bits (407), Expect = 4.842e-48 Identity = 79/123 (64.23%), Postives = 97/123 (78.86%), Query Frame = 0
Query: 3 YRKLGRTSSHRWAMLRNMVTSLVEHERIRTTTAKAKELRRVADRMVTWAKDGSLHARRQAAMVIRTKEHLKKLFDVLGPRYLTRAGGYTRVLKLQRFRPGDAAEMSLIEFVGRPGELRPARPP 125
+RKL RTS+HR AMLR MVT L+EHERIRTT KAKELRRVA+++VT AK G AR++A ++RT E + KLFDV+GPRY R GGYTR+LK FR GD AEM++IE+V RPGE+R A+PP
Sbjct: 7 FRKLNRTSAHREAMLRTMVTQLIEHERIRTTLPKAKELRRVAEKVVTMAKQGDEPARKRAQSILRTPEAVTKLFDVVGPRYALREGGYTRILKAD-FRKGDGAEMAVIEYVDRPGEMRKAKPP 128
BLAST of EWM27294.1 vs. NCBI_GenBank
Match: gi|695434711|ref|XP_009531485.1| (Mitochondrial/chloroplast ribosomal protein L17 [Phytophthora sojae] >gi|348674237|gb|EGZ14056.1| Mitochondrial/chloroplast ribosomal protein L17 [Phytophthora sojae]) HSP 1 Score: 160.614 bits (405), Expect = 8.522e-48 Identity = 79/123 (64.23%), Postives = 97/123 (78.86%), Query Frame = 0
Query: 3 YRKLGRTSSHRWAMLRNMVTSLVEHERIRTTTAKAKELRRVADRMVTWAKDGSLHARRQAAMVIRTKEHLKKLFDVLGPRYLTRAGGYTRVLKLQRFRPGDAAEMSLIEFVGRPGELRPARPP 125
+RKL RTS+HR AMLR MVT L+EHERIRTT KAKELRRVA+++VT AK G AR++A ++RT E + KLFDV+GPRY R GGYTR+LK FR GD AEM++IE+V RPGE+R A+PP
Sbjct: 7 FRKLNRTSAHRQAMLRTMVTQLIEHERIRTTLPKAKELRRVAEQVVTMAKQGDEPARKRAQSILRTPEAVTKLFDVVGPRYALREGGYTRILKAD-FRKGDGAEMAVIEYVDRPGEMRKAKPP 128
BLAST of EWM27294.1 vs. NCBI_GenBank
Match: gi|971512756|dbj|GAQ85464.1| (mitochondrial ribosomal protein L17 precursor [Klebsormidium nitens]) HSP 1 Score: 159.458 bits (402), Expect = 5.061e-47 Identity = 80/126 (63.49%), Postives = 97/126 (76.98%), Query Frame = 0
Query: 3 YRKLGRTSSHRWAMLRNMVTSLVEHERIRTTTAKAKELRRVADRMVTWAKDGSLHARRQAAMVIRTKEHLKKLFDVLGPRYLTRAGGYTRVLKLQRFRPGDAAEMSLIEFVGRPGELRPARPPQTE 128
+RKLGRTSSHRWA+LR MV+ L+EHERI TT AKAKELRRVAD MVT K+G+LHARRQAA V+R EH+ KLF+ RY R GGYTRVL+ + + D+A M+ IEFV RPGEL A+PP+ +
Sbjct: 8 FRKLGRTSSHRWALLRTMVSQLIEHERIETTVAKAKELRRVADNMVTLGKEGTLHARRQAAAVVRGDEHVFKLFNDFAERYKEREGGYTRVLQTRDRK--DSAPMAYIEFVDRPGELVAAQPPRQQ 131
BLAST of EWM27294.1 vs. NCBI_GenBank
Match: gi|1210523644|dbj|GAX17604.1| (large subunit ribosomal protein L17 [Fistulifera solaris]) HSP 1 Score: 158.688 bits (400), Expect = 1.100e-46 Identity = 82/157 (52.23%), Postives = 113/157 (71.97%), Query Frame = 0
Query: 1 MPYRKLGRTSSHRWAMLRNMVTSLVEHERIRTTTAKAKELRRVADRMVTWAK-DGSLHARRQAAMVIRTKEHLKKLFDVLGPRYLTRAGGYTRVLKLQRFRPGDAAEMSLIEFVGRPGELRPARPP---QTEIK-LSSSGKAMGKEDVISSVPPRSS 152
+ +RKL RT +H+WAML+NMVTSLVEHERI TTT KAKE R +AD+++T AK + LHARR+ ++ T E KL +VLGPRY R GGYTR+LKL + R GD A+M+++E+V RPGE+R ARPP Q +I+ LS + +G ED +++ + +
Sbjct: 5 INFRKLSRTPAHKWAMLKNMVTSLVEHERIVTTTHKAKEARYLADKLITKAKGNDPLHARREINKIVTTAEAQTKLLNVLGPRYQFREGGYTRILKLAQRRKGDNADMAVLEYVDRPGEIRAARPPAVLQRQIESLSDVLQTLGIEDPTATLQQKDT 161 The following BLAST results are available for this feature:
BLAST of EWM27294.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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