EWM27294.1, cds3394 (CDS) Nannochloropsis gaditana

Overview
NameEWM27294.1
Unique Namecds3394
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002461.1:330905..331012 -
Alignment locationCM002461.1:330682..330729 -
Alignment locationCM002461.1:330281..330598 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM27294.1
Productribosomal protein l17
Orig transcript idgnl|cribi|Naga_100080g22.2858.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002461.1supercontigCM002461.1:330905..331012 -
CM002461.1supercontigCM002461.1:330682..330729 -
CM002461.1supercontigCM002461.1:330281..330598 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0005198structural molecule activity
GO:0003735structural constituent of ribosome
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
GO:0005622intracellular
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: INTERPRO
TermDefinition
IPR000456Ribosomal_L17
Homology
BLAST of EWM27294.1 vs. NCBI_GenBank
Match: gi|585109476|gb|EWM27294.1| (ribosomal protein l17 [Nannochloropsis gaditana])

HSP 1 Score: 317.39 bits (812), Expect = 1.402e-109
Identity = 157/157 (100.00%), Postives = 157/157 (100.00%), Query Frame = 0
Query:    1 MPYRKLGRTSSHRWAMLRNMVTSLVEHERIRTTTAKAKELRRVADRMVTWAKDGSLHARRQAAMVIRTKEHLKKLFDVLGPRYLTRAGGYTRVLKLQRFRPGDAAEMSLIEFVGRPGELRPARPPQTEIKLSSSGKAMGKEDVISSVPPRSSSASLS 157
            MPYRKLGRTSSHRWAMLRNMVTSLVEHERIRTTTAKAKELRRVADRMVTWAKDGSLHARRQAAMVIRTKEHLKKLFDVLGPRYLTRAGGYTRVLKLQRFRPGDAAEMSLIEFVGRPGELRPARPPQTEIKLSSSGKAMGKEDVISSVPPRSSSASLS
Sbjct:    1 MPYRKLGRTSSHRWAMLRNMVTSLVEHERIRTTTAKAKELRRVADRMVTWAKDGSLHARRQAAMVIRTKEHLKKLFDVLGPRYLTRAGGYTRVLKLQRFRPGDAAEMSLIEFVGRPGELRPARPPQTEIKLSSSGKAMGKEDVISSVPPRSSSASLS 157          
BLAST of EWM27294.1 vs. NCBI_GenBank
Match: gi|953496455|emb|CEG42055.1| (ribosomal protein l17 [Plasmopara halstedii])

HSP 1 Score: 164.851 bits (416), Expect = 2.101e-49
Identity = 80/123 (65.04%), Postives = 97/123 (78.86%), Query Frame = 0
Query:    3 YRKLGRTSSHRWAMLRNMVTSLVEHERIRTTTAKAKELRRVADRMVTWAKDGSLHARRQAAMVIRTKEHLKKLFDVLGPRYLTRAGGYTRVLKLQRFRPGDAAEMSLIEFVGRPGELRPARPP 125
            +RKL RTS+HR AMLR MVT L+EHERIRTT  KAKELRRVAD++VT AK G   AR++A  +IRT E L KLFD++GPRY  R GGYTR+LK   FR GD AEM++IE++ RPGE+R A+PP
Sbjct:    7 FRKLSRTSAHRQAMLRTMVTQLIEHERIRTTLPKAKELRRVADKVVTLAKQGDDPARKRAQSIIRTPEALNKLFDIVGPRYALREGGYTRILKAD-FRKGDGAEMAVIEYIDRPGEMRKAKPP 128          
BLAST of EWM27294.1 vs. NCBI_GenBank
Match: gi|1173937420|gb|OQR88228.1| (50S ribosomal protein L17 [Achlya hypogyna])

HSP 1 Score: 164.466 bits (415), Expect = 2.268e-49
Identity = 81/121 (66.94%), Postives = 95/121 (78.51%), Query Frame = 0
Query:    4 RKLGRTSSHRWAMLRNMVTSLVEHERIRTTTAKAKELRRVADRMVTWAKDGSLHARRQAAMVIRTKEHLKKLFDVLGPRYLTRAGGYTRVLKLQRFRPGDAAEMSLIEFVGRPGELRPARP 124
            R+LGR   HRWAMLRN VTSL+EHERIRTT  KAKELRRVAD++VT AK   + ARR A  ++RTK  L KLFDVLGPRY  RAGGYTR++K   FR GD AEM++IE++ RPGELR A+P
Sbjct:    8 RRLGRDGEHRWAMLRNQVTSLIEHERIRTTLPKAKELRRVADQVVTLAKQNDVCARRAAQGIVRTKTELDKLFDVLGPRYNDRAGGYTRIVKAD-FRYGDNAEMAVIEYIDRPGELRRAKP 127          
BLAST of EWM27294.1 vs. NCBI_GenBank
Match: gi|669169845|ref|XP_008620271.1| (50S ribosomal protein L17 [Saprolegnia diclina VS20] >gi|813184212|ref|XP_012206278.1| 50S ribosomal protein L17 [Saprolegnia parasitica CBS 223.65] >gi|530728034|gb|EQC26276.1| 50S ribosomal protein L17 [Saprolegnia diclina VS20] >gi|641528783|gb|KDO22987.1| 50S ribosomal protein L17 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 164.081 bits (414), Expect = 3.290e-49
Identity = 79/121 (65.29%), Postives = 95/121 (78.51%), Query Frame = 0
Query:    4 RKLGRTSSHRWAMLRNMVTSLVEHERIRTTTAKAKELRRVADRMVTWAKDGSLHARRQAAMVIRTKEHLKKLFDVLGPRYLTRAGGYTRVLKLQRFRPGDAAEMSLIEFVGRPGELRPARP 124
            R+LGR   HRWAMLRN VTSL+EHERIRTT  KAKELRRVA+++VT AK   + ARRQA  ++RTK    KLFD LGPRY+ RAGGYTR++K   FR GD AEM++IE++ RPGELR A+P
Sbjct:    8 RRLGRDGEHRWAMLRNQVTSLIEHERIRTTLPKAKELRRVAEQVVTLAKQNDICARRQAQGIVRTKTEFDKLFDTLGPRYMDRAGGYTRIVKAD-FRYGDNAEMAVIEYIDRPGELRRAKP 127          
BLAST of EWM27294.1 vs. NCBI_GenBank
Match: gi|301092240|ref|XP_002996979.1| (50S ribosomal protein L17, putative [Phytophthora infestans T30-4] >gi|262112207|gb|EEY70259.1| 50S ribosomal protein L17, putative [Phytophthora infestans T30-4])

HSP 1 Score: 164.081 bits (414), Expect = 3.710e-49
Identity = 81/123 (65.85%), Postives = 97/123 (78.86%), Query Frame = 0
Query:    3 YRKLGRTSSHRWAMLRNMVTSLVEHERIRTTTAKAKELRRVADRMVTWAKDGSLHARRQAAMVIRTKEHLKKLFDVLGPRYLTRAGGYTRVLKLQRFRPGDAAEMSLIEFVGRPGELRPARPP 125
            +RKL RTS+HR AMLR MVT L+EHERIRTT  KAKELRR+AD++VT AK G   AR++A  V+RT E L KLFDV+GPRY  R GGYTR+LK   FR GD AEM++IE+V RPGE+R A+PP
Sbjct:    7 FRKLNRTSAHREAMLRTMVTQLIEHERIRTTLPKAKELRRIADKVVTMAKQGDEPARKRAQSVLRTPEALTKLFDVVGPRYALREGGYTRILKAD-FRKGDGAEMAVIEYVDRPGEMRKAKPP 128          
BLAST of EWM27294.1 vs. NCBI_GenBank
Match: gi|1173955451|gb|OQS02413.1| (50S ribosomal protein L17 [Thraustotheca clavata])

HSP 1 Score: 161.77 bits (408), Expect = 2.027e-48
Identity = 80/121 (66.12%), Postives = 93/121 (76.86%), Query Frame = 0
Query:    4 RKLGRTSSHRWAMLRNMVTSLVEHERIRTTTAKAKELRRVADRMVTWAKDGSLHARRQAAMVIRTKEHLKKLFDVLGPRYLTRAGGYTRVLKLQRFRPGDAAEMSLIEFVGRPGELRPARP 124
            R+LGR   HRWAMLRN VTSL+EHERIRTT  KAKELRRVA+++VT AK     ARR A  ++RTK    KLFD LGPRY+ RAGGYTR++K   FR GD AEM+ IE+VGRPGELR A+P
Sbjct:    8 RRLGRDGEHRWAMLRNQVTSLIEHERIRTTLPKAKELRRVAEQVVTLAKQNDECARRAAQGIVRTKTEFTKLFDTLGPRYMDRAGGYTRIVKAD-FRYGDNAEMAFIEYVGRPGELRRAKP 127          
BLAST of EWM27294.1 vs. NCBI_GenBank
Match: gi|675169469|ref|XP_008893619.1| (ribosomal protein L17 [Phytophthora parasitica INRA-310] >gi|566021827|gb|ETI44738.1| ribosomal protein L17 [Phytophthora parasitica P1569] >gi|567959144|gb|ETK84722.1| ribosomal protein L17 [Phytophthora parasitica] >gi|567987863|gb|ETL38155.1| ribosomal protein L17 [Phytophthora parasitica] >gi|568017084|gb|ETL91261.1| ribosomal protein L17 [Phytophthora parasitica] >gi|568047503|gb|ETM44582.1| ribosomal protein L17 [Phytophthora parasitica] >gi|568107272|gb|ETN21902.1| ribosomal protein L17 [Phytophthora parasitica INRA-310] >gi|570325417|gb|ETO73365.1| ribosomal protein L17 [Phytophthora parasitica P1976] >gi|570949291|gb|ETP14548.1| ribosomal protein L17 [Phytophthora parasitica CJ01A1] >gi|570982553|gb|ETP42628.1| ribosomal protein L17 [Phytophthora parasitica P10297] >gi|970631863|gb|KUF78326.1| 50S ribosomal protein L17 [Phytophthora nicotianae])

HSP 1 Score: 161.384 bits (407), Expect = 4.842e-48
Identity = 79/123 (64.23%), Postives = 97/123 (78.86%), Query Frame = 0
Query:    3 YRKLGRTSSHRWAMLRNMVTSLVEHERIRTTTAKAKELRRVADRMVTWAKDGSLHARRQAAMVIRTKEHLKKLFDVLGPRYLTRAGGYTRVLKLQRFRPGDAAEMSLIEFVGRPGELRPARPP 125
            +RKL RTS+HR AMLR MVT L+EHERIRTT  KAKELRRVA+++VT AK G   AR++A  ++RT E + KLFDV+GPRY  R GGYTR+LK   FR GD AEM++IE+V RPGE+R A+PP
Sbjct:    7 FRKLNRTSAHREAMLRTMVTQLIEHERIRTTLPKAKELRRVAEKVVTMAKQGDEPARKRAQSILRTPEAVTKLFDVVGPRYALREGGYTRILKAD-FRKGDGAEMAVIEYVDRPGEMRKAKPP 128          
BLAST of EWM27294.1 vs. NCBI_GenBank
Match: gi|695434711|ref|XP_009531485.1| (Mitochondrial/chloroplast ribosomal protein L17 [Phytophthora sojae] >gi|348674237|gb|EGZ14056.1| Mitochondrial/chloroplast ribosomal protein L17 [Phytophthora sojae])

HSP 1 Score: 160.614 bits (405), Expect = 8.522e-48
Identity = 79/123 (64.23%), Postives = 97/123 (78.86%), Query Frame = 0
Query:    3 YRKLGRTSSHRWAMLRNMVTSLVEHERIRTTTAKAKELRRVADRMVTWAKDGSLHARRQAAMVIRTKEHLKKLFDVLGPRYLTRAGGYTRVLKLQRFRPGDAAEMSLIEFVGRPGELRPARPP 125
            +RKL RTS+HR AMLR MVT L+EHERIRTT  KAKELRRVA+++VT AK G   AR++A  ++RT E + KLFDV+GPRY  R GGYTR+LK   FR GD AEM++IE+V RPGE+R A+PP
Sbjct:    7 FRKLNRTSAHRQAMLRTMVTQLIEHERIRTTLPKAKELRRVAEQVVTMAKQGDEPARKRAQSILRTPEAVTKLFDVVGPRYALREGGYTRILKAD-FRKGDGAEMAVIEYVDRPGEMRKAKPP 128          
BLAST of EWM27294.1 vs. NCBI_GenBank
Match: gi|971512756|dbj|GAQ85464.1| (mitochondrial ribosomal protein L17 precursor [Klebsormidium nitens])

HSP 1 Score: 159.458 bits (402), Expect = 5.061e-47
Identity = 80/126 (63.49%), Postives = 97/126 (76.98%), Query Frame = 0
Query:    3 YRKLGRTSSHRWAMLRNMVTSLVEHERIRTTTAKAKELRRVADRMVTWAKDGSLHARRQAAMVIRTKEHLKKLFDVLGPRYLTRAGGYTRVLKLQRFRPGDAAEMSLIEFVGRPGELRPARPPQTE 128
            +RKLGRTSSHRWA+LR MV+ L+EHERI TT AKAKELRRVAD MVT  K+G+LHARRQAA V+R  EH+ KLF+    RY  R GGYTRVL+ +  +  D+A M+ IEFV RPGEL  A+PP+ +
Sbjct:    8 FRKLGRTSSHRWALLRTMVSQLIEHERIETTVAKAKELRRVADNMVTLGKEGTLHARRQAAAVVRGDEHVFKLFNDFAERYKEREGGYTRVLQTRDRK--DSAPMAYIEFVDRPGELVAAQPPRQQ 131          
BLAST of EWM27294.1 vs. NCBI_GenBank
Match: gi|1210523644|dbj|GAX17604.1| (large subunit ribosomal protein L17 [Fistulifera solaris])

HSP 1 Score: 158.688 bits (400), Expect = 1.100e-46
Identity = 82/157 (52.23%), Postives = 113/157 (71.97%), Query Frame = 0
Query:    1 MPYRKLGRTSSHRWAMLRNMVTSLVEHERIRTTTAKAKELRRVADRMVTWAK-DGSLHARRQAAMVIRTKEHLKKLFDVLGPRYLTRAGGYTRVLKLQRFRPGDAAEMSLIEFVGRPGELRPARPP---QTEIK-LSSSGKAMGKEDVISSVPPRSS 152
            + +RKL RT +H+WAML+NMVTSLVEHERI TTT KAKE R +AD+++T AK +  LHARR+   ++ T E   KL +VLGPRY  R GGYTR+LKL + R GD A+M+++E+V RPGE+R ARPP   Q +I+ LS   + +G ED  +++  + +
Sbjct:    5 INFRKLSRTPAHKWAMLKNMVTSLVEHERIVTTTHKAKEARYLADKLITKAKGNDPLHARREINKIVTTAEAQTKLLNVLGPRYQFREGGYTRILKLAQRRKGDNADMAVLEYVDRPGEIRAARPPAVLQRQIESLSDVLQTLGIEDPTATLQQKDT 161          
The following BLAST results are available for this feature:
BLAST of EWM27294.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585109476|gb|EWM27294.1|1.402e-109100.00ribosomal protein l17 [Nannochloropsis gaditana][more]
gi|953496455|emb|CEG42055.1|2.101e-4965.04ribosomal protein l17 [Plasmopara halstedii][more]
gi|1173937420|gb|OQR88228.1|2.268e-4966.9450S ribosomal protein L17 [Achlya hypogyna][more]
gi|669169845|ref|XP_008620271.1|3.290e-4965.2950S ribosomal protein L17 [Saprolegnia diclina VS2... [more]
gi|301092240|ref|XP_002996979.1|3.710e-4965.8550S ribosomal protein L17, putative [Phytophthora ... [more]
gi|1173955451|gb|OQS02413.1|2.027e-4866.1250S ribosomal protein L17 [Thraustotheca clavata][more]
gi|675169469|ref|XP_008893619.1|4.842e-4864.23ribosomal protein L17 [Phytophthora parasitica INR... [more]
gi|695434711|ref|XP_009531485.1|8.522e-4864.23Mitochondrial/chloroplast ribosomal protein L17 [P... [more]
gi|971512756|dbj|GAQ85464.1|5.061e-4763.49mitochondrial ribosomal protein L17 precursor [Kle... [more]
gi|1210523644|dbj|GAX17604.1|1.100e-4652.23large subunit ribosomal protein L17 [Fistulifera s... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna3403rna3403Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications