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Properties
| Property Name | Value |
|---|
| Product | polyphosphoinositide binding protein ssh2 |
| Orig transcript id | gnl|cribi|Naga_100080g21.2855.mrna |
| Orig protein id | gnl|cribi|Naga_100080g21.2855 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002461.1 | supercontig | CM002461.1:327281..329668 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna3402 ID=rna3402|Name=rna3402|organism=Nannochloropsis gaditana|type=mRNA|length=1623bp
ATGCGTTGTCTGCTCCTACTCTGTTTCTTCCCTCTCCACGCTACCATAGT
AGAGACCTTCCCATGTGCTCCACGCAGAGTGGGAGCTCTTTCCTACTTCA
ATCGTCAACAGCGCCGCCTTCAGCGCCACGCAGACGACACCAGACACCCA
CCGGGTCTTGTTTCTATTTTGTACGCAAATCCTTCCCTTTTGAAAGAGCC
TGCAGCCCCCCTTGAGTCATCGTCGCCCTGCTCATCAGCACGTGGAACCC
CCCCCCCGTCCCTCTCCCCACCACGCGCGATCCAGCCATCGCCTCGACCG
GTGTCAGATCCTAGCCCTCACGTCGCCACAAATGATACGCCCGTACCTCA
AGCACCTCCTGTGCCACCGGCCTCCACAGCGGCTCCCTCTTCCCCGGCCC
CCCGCGTCCACGACGACGAAACTGACCTGCCCACACACCCAAACGAGACC
CACATTCTCATCCGGCGCATGAGCCTCAAGGACGTCGCCTCCGTCTTCCA
CATCGGCGAGACCGTCTTCTCTTCCGAGTCCTACCCGCAACTCTATCGAA
CCTGGTCCCCCTACGAGGTGACGGACAACCTGAGCACGGACGGAGAGTTT
TGCCTGGTCGCAGAGGAGGTCAGAAAGCTCCCGCCCAAGCGAGGGCGCCG
GCCCAAGGCCTACAAGGAGCACACGAAGCAGGTGGTGGGTTTCCTCTTGG
GCTCGGTCACGGAGAAGAAGAAGAAACAGGAAGGCTGTGCCTACCTGGCC
TGGGTGGCCGTCAACGAAGTCTATCAGAGGCAAGGTATCGGGACCGCTTT
GGTCGGGGCCATCGAGGCGCTCTTTCAGCGGGAAGGCATGGCCACTGTCG
TCGCCGACACGCCGGAGAGCAACGTGCCGGCCCGTCGGTTTCTGGAAAAA
TTGGGCTTTGGCAATCCCATCTCGCATGTGTACATGTCTTTGAATATCGC
GAACTCGAAGGGGAAGGACGGGGTCAAGGCCCCGCGTAAGAAGAAAGGGG
CGCCGAAACAGAAGCCTGTGCGGGTCCGACAAATGGACATTGACGATTTG
GCCAAGGTGTACGCCCTTGGCGAAGAAGTGTTCACACAAGAGCTTTACCC
GAACCTCTACTCGATCTGGAGCGAGGCAGAGGTGGTCGAGCTCTTTGGTT
CCGACAGCGACACGTGCTTTGTGTGCGAGGCCTCAGACAAAACGTTCATG
GGCTTTGTGCTCGGCACGGAGATAGAGAAAAAGGGGAGCAGTTGGCGTTA
TGGCTACCTGCTCTGGCTCGCTGTCTCTCCCAAGGCGCAAGGGCTGGGCG
TGGGTCGCCGGCTTTTGAAAGAGTTCCAGGACACAATGGAGGAGAATGGA
TGTCGCTTGCTGCTTTGCGATACGCAAGCAGACAACTTAGCTGCCCGGGC
GTTCTTTGAGAAATCGGGCTTTCAGGACTGGGAGGACCACGTCTACTACA
CCAAAGAAATGGACATGGAGAGCGAGGAGGAGAAACGCGCACTCGTGGAC
GAAACGGAAGGGGCAGAAGGCAAGAAAGTCAAGAAGACGAAGGGCATGCC
GCAGCCGCGCCTAACGCGGCTGACAAAAACGAAGAGGGTGGGGCAGAAAA
CGGTGGGAGATAAAGTTAAGTGA back to topprotein sequence of rna3402 >rna3402-protein ID=rna3402-protein|Name=rna3402|organism=Nannochloropsis gaditana|type=polypeptide|length=308bp
MGGREGGREERREGGSRSRTGKMSLCSARKWHFERTGLLKVAYLPPSPLA
LSLPPSYLPPSSPPSALIHMPGIPERGLAVRMAVDRECVARYFVAGQWKP
SLRGKTTVDHVLRTIQWRERERVAHLGPEDVLAQARDGYLYVNGTDRVGR
PLIYFSPAFQPNRRPEKAIQYLVYTLERALDLSRQDGVEAYSFIIDCSGF
SLSNMPPINIIKQTFTLLHHHYPTRVGFITFLHTGSAFQFLWKMLTPLVS
PMTRNKILFVPTGEEEKILLERVDPQELDRKYGGAKDFTFEAHDYFGVSK
EEVRRLTK back to topmRNA from alignment at CM002461.1:327281..329668- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna3402 ID=rna3402|Name=rna3402|organism=Nannochloropsis gaditana|type=mRNA|length=2388bp|location=Sequence derived from alignment at CM002461.1:327281..329668- (Nannochloropsis gaditana)
TTCCCCGACTTTTCTGACCTTAATCTTCTCTTTCTAGCCCAAAAATTAGG
TGCTACAGTACCCGCCACCTGCTCTACTGTAGCTTGAATACTTTCAGCAC
CACGGGGTCGGCACGTGAGGGCATCAGAAAGGGATTCAAGCGGGCGCGGC
AGGAGGGAAACTCTCGCCTGTCAGGAGACCCGAGGTTGCCCATGGGAGTA
GAGGAAAGGATGTTTGCCACCAAAAAGACACTCTCCATGCTCTTCCTTTG
TACATTTTGTACCTTTCTGGCAGCCTTAGAGGTGAGAAATCTGGCGCCTT
TGTGGTGGTTGTGTTTTTCTTTCTGTGCGAAGGTGCTACAAAGGGTTGTT
GATCCGTTCCTCGCTTTTTCCCCCGTGTGCCCTTCGTGACGAAGAATGTA
CTCTCCCTTTCATGTCAAAGAAAGTACATCATCGACTTGTCAACTTGTAC
CACTTGCACGTGCAGTACCATCGTGGTGGAGAGATGACCCTTGGTCTTCT
TCAATGGGGCTCGGACCGCTTGTTACACTCGAAGGGCGAAGAGAACGAGG
AGGCAGCGAAGCGGGTGCTGATGATATCGGGCGGTGCAGAGGGAGGGGAG
GAAGAGGGAAGTGTGACCGGCGACACACAAGGCACGTGTGAGAACGGTAC
GTGTGGTCGCGGGTGTGACAGGCTTATGCTCGGACCTGCGCAATGTCCAC
CACCTCCGGCCCCGCCACCCTGACCCCTCCCCTCATCCATCCCAACTACG
TTGCGGCGGCACAGCCATCATTTCCGCCCAGAAGAAACCCTCGCTATTCA
TCAATGTGGGCAGGGTGGCCATAAGGGTCCTGCAGATGCCCTTCCAGACG
GTCCTCGCCCGCCTGCGGAAGCTTTTCTCCAAAGGAGAGCCCTCACCGGA
ATCGCCGTCCCGCCCTCCACACTCTAGGAGGGGGGTCTTCGACATGGAGA
GCTTGACAGACGGGCAGCTTCAGTGGGTTGAGGAAGTTTATCAACGTGAG
GAGACCGATGGGAGGAAGGGAGGGAGGGAGGGAGGAAAGGAGGGAGGGAG
GGAGCCGGAGTAGGACAGGAAAGATGTCGCTTTGCTCTGCCCGGAAATGG
CATTTTGAGCGGACAGGTCTGCTCAAAGTCGCCTACCTACCTCCTTCCCC
CCTCGCTCTTTCTCTTCCTCCCTCCTACCTCCCTCCCTCTTCCCCTCCCT
CAGCCTTGATCCACATGCCCGGGATCCCGGAGCGTGGCCTGGCTGTGCGG
ATGGCCGTCGACCGAGAGTGCGTGGCCCGGTACTTCGTGGCCGGCCAGTG
GAAACCCTCCCTGCGGGGCAAGACCACGGTCGACCACGTGCTGCGCACCA
TCCAGTGGCGGGAGCGGGAGCGGGTGGCCCATCTGGGGCCCGAAGACGTG
TTAGCCCAAGCCCGGGACGGCTACCTGTACGTGAATGGGACGGATCGGGT
CGGCCGCCCCTTGATTTACTTCTCGCCCGCCTTCCAGGTGAGACAGAGAG
AAGCTTGGAGGAGGCGTGGGGCGGGCGGGTGAATGCAGCATTCTACTCGT
TGGATTTGAGGCTGGAGCGGCCGCCTCGAATTAATCCATCTCGCCTGCAC
TGATTCCCCCTCAGAGAACCTCCTCCTCTCCTACCATGCTTAGCCCACCT
TTTCCTTGTTCCCTTCTTCCCCCTGTTCCGTAGCCCAACAGGCGTCCCGA
GAAGGCCATCCAGTACTTGGTGTATACCCTGGAGCGGGCGCTGGATCTGT
CCCGCCAAGACGGCGTGGAGGCCTATTCCTTCATCATCGACTGCAGTGGC
TTCTCGCTCTCCAACATGCCGCCCATCAACATCATCAAACAAACCTTTAC
GCTTCTTCATCACCATTACCCCACGCGGGTGGGGTTCATCACGTTCTTGC
ACACAGGCTCCGCTTTCCAATTTCTCTGGAAAATGCTCACGCCTTTGGTC
TCACCCATGACGCGCAACAAGATCCTCTTTGTTCCCACAGGGGAAGAGGA
AAAGATTCTTTTGGAGCGTGTGGATCCTCAAGAATTGGACAGGAAGTATG
GTGGTGCGAAAGATTTCACGTTTGAGGCGCATGACTACTTTGGAGTTAGC
AAGGAGGAGGTTAGGAGGCTGACAAAGTGAAACGAGCGTTGAACGACGGG
CAACCAAGAAAGAACGTAGACAAGGCAGCATTTAAAATGTATGAGCTGAT
AAATTACAGCACGTCGATGGAAGCTCTTCAATCTGTAGTTATAATCAGAA
AGTGTTGGTATAAGTCGAGCGCCCACAGTGTCCGGGGCAATGAACAGGAG
GCCGACAAGGGCACTCATCACTGTACATGATCATTGCGCCTGCCCGCGAG
TAACGCTAATGAAAAGAAAAACCTTCACAGTCTGACCA back to topCoding sequence (CDS) from alignment at CM002461.1:327281..329668- >rna3402 ID=rna3402|Name=rna3402|organism=Nannochloropsis gaditana|type=CDS|length=1854bp|location=Sequence derived from alignment at CM002461.1:327281..329668- (Nannochloropsis gaditana)
CCCAACAGGCGTCCCGAGAAGGCCATCCAGTACTTGGTGTATACCCTGGA
GCGGGCGCTGGATCTGTCCCGCCAAGACGGCGTGGAGGCCTATTCCTTCA
TCATCGACTGCAGTGGCTTCTCGCTCTCCAACATGCCGCCCATCAACATC
ATCAAACAAACCTTTACGCTTCTTCATCACCATTACCCCACGCGGGTGGG
GTTCATCACGTTCTTGCACACAGGCTCCGCTTTCCAATTTCTCTGGAAAA
TGCTCACGCCTTTGGTCTCACCCATGACGCGCAACAAGATCCTCTTTGTT
CCCACAGGGGAAGAGGAAAAGATTCTTTTGGAGCGTGTGGATCCTCAAGA
ATTGGACAGGAAGTATGGTGGTGCGAAAGATTTCACGTTTGAGGCGCATG
ACTACTTTGGAGTTAGCAAGGAGGAGGTTAGGAGGCTGACAAAGTGAATG
GGAGGAAGGGAGGGAGGGAGGGAGGAAAGGAGGGAGGGAGGGAGCCGGAG
TAGGACAGGAAAGATGTCGCTTTGCTCTGCCCGGAAATGGCATTTTGAGC
GGACAGGTCTGCTCAAAGTCGCCTACCTACCTCCTTCCCCCCTCGCTCTT
TCTCTTCCTCCCTCCTACCTCCCTCCCTCTTCCCCTCCCTCAGCCTTGAT
CCACATGCCCGGGATCCCGGAGCGTGGCCTGGCTGTGCGGATGGCCGTCG
ACCGAGAGTGCGTGGCCCGGTACTTCGTGGCCGGCCAGTGGAAACCCTCC
CTGCGGGGCAAGACCACGGTCGACCACGTGCTGCGCACCATCCAGTGGCG
GGAGCGGGAGCGGGTGGCCCATCTGGGGCCCGAAGACGTGTTAGCCCAAG
CCCGGGACGGCTACCTGTACGTGAATGGGACGGATCGGGTCGGCCGCCCC
TTGATTTACTTCTCGCCCGCCTTCCAGCCCAACAGGCGTCCCGAGAAGGC
CATCCAGTACTTGGTGTATACCCTGGAGCGGGCGCTGGATCTGTCCCGCC
AAGACGGCGTGGAGGCCTATTCCTTCATCATCGACTGCAGTGGCTTCTCG
CTCTCCAACATGCCGCCCATCAACATCATCAAACAAACCTTTACGCTTCT
TCATCACCATTACCCCACGCGGGTGGGGTTCATCACGTTCTTGCACACAG
GCTCCGCTTTCCAATTTCTCTGGAAAATGCTCACGCCTTTGGTCTCACCC
ATGACGCGCAACAAGATCCTCTTTGTTCCCACAGGGGAAGAGGAAAAGAT
TCTTTTGGAGCGTGTGGATCCTCAAGAATTGGACAGGAAGTATGGTGGTG
CGAAAGATTTCACGTTTGAGGCGCATGACTACTTTGGAGTTAGCAAGGAG
GAGGTTAGGAGGCTGACAAAGTGAATGGGAGGAAGGGAGGGAGGGAGGGA
GGAAAGGAGGGAGGGAGGGAGCCGGAGTAGGACAGGAAAGATGTCGCTTT
GCTCTGCCCGGAAATGGCATTTTGAGCGGACAGGTCTGCTCAAAGTCGCC
TACCTACCTCCTTCCCCCCTCGCTCTTTCTCTTCCTCCCTCCTACCTCCC
TCCCTCTTCCCCTCCCTCAGCCTTGATCCACATGCCCGGGATCCCGGAGC
GTGGCCTGGCTGTGCGGATGGCCGTCGACCGAGAGTGCGTGGCCCGGTAC
TTCGTGGCCGGCCAGTGGAAACCCTCCCTGCGGGGCAAGACCACGGTCGA
CCACGTGCTGCGCACCATCCAGTGGCGGGAGCGGGAGCGGGTGGCCCATC
TGGGGCCCGAAGACGTGTTAGCCCAAGCCCGGGACGGCTACCTGTACGTG
AATGGGACGGATCGGGTCGGCCGCCCCTTGATTTACTTCTCGCCCGCCTT
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