EWM27291.1, cds3393 (CDS) Nannochloropsis gaditana

Overview
NameEWM27291.1
Unique Namecds3393
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002461.1:328182..328661 -
Alignment locationCM002461.1:327539..327985 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM27291.1
Productpolyphosphoinositide binding protein ssh2
Orig transcript idgnl|cribi|Naga_100080g21.2855.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002461.1supercontigCM002461.1:328182..328661 -
CM002461.1supercontigCM002461.1:327539..327985 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: INTERPRO
TermDefinition
IPR001251CRAL-TRIO_dom
Homology
BLAST of EWM27291.1 vs. NCBI_GenBank
Match: gi|585109473|gb|EWM27291.1| (polyphosphoinositide binding protein ssh2 [Nannochloropsis gaditana])

HSP 1 Score: 634.795 bits (1636), Expect = 0.000e+0
Identity = 308/308 (100.00%), Postives = 308/308 (100.00%), Query Frame = 0
Query:    1 MGGREGGREERREGGSRSRTGKMSLCSARKWHFERTGLLKVAYLPPSPLALSLPPSYLPPSSPPSALIHMPGIPERGLAVRMAVDRECVARYFVAGQWKPSLRGKTTVDHVLRTIQWRERERVAHLGPEDVLAQARDGYLYVNGTDRVGRPLIYFSPAFQPNRRPEKAIQYLVYTLERALDLSRQDGVEAYSFIIDCSGFSLSNMPPINIIKQTFTLLHHHYPTRVGFITFLHTGSAFQFLWKMLTPLVSPMTRNKILFVPTGEEEKILLERVDPQELDRKYGGAKDFTFEAHDYFGVSKEEVRRLTK 308
            MGGREGGREERREGGSRSRTGKMSLCSARKWHFERTGLLKVAYLPPSPLALSLPPSYLPPSSPPSALIHMPGIPERGLAVRMAVDRECVARYFVAGQWKPSLRGKTTVDHVLRTIQWRERERVAHLGPEDVLAQARDGYLYVNGTDRVGRPLIYFSPAFQPNRRPEKAIQYLVYTLERALDLSRQDGVEAYSFIIDCSGFSLSNMPPINIIKQTFTLLHHHYPTRVGFITFLHTGSAFQFLWKMLTPLVSPMTRNKILFVPTGEEEKILLERVDPQELDRKYGGAKDFTFEAHDYFGVSKEEVRRLTK
Sbjct:    1 MGGREGGREERREGGSRSRTGKMSLCSARKWHFERTGLLKVAYLPPSPLALSLPPSYLPPSSPPSALIHMPGIPERGLAVRMAVDRECVARYFVAGQWKPSLRGKTTVDHVLRTIQWRERERVAHLGPEDVLAQARDGYLYVNGTDRVGRPLIYFSPAFQPNRRPEKAIQYLVYTLERALDLSRQDGVEAYSFIIDCSGFSLSNMPPINIIKQTFTLLHHHYPTRVGFITFLHTGSAFQFLWKMLTPLVSPMTRNKILFVPTGEEEKILLERVDPQELDRKYGGAKDFTFEAHDYFGVSKEEVRRLTK 308          
BLAST of EWM27291.1 vs. NCBI_GenBank
Match: gi|298708308|emb|CBJ48371.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 130.954 bits (328), Expect = 2.724e-33
Identity = 68/209 (32.54%), Postives = 105/209 (50.24%), Query Frame = 0
Query:   89 VARYFVAGQWKPSLRGKTTVDHVLRTIQWRERERVAHLGPEDVLAQARDGYLYVNGTDRVGRPLIYFSPAFQPNRRPEKAIQYLVYTLERALDLSRQDGVEAYSFIIDCSGFSLSNMPPINIIKQTFTLLHHHYPTRVGFITFLHTGSAFQFLWKMLTPLVSPMTRNKILFVPTGEEEKILLERVDPQELDRKY-GGAKDFTFEAHDYF 296
            + RY     W     G+   D V  T++WRE      L    V  +A+ G +YV G DR  RP+I++ P  + +   EK +  L +TLERA   S   G   ++ + DCSGF  S  PP+ ++K  F  +  HYP R+G++  ++ G    F+WK+++ ++   T+ KI F+   E E  L   +DP  L     GG  DFT+   +Y 
Sbjct:    1 MMRYLEMAYWTMESMGQPLPDAVASTVRWREDATPHLLTDNQVAEEAKYGKMYVRGLDRQQRPIIHYRPGLEKSFDTEKGLNLLFHTLERAKG-SLPKGQTQFAVVADCSGFGPSKTPPLPMLKTAFITMQRHYPMRLGYVVIVNAGGPITFVWKLISTVLEERTKEKIAFLSKKEAEATLTGLIDPSALPASLPGGLDDFTYSNEEYL 208          
BLAST of EWM27291.1 vs. NCBI_GenBank
Match: gi|290971277|ref|XP_002668443.1| (predicted protein [Naegleria gruberi] >gi|284081854|gb|EFC35699.1| predicted protein, partial [Naegleria gruberi])

HSP 1 Score: 131.339 bits (329), Expect = 7.853e-33
Identity = 65/185 (35.14%), Postives = 110/185 (59.46%), Query Frame = 0
Query:  115 IQWRERERVAHLGPEDVLAQARDGYLYVNGTDRVGRPLIYFSPAFQPNRRPEKAIQYLVYTLERALDLSRQDGVEAYSFIIDCSGFSLSNMPPINIIKQTFTLLHHHYPTRVGFITFLHTGSAFQFLWKMLTPLVSPMTRNKILFVPTGEEE--KILLERVDPQELDRKYGGAKDFTFEAHDYFG 297
            ++WR   +   +  +++  ++  G L+  G D+  RP+IY  PA + +   EK I+ LVYT+ERA+D +  +GVE  ++IID +G++  N PP ++ KQT ++L+  YP R+G    + T   F   W+ ++P ++P+T+NKI FV   E E  KI  + +D  ++D  +GG   F FE  D++G
Sbjct:   84 LEWRRTFKPDEITAKELEDESSSGKLFQRGFDKNNRPIIYMFPARENSTDYEKNIKLLVYTMERAVD-AMPEGVEQMTWIIDFNGYTTRNAPPFSVAKQTLSILNECYPERLGACFMVDTPFIFNIFWRAISPFINPVTKNKIHFVNGKESEKAKIFGKHIDLAQIDTTWGGTSTFVFEHSDFWG 267          
BLAST of EWM27291.1 vs. NCBI_GenBank
Match: gi|290999381|ref|XP_002682258.1| (hypothetical protein NAEGRDRAFT_78034 [Naegleria gruberi] >gi|284095885|gb|EFC49514.1| hypothetical protein NAEGRDRAFT_78034 [Naegleria gruberi])

HSP 1 Score: 132.109 bits (331), Expect = 9.481e-33
Identity = 68/198 (34.34%), Postives = 116/198 (58.59%), Query Frame = 0
Query:  115 IQWRERERVAHLGPEDVLAQARDGYLYVNGTDRVGRPLIYFSPAFQPNRRPEKAIQYLVYTLERALDLSRQDGVEAYSFIIDCSGFSLSNMPPINIIKQTFTLLHHHYPTRVGFITFLHTGSAFQFLWKMLTPLVSPMTRNKILFVPTGEEE--KILLERVDPQELDRKYGGAKDFTFEAHDYFG----VSKEEVRRL 306
            ++WR   +   +  +++  ++  G L+  G D+  RP+IY  PA + +   EK I+ LVYT+ERA+D +  +GVE  ++IID +G++  N PP ++ KQT ++L+  YP R+G    + T   F   W+ ++P ++P+T+NKI FV   E E  KI  + +D  ++D  +GG   F FE  D++G    + K  ++RL
Sbjct:   84 LEWRRTFKPDEITAKELEDESSSGKLFQRGFDKNNRPIIYMFPARENSTDYEKNIKLLVYTMERAVD-AMPEGVEQMTWIIDFNGYTTRNAPPFSVAKQTLSILNECYPERLGACFMVDTPFIFNIFWRAISPFINPVTKNKIHFVNGKESEKAKIFGKHIDLAQIDTTWGGTSTFVFEHSDFWGNVMELDKHRLKRL 280          
BLAST of EWM27291.1 vs. NCBI_GenBank
Match: gi|299473160|emb|CBN78736.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 133.265 bits (334), Expect = 2.905e-32
Identity = 71/229 (31.00%), Postives = 113/229 (49.34%), Query Frame = 0
Query:   71 PGIPERGLAVRMAVDRECVARYFVAGQWKPSLRGKTTVDHVLRTIQWRERERVAHLGPEDVLAQARDGYLYVNGTDRVGRPLIYFSPAFQPNRRPEKAIQYLVYTLERALDLSRQDGVEAYSFIIDCSGFSLSNMPPINIIKQTFTLLHHHYPTRVGFITFLHTGSAFQFLWKMLTPLVSPMTRNKILFVPT---GEEEKILLERVDPQELDRKYGGAKDFTFEAHDYF 296
            PG+  R   V   +D     R+  A  W     GK   D +  +I WRE+     L  EDV+ Q   G + V G D   RP++YF PA       +   + ++Y LERA+ L  ++  + Y+ +IDC G  L  +PP+  +K+ F LL HHYP R+G + F + G +    WK+++PL+   T+ K+  +P+   G+  K     + P +L    GG   + ++   YF
Sbjct:  187 PGLERRAKKVHHELDTVAFGRFLEAAFWALEHDGKRVSDFIEESIAWREKIGADRLRKEDVVDQGCRGAIIVKGHDLSRRPVVYFRPALDGRMEGDGNSKLMIYNLERAIRLMPRNSWQ-YTIVIDCEGMGLKQLPPVTYMKKMFKLLSHHYPMRLGHVLFTNVGPSVMLCWKVVSPLLQARTKAKMHLIPSTALGQTAKY----IHPSQLLSFAGGKSTWQYDPAVYF 410          
BLAST of EWM27291.1 vs. NCBI_GenBank
Match: gi|831757515|ref|XP_012749054.1| (hypothetical protein SAMD00019534_112710 [Acytostelium subglobosum LB1] >gi|735849883|dbj|GAM28095.1| hypothetical protein SAMD00019534_112710 [Acytostelium subglobosum LB1])

HSP 1 Score: 127.487 bits (319), Expect = 6.888e-31
Identity = 68/212 (32.08%), Postives = 116/212 (54.72%), Query Frame = 0
Query:   88 CVARYFVAGQWKPSLRGKTTVDHVLRTIQWRERERVAHLGPEDVLAQARDGYLYVNGTDRVGRPLIYFSPAFQPNRRPEKAIQYLVYTLERALD-LSRQDGVEAYSFIIDCSGFSLSNMPPINIIKQTFTLLHHHYPTRVGFITFLHTGSAFQFLWKMLTPLVSPMTRNKILFVPTGEE--EKILLERVDPQELDRKYGGAKDFTFEAHDYF 296
            C  RY  A  +  +     + + + +T+ WR   +   +  E +  +A  G  YVNG  + G+P+IY  P+ +  +  ++ IQ +VYTLERA++ +   +GVE  + +ID SG+S+ NMPP ++ KQ   +L  HYP R+G+   +     F   W  ++P ++  T  KI F+  GE+    IL +  D Q L+++YGG  +F+F   +Y+
Sbjct:   83 CCLRYLRARDYDLT----QSFNMLKKTLAWRRDYKPWEITAEHLSFEAATGKQYVNGKIKDGKPVIYMRPSRENTKTHDRQIQLMVYTLERAIEQMDAANGVEQVALMIDFSGYSMFNMPPTSVSKQCLDILSDHYPERLGYAFIIDPPYIFNIFWNFVSPFINKHTSKKIHFL-KGEKLRRNILSQHFDEQVLEKEYGGVSEFSFVREEYW 289          
BLAST of EWM27291.1 vs. NCBI_GenBank
Match: gi|1160566429|ref|XP_020428424.1| (cellular retinaldehyde-binding/triple function domain-containing protein [Polysphondylium pallidum PN500] >gi|281202087|gb|EFA76292.1| cellular retinaldehyde-binding/triple function domain-containing protein [Polysphondylium pallidum PN500])

HSP 1 Score: 122.094 bits (305), Expect = 5.854e-29
Identity = 69/216 (31.94%), Postives = 119/216 (55.09%), Query Frame = 0
Query:   81 RMAVDRECVARYFVAGQWKPSLRGKTTVDHVLRTIQWRERERVAHLGPEDVLAQARDGYLYVNGTDRVGRPLIYFSPAFQPNRRPEKAIQYLVYTLERAL---DLSRQDGVEAYSFIIDCSGFSLSNMPPINIIKQTFTLLHHHYPTRVGFITFLHTGSAFQFLWKMLTPLVSPMTRNKILFVPTGEEEKI--LLERVDPQELDRKYGGAKDFTFE 291
            ++ VD   + RY  A ++      + + + + +T++WR++ +   +  E +  +A  G  Y NG  + G+P IY  P  +  +  E+ IQ LVYTLERA+   D S + GVE  + +ID +G+SL N PP+++ +QT  +L  HYP R+G    +     F  L+  + P V+P T  KI+FV  GE+ K+  + E  D + ++R + G  +F ++
Sbjct:   66 KLWVDDMMILRYLRAREYD----LQASFNLLKKTLEWRKQYKPDEITAEHLSYEASTGKQYCNGKTKDGKPAIYMRPVRENTKNYERQIQLLVYTLERAIQHIDRSTETGVEQLAIVIDFNGYSLFNAPPMSVARQTLEILSDHYPERLGTAFVVDPPMIFNILYNAIMPFVNPNTAKKIVFV-KGEKAKLKTMHEHFDIEHIERPHTGTSEFEYD 276          
BLAST of EWM27291.1 vs. NCBI_GenBank
Match: gi|470325800|ref|XP_004364555.1| (hypothetical protein CAOG_01687 [Capsaspora owczarzaki ATCC 30864] >gi|765549744|gb|KJE90365.1| hypothetical protein CAOG_001687 [Capsaspora owczarzaki ATCC 30864])

HSP 1 Score: 122.865 bits (307), Expect = 5.933e-29
Identity = 68/224 (30.36%), Postives = 116/224 (51.79%), Query Frame = 0
Query:   88 CVARYFVAGQWKPSLRGKTTVDHVLRTIQWRERERVAHLGPED--VLAQARDGYLYVNGTDRVGRPLIYFSPAFQPNRRPEKAIQYLVYTLERAL-DLSRQDGVEAYSFIIDCSGFSLSNMPPINIIKQTFTLLHHHYPTRVGFITFLHTGSAFQFLWKMLTPLVSPMTRNKILFVPTGEEEKI--LLERVDPQELDRKYGGAKDFTFEAHDYFGVSKEEVRRL 306
            C+ARY  A  W      +     +L T+ WRE  +V  + PED  ++ +   G  Y +G DR GRP+IY  P FQ  +   + ++Y V+ LE+A+  ++  +GVE  + +ID  G+S+ N PP++  K+  ++L + YP R+G    +     F   +K++ P +   TR KI F+   ++ K   L + +D + L+  YGG     +++  Y     EE+ R 
Sbjct:  102 CLARYLRARDWDVEKAHQL----MLGTLTWREEFKVHEISPEDPLIVEEGLTGKTYRHGRDRAGRPIIYMKPRFQNTKNYAEQVRYTVHHLEQAMRSMNLHEGVEQMTLLIDFQGYSVMNAPPMSQTKEVMSILLNCYPERLGLALMVDAPFLFNMAYKVVYPFLPTETRKKIHFISGNQQSKATSLSQHIDLETLEHDYGGLVKAKYDSAAYTKAEAEELGRF 321          
BLAST of EWM27291.1 vs. NCBI_GenBank
Match: gi|545704891|ref|XP_005704767.1| (SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein isoform 1 [Galdieria sulphuraria] >gi|452821214|gb|EME28247.1| SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein isoform 1 [Galdieria sulphuraria])

HSP 1 Score: 119.398 bits (298), Expect = 3.175e-28
Identity = 70/223 (31.39%), Postives = 110/223 (49.33%), Query Frame = 0
Query:   84 VDRECVARYFVAGQWKPSLRGKTTVDHVLRTIQWR---ERERVAHLGPEDVLAQARDGYLYVNGTDRVGRPLIYFSPAFQPNRRPEKAIQYLVYTLERALDLSRQDGVEAYSFIIDCSGFSLSNMPPINIIKQTFTLLHHHYPTRVGFITFLHTGSAFQFLWKMLTPLVSPMTRNKILFVPTGEEEK------ILLERVDPQELDRKYGGAKDFTFEAHDYFG 297
             D  C+ RY  A     + +    ++ V RT++WR   E E + +  P  V  +     LYV G D+ GRP+IY  P +Q  +     +Q+LVYTLE+A+    Q+GVE     ID  G+S+ N P I ++++T T+L  +YP R+G    L+  + F   +K++ P +   T  KI F      +K         +  D  EL+  YGG  D  ++  +YF 
Sbjct:   52 CDDACLLRYLRAR----NNQVDKALELVRRTLEWRKNFEVEELMNKVPPQVKEEGSSQKLYVGGKDKYGRPIIYMKPKYQNTKESIHQLQHLVYTLEKAIR-RMQNGVEKLILFIDFEGYSMRNTPSIKMMRETLTVLQDYYPERLGLAICLNAPTLFYTFYKIIKPFIDKNTVQKIYFFKVNNTKKSKEWMEFAQQVFDLDELEVDYGGRNDKEYDPEEYFS 269          
BLAST of EWM27291.1 vs. NCBI_GenBank
Match: gi|1160558425|ref|XP_020434034.1| (hypothetical protein PPL_05149 [Polysphondylium pallidum PN500] >gi|281207737|gb|EFA81917.1| hypothetical protein PPL_05149 [Polysphondylium pallidum PN500])

HSP 1 Score: 119.013 bits (297), Expect = 3.436e-28
Identity = 63/186 (33.87%), Postives = 103/186 (55.38%), Query Frame = 0
Query:  108 VDHVLRTIQWRERERVAHLGPEDVLAQARDGYLYVNGTDRVGRPLIYFSPAFQPNRRPEKAIQYLVYTLERALD-LSRQDGVEAYSFIIDCSGFSLSNMPPINIIKQTFTLLHHHYPTRVGFITFLHTGSAFQFLWKMLTPLVSPMTRNKILFVPTGEEEKILLE-RVDPQELDRKYGGAKDFTFE 291
            +D   +TI WR   +   +  E +  +   G  YVNG  +   P+IY  P+ +  +  E+ IQ +VYTLERA++ +  + GVE  + +ID SG+S+ NMPP ++ KQ   +L +HYP R+GF   +     F   W  ++P ++  T +KI+FV   ++ + LL    +   L+ +YGG  DF F+
Sbjct:   48 LDEREKTIAWRREYKPHEITAEHLSFENSTGKQYVNGKTKENLPVIYQRPSRENTKTYERQIQLMVYTLERAIEHMDEKRGVEQVALMIDFSGYSMFNMPPTSVSKQCLDILLNHYPERLGFAFIIDPPMIFNVFWSFVSPFINKNTASKIVFVKGEKQRRNLLHTHFEDNVLEAEYGGKGDFVFQ 233          
The following BLAST results are available for this feature:
BLAST of EWM27291.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585109473|gb|EWM27291.1|0.000e+0100.00polyphosphoinositide binding protein ssh2 [Nannoch... [more]
gi|298708308|emb|CBJ48371.1|2.724e-3332.54conserved unknown protein [Ectocarpus siliculosus][more]
gi|290971277|ref|XP_002668443.1|7.853e-3335.14predicted protein [Naegleria gruberi] >gi|28408185... [more]
gi|290999381|ref|XP_002682258.1|9.481e-3334.34hypothetical protein NAEGRDRAFT_78034 [Naegleria g... [more]
gi|299473160|emb|CBN78736.1|2.905e-3231.00conserved unknown protein [Ectocarpus siliculosus][more]
gi|831757515|ref|XP_012749054.1|6.888e-3132.08hypothetical protein SAMD00019534_112710 [Acytoste... [more]
gi|1160566429|ref|XP_020428424.1|5.854e-2931.94cellular retinaldehyde-binding/triple function dom... [more]
gi|470325800|ref|XP_004364555.1|5.933e-2930.36hypothetical protein CAOG_01687 [Capsaspora owczar... [more]
gi|545704891|ref|XP_005704767.1|3.175e-2831.39SEC14 cytosolic factor family protein / phosphogly... [more]
gi|1160558425|ref|XP_020434034.1|3.436e-2833.87hypothetical protein PPL_05149 [Polysphondylium pa... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna3402rna3402Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications