rna34, rna34 (mRNA) Nannochloropsis gaditana

Overview
Namerna34
Unique Namerna34
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length612
Alignment locationCM002455.1:103474..104196 -

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100568g1.696.mrna
Orig protein idgnl|cribi|Naga_100568g1.696
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002455.1supercontigCM002455.1:103474..104196 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100568g1gene32Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna34rna34-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM30638.1cds34Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna34 ID=rna34|Name=rna34|organism=Nannochloropsis gaditana|type=mRNA|length=612bp
CTGATGTCTGCCCTCTGACCATGTGGCATATCTCTTTCACGCCCGCCCTC
GCTCCTCAACCCCTCCTTTCGTCCCTCACTCTCTTCCCTCCTCCCCGCAG
AGCGAGGAGGAATTCGTCTCCATCATGAAGAATTTAAACCTCCCCTACCC
GAAAAAGATCGACGATGCCCTCCCCAAGAACCTCGTCTGTGGCTCGTAGG
CAGTCCTCTCTCCCTCCTTCCCTCCCTCCCTCCCTTTTCCCTTTTAAGCG
GGCTCTGGACAAGGAGCTTCTAAATAATAGGGCGGGAAGGAGGGCGGGAA
GGAGGGCGGGAAGGAGGGAGTGCAAGTCCTAAGCGAGCCGGCGGAGGCGC
GGTGTATACGTATATGGACATAAACATGGTAAAGGATAAGAAGATGGGAA
TGAAAAAAATGCGAAGTAGGAGGAGGCGGGGATGGGAACGGAAGAAGGAA
GGAAAGAAGAATGACGTCAAGGAACTATGGCGAGGGAAGGGAGGGAAGAG
GGCGGGGAAGCGGAGGCTTGTGAATGAGTGCTCGAAAACAAAAGGAATGA
ATGAGGCGATCGTAAGGCCTAGGGTCGATACAAAAGGTGCTGAGAGGTCC
GGCGTGCCCTGA
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protein sequence of rna34

>rna34-protein ID=rna34-protein|Name=rna34|organism=Nannochloropsis gaditana|type=polypeptide|length=185bp
MQMEWEVPRCGFHCHHDHKPQPKFVLSESHRRCSMAPSSLKPFGQNGVHI
AGALTDDEIKELAPRFPAWLYLCCDTGSDTGAPNGGFPSVARGHDGGKHV
HVPVDHTDLDMALTRRLLGAYTTLLPPTVRSPLLISCYGQRVSPRAGTRR
SAGNWAQRGPLLFQQPRLDRLGSGLSILHFDGAGT
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mRNA from alignment at CM002455.1:103474..104196-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna34 ID=rna34|Name=rna34|organism=Nannochloropsis gaditana|type=mRNA|length=723bp|location=Sequence derived from alignment at CM002455.1:103474..104196- (Nannochloropsis gaditana)
ATGCAAATGGAATGGGAGGTGCCAAGATGTGGATTTCATTGCCACCACGA
TCACAAGCCACAGCCTAAATTTGTTCTATCGGAATCGCATCGACGCTGCA
GTATGGCCCCGTCTTCATTGAAGCCTTTTGGTCAAAATGGCGTCCACATC
GCAGGTAGATTGCAGAGCAAAAGATCGCCTTCGTTGGTTCCACTAGGACT
TCATTGGTATCGTTTCTTGACGCGTTGTTTTCTTCTCTATCCCACCTCTC
CCAGGCGCCTTGACTGACGACGAAATCAAAGAGCTAGCTCCCCGGTTTCC
GGCGTGGCTCTACCTCTGTTGCGACACAGGATCCGACACAGGCGCGCCCA
ATGGGGGTTTTCCTAGTGTTGCTCGAGGCCATGACGGGGGCAAACACGTC
CATGTGCCTGTCGATCACACAGACCTCGACATGGCCTTGACGCGTCGCCT
TCTAGGGGCATACACCACCCTCCTCCCTCCCACCGTGCGGAGTCCCCTCC
TCATCAGTTGTCGGTCGAGCGCCCGGGCCGGCGCCGTTGCCTTGCTCTTT
CATGCGTACGACGCCAAGCTCCAGGCTATGGTCAGCGCGTCTCCCCTCGT
GCTGGCACCCGAAGAAGTGCTGGAAATTGGGCGCAGCGCGGGCCTCTCCT
GTTTCAACAACCCCGCCTTGACCGACTGGGTAGTGGCCTCTCTATACTTC
ATTTTGATGGGGCCGGAACATAG
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Coding sequence (CDS) from alignment at CM002455.1:103474..104196-

>rna34 ID=rna34|Name=rna34|organism=Nannochloropsis gaditana|type=CDS|length=1674bp|location=Sequence derived from alignment at CM002455.1:103474..104196- (Nannochloropsis gaditana)
GCTATGGTCAGCGCGTCTCCCCTCGTGCTGGCACCCGAAGAAGTGCTGGA
AATTGGGCGCAGCGCGGGCCTCTCCTGTTTCAACAACCCCGCCTTGACCG
ACTGGGTAGTGGCCTCTCTATACTTCATTTTGATGGGGCCGGAACATAGG
CGCCTTGACTGACGACGAAATCAAAGAGCTAGCTCCCCGGTTTCCGGCGT
GGCTCTACCTCTGTTGCGACACAGGATCCGACACAGGCGCGCCCAATGGG
GGTTTTCCTAGTGTTGCTCGAGGCCATGACGGGGGCAAACACGTCCATGT
GCCTGTCGATCACACAGACCTCGACATGGCCTTGACGCGTCGCCTTCTAG
GGGCATACACCACCCTCCTCCCTCCCACCGTGCGGAGTCCCCTCCTCATC
AGTTATGCAAATGGAATGGGAGGTGCCAAGATGTGGATTTCATTGCCACC
ACGATCACAAGCCACAGCCTAAATTTGTTCTATCGGAATCGCATCGACGC
TGCAGTATGGCCCCGTCTTCATTGAAGCCTTTTGGTCAAAATGGCGTCCA
CATCGCAGGCTATGGTCAGCGCGTCTCCCCTCGTGCTGGCACCCGAAGAA
GTGCTGGAAATTGGGCGCAGCGCGGGCCTCTCCTGTTTCAACAACCCCGC
CTTGACCGACTGGGTAGTGGCCTCTCTATACTTCATTTTGATGGGGCCGG
AACATAGGCGCCTTGACTGACGACGAAATCAAAGAGCTAGCTCCCCGGTT
TCCGGCGTGGCTCTACCTCTGTTGCGACACAGGATCCGACACAGGCGCGC
CCAATGGGGGTTTTCCTAGTGTTGCTCGAGGCCATGACGGGGGCAAACAC
GTCCATGTGCCTGTCGATCACACAGACCTCGACATGGCCTTGACGCGTCG
CCTTCTAGGGGCATACACCACCCTCCTCCCTCCCACCGTGCGGAGTCCCC
TCCTCATCAGTTATGCAAATGGAATGGGAGGTGCCAAGATGTGGATTTCA
TTGCCACCACGATCACAAGCCACAGCCTAAATTTGTTCTATCGGAATCGC
ATCGACGCTGCAGTATGGCCCCGTCTTCATTGAAGCCTTTTGGTCAAAAT
GGCGTCCACATCGCAGGCTATGGTCAGCGCGTCTCCCCTCGTGCTGGCAC
CCGAAGAAGTGCTGGAAATTGGGCGCAGCGCGGGCCTCTCCTGTTTCAAC
AACCCCGCCTTGACCGACTGGGTAGTGGCCTCTCTATACTTCATTTTGAT
GGGGCCGGAACATAGGCGCCTTGACTGACGACGAAATCAAAGAGCTAGCT
CCCCGGTTTCCGGCGTGGCTCTACCTCTGTTGCGACACAGGATCCGACAC
AGGCGCGCCCAATGGGGGTTTTCCTAGTGTTGCTCGAGGCCATGACGGGG
GCAAACACGTCCATGTGCCTGTCGATCACACAGACCTCGACATGGCCTTG
ACGCGTCGCCTTCTAGGGGCATACACCACCCTCCTCCCTCCCACCGTGCG
GAGTCCCCTCCTCATCAGTTATGCAAATGGAATGGGAGGTGCCAAGATGT
GGATTTCATTGCCACCACGATCACAAGCCACAGCCTAAATTTGTTCTATC
GGAATCGCATCGACGCTGCAGTATGGCCCCGTCTTCATTGAAGCCTTTTG
GTCAAAATGGCGTCCACATCGCAG
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Synonyms
Publications