rna3397, rna3397 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna3397
Unique Name	rna3397
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1569
Alignment location	CM002461.1:310235..312615 +

Link to JBrowse

Properties


Property Name	Value
Product	abc transporter atp-binding protein
Orig transcript id	gnl\|cribi\|Naga_100080g16.2850.mrna
Orig protein id	gnl\|cribi\|Naga_100080g16.2850
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002461.1	supercontig	CM002461.1:310235..312615 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100080g16	gene3272	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna3397	rna3397-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM27286.1	cds3388	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002461.1:310235..312615+
coding sequence from alignment at CM002461.1:310235..312615+

mRNA sequence

>rna3397 ID=rna3397|Name=rna3397|organism=Nannochloropsis gaditana|type=mRNA|length=1569bp
ATGGGTGTCTCCTGGTTTCTGCTGCTATGCATTGGTGTAATGATTGTCGT
TTTGCTTGCCATAAACGTCTACATGCTCGTGCATTGGTCCCACCCAGATG
ACAAAAACGAAGCGTACTTCCCAAAGGCTCTCGTGATTTTTGGCCTGCTC
CTCGCCGAGGCCTGCGTTCTCGCTGTTCCTTTAGACGTGGCAAACAACAG
CAGCAATATTGGCTGTACGCAAGGCTGGGTTCAGAGCTGTGGCGGGCTGG
ACATGAGTCTTTTTTGGCAGATCATGTACGTGCTCATCACCGTCCTCTGC
GTGGCCATCCTGCCCTTCGCCATTTTTTACTACGAGGATGACGACGGCCT
GACAGAGGGAAAAGGACAAGCCTTCTGTGGCGCTGTTAAATACACAGCTG
TCTGCCTGTTCGCATCGGCCCTGGTGGTGGGCCTCTGTTATTTCTTCATT
GGTCGTGTCCGCCTCCCTGTGCTCGAGGTCCCCGCCAGCGTGGTCGACCT
CACCGTCCATTCCCTCGGGACCCCCCGCAACGCCACGCTGGACTCGAGCG
AAATCGCCCTGGCAGGGGCCTTGATGAAGGACAGTTTCCGGACCAAGATT
TCCTTCCAGTCCACTTTCATCGTCTACATGATCGCCTTGGTGTCCTTCGT
CGGCTGGTTCCTGTTCGCCATATTCGGAGGGGTGGGGTTAGCGGCCTTGC
CCATGGATCTGATCACAGCCTTCACGACCAGGCCCAAGCCCATGCCGGCG
GAAGAATTGGCGCACGAGCAGCTGCTCCTGCAAGCGCGGGTCGCGGACTT
GATCGAGGTAGGCCACCTTGTCCAGTCCGAGCGGAAGGACCGGCGTTCCA
AAGGCGGCAACTTTTTGGCCCGCACGGTTGCAGAACGGAGCGAGCGCAAC
ACTCTCCTCAAATTCAAACAAATGGTGTACATGCTGGAAAGTGACTATGA
GAAGTTTCGGGCCGCGAAGGATATGGGGAAGTACAATCCTCTGTGGCCCA
TCGGCATGCTCCTGCTCGGGATGCTCGCCTCCATCCTGACAGTTATGTGG
GTGCTGCACGTGATTGTTTACATGTTCTTCTTCCCGCCCCTGTCGCAATT
TTTGAACCAGTACTTCATCCAGTTTGACGAATGGTTTCCCTTATTCGGGG
TCGTTTCCGTGGCGATTTTTGTCCTCTATCTACTCTTTTGCGTGGTAGCA
GGCAATTTCAAGCTTGGAGTGCGGTTCCTGTGCGTGGAACTACACCCGAT
GAAGATAAATGGGACCTACATGAACTCCTTCTTGTTCAATTTGATTCTCA
TCCTTCTGTGTACTTTTCCTGTCGTCGAATTCTCCACGTCTGCCTTTGCC
GGCTACGCACGTTTCAGCAACATATACCATTTTTTCGGCGTACAAATCAG
GTACCTTATATTTTTCTCCATTTTTTACACAAACAACATCTTTGTGTACA
TGCTTCTGGGCTTCTGTTTCTTGGCGACCCTCTACTTCATTAAAACCCCC
CGGGACAAACCAGTCGAGGCCGAGGAGGTCAAACAAAGCCTGCGAAGGAG
GAGAAAAATATCCAGGTAG

protein sequence of rna3397

>rna3397-protein ID=rna3397-protein|Name=rna3397|organism=Nannochloropsis gaditana|type=polypeptide|length=664bp
MRCSWALVLGLMVLDATAFFIGTAPNFQFSTWPSTWKQDVGSHPLSAKGI
KTRLNPLRMGPLNAANLKKKQKGGKKASKGGGGKGKGGGGGGGNSVIDTN
KREYIYQMHRMSKTFGKGDGSKPVLKDISLSFYPGVKIGVLGGNGAGKST
LIKIMAGVDDDFNGEARPARWAKLGYLPQEPELEGPTVGDELEKAVAETR
GLLKEYETVSASLGKPDLTSNEQETLNLRMDELQSEIEANNGWELDRMLE
RAMDALRCPPQEAIVANLSGGERRRVALCRLLLTRPDLLLLDEPTNHLDA
ESVAWLEDFLHDYKGTVVAITHDRYFLDNVAGWILELDRGEGIPFEGNYS
GWLERKAKRLEQEAREDNKRAKALSRELEWMRMSPKARQTKAKARITSYE
QMVQADEEARENSRSGPTNIYIPPGPPLAAKVVEAENLGKWYGDRLLWDK
VSFSLPRGGVVGVIGANGVGKSTLFKLIAGLEAPDQGALSLGDTVKVMYV
DQNREAVADPTKTVYDTVADGAEQIELGKRVVNSRAYLGWFNFKGADQQK
PVGVLSGGERNRLCLAQTLKQGGNLLLLDEPTNDLDVDTLRALEDAIEAY
AGCAVIISHDRYFLDRVATHILAFEDDGNVVWFEGDFSEYQRDLQARNGG
VEPKRPKFRPLPTV

mRNA from alignment at CM002461.1:310235..312615+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna3397 ID=rna3397|Name=rna3397|organism=Nannochloropsis gaditana|type=mRNA|length=2381bp|location=Sequence derived from alignment at CM002461.1:310235..312615+ (Nannochloropsis gaditana)
ACCCCTTCCATCATCGACGAGCATTTTTATATTCCAATTGCCAAGCCTTC
ATTTGACCGCCCTCATCATATGACCGCATTATATTCAGGAATATGCGTTG
TTCGTGGGCTCTTGTTTTAGGCCTCATGGTCTTGGACGCGACGGCTTTTT
TTATCGGCACGGCGCCCAACTTTCAGTTTTCCACATGGCCGTCAACCTGG
AAGCAGGACGTGGGAAGCCACCCCTTGTCTGCAAAGGTACGTTGAGATGC
AGCGTAATGAAGCATGTGAAAGCTTACTAGGCATGCTCCATTACCTTGCG
CCCCATCGTCGAAGGTGTCTGGTCGAACAAACTCAGTTGCCTTCAATGTA
GGAGAGAGCCACTTCAAGGCTTCGCTCTCACGTAACCCTTTTTACCTTCT
CTAGGGTATCAAGACACGCCTTAATCCCTTAAGAATGGGCCCTTTGAATG
CGGCCAATctgaaaaagaagcaaaaagGTGGCAAGAAAGCTAGcaaaggc
ggtggcggcaaaggaaaaggcggtggaggtggtggtggcaacAGTGTGAT
AGACACCAATAAGCGCGAGTACATTTATCAGATGCATCGAATGAGCAAAA
CATTTGGTAAAGGTGATGGATCCAAGCCTGTGTTGAAAGATATATCCCTG
TCTTTCTACCCGGGGGTCAAAATTGGAGTGTTGGGCGGGAACGGCGCAGG
GAAATCGACACTCATTAAGATCATGGCTGGTGTGGACGACGATTTCAATG
GAGAGGCACGGCCCGCTCGCTGGGCAAAGCTAGGATACCTTCCCCAAGAA
CCGGAACTGGAAGGACCTACTGTGGGCGACGAGCTGGAAAAGGCAGTGGC
AGAGACGAGAGGACTTTTGAAGGAGTATGAGACTGTCAGCGCATCCCTGG
GCAAGCCAGATCTGACGTCGAATGAGCAGGAGACACTTAACTTAAGGATG
GACGAGCTTCAAAGCGAGATCGAGGCGAACAATGGATGGGAATTGGACCG
GATGTTGGAGAGAGCCATGGACGCGCTGCGGTGCCCGCCTCAAGAAGCCA
TAGTGGCCAATTTATCCGGGGGGGAACGGCGCCGGGTAGCTTTATGCCGG
CTGCTGCTGACCAGAcccgaccttctccttctggaCGAACCTACGAACCA
CCTGGACGCGGAATCAGTGGCCTGGCTGGAGGATTTCCTGCACGACTACA
AGGGCACCGTGGTGGCCATCACGCACGATCGGTACTTTCTGGACAATGTG
GCCGGGTGGATCCTGGAGCTGGACCGCGGGGAAGGGATTCCTTTCGAAGG
GAACTACTCGGGCTGGCTGGAAcggaaggcgaagaggctggagcaggagg
cgagggaggacaacAAGCGCGCCAAGGCGCTGTCGAGGGAGTTGGAATGG
ATGCGCATGTCCCCCAAGGCCCGCCAGACCAAGGCGAAAGCCCGCATTAC
CAGCTACGAGCAGATGGTGCAGGCCGATGAGGAAGCACGGGAGAACTCCC
GGTCGGGCCCTACCAACATCTACAtccccccgggcccgcccctggcggcc
aaggtggtggaggctgaGAACCTGGGTAAGTGGTACGGGGACCGACTCTT
GTGGGACAaggtctctttctccttgccgcggggaggggtggtgggcgtGA
TCGGCGCGAACGGCGTGGGGAAATCGACCCTTTTCAAGCTGATCGCGGGC
TTGGAGGCGCCGGACCAAGGCGCGTTGAGCCTGGGCGATACCGTGAAGGT
CATGTACGTGGACCAGAACcgagaggcggtggcggaccCGACCAAGACAG
TGTACGACACGGTCGCGGATGGGGCGGAGCAGATCGAATTGGGGAAACGG
GTGGTGAACAGTCGGGCGTATTTGGGTTGGTTTAACTTCAAAGGAGCGGA
TCAACAGAAACCCGTCGGTGTTTtgtcggggggggagcgaaACCGTCTGT
GTCTGGCGCAAACCttgaagcaaggaggaaatctcctcctcttggacGAG
CCCACCAATGATTTGGATGTCGATACCttgcgggccttggaggacgcgat
cgaaGCCTACGCAGGGTGTGCCGTCATCATTTCCCATGACCGGTATTTCC
TGGATCGGGTTGCCACCCACATCCTGGCCTTCGAGGATGACGGGAACGTG
GTCTGGTTCGAGGGCGATTTTAGCGAGTATCAGAGAGATTTGCAGGCCAG
AAACGGTGGCGTGGAGCCCAAAAGGCCCAAATTTCGGCCCTTGCCTACCG
TCTAGACGTGAATacgggggcgaaggggagggggaaatggggTTGACAAG
AGAGGAGTGAAGAAACGAGGTGGGGGTAGGGTGAGGTGGAATAAGTCAAA
AAATTAGGAGGCTCAAGATATGAAGCAAATA

Coding sequence (CDS) from alignment at CM002461.1:310235..312615+

>rna3397 ID=rna3397|Name=rna3397|organism=Nannochloropsis gaditana|type=CDS|length=3990bp|location=Sequence derived from alignment at CM002461.1:310235..312615+ (Nannochloropsis gaditana)
ATGCGTTGTTCGTGGGCTCTTGTTTTAGGCCTCATGGTCTTGGACGCGAC
GGCTTTTTTTATCGGCACGGCGCCCAACTTTCAGTTTTCCACATGGCCGT
CAACCTGGAAGCAGGACGTGGGAAGCCACCCCTTGTCTGCAAAGGGTATC
AAGACACGCCTTAATCCCTTAAGAATGGGCCCTTTGAATGCGGCCAATct
gaaaaagaagcaaaaagGTGGCAAGAAAGCTAGcaaaggcggtggcggca
aaggaaaaggcggtggaggtggtggtggcaacAGTGTGATAGACACCAAT
AAGCGCGAGTACATTTATCAGATGCATCGAATGAGCAAAACATTTGGTAA
AGGTGATGGATCCAAGCCTGTGTTGAAAGATATATCCCTGTCTTTCTACC
CGGGGGTCAAAATTGGAGTGTTGGGCGGGAACGGCGCAGGGAAATCGACA
CTCATTAAGATCATGGCTGGTGTGGACGACGATTTCAATGGAGAGGCACG
GCCCGCTCGCTGGGCAAAGCTAGGATACCTTCCCCAAGAACCGGAACTGG
AAGGACCTACTGTGGGCGACGAGCTGGAAAAGGCAGTGGCAGAGACGAGA
GGACTTTTGAAGGAGTATGAGACTGTCAGCGCATCCCTGGGCAAGCCAGA
TCTGACGTCGAATGAGCAGGAGACACTTAACTTAAGGATGGACGAGCTTC
AAAGCGAGATCGAGGCGAACAATGGATGGGAATTGGACCGGATGTTGGAG
AGAGCCATGGACGCGCTGCGGTGCCCGCCTCAAGAAGCCATAGTGGCCAA
TTTATCCGGGGGGGAACGGCGCCGGGTAGCTTTATGCCGGCTGCTGCTGA
CCAGAcccgaccttctccttctggaCGAACCTACGAACCACCTGGACGCG
GAATCAGTGGCCTGGCTGGAGGATTTCCTGCACGACTACAAGGGCACCGT
GGTGGCCATCACGCACGATCGGTACTTTCTGGACAATGTGGCCGGGTGGA
TCCTGGAGCTGGACCGCGGGGAAGGGATTCCTTTCGAAGGGAACTACTCG
GGCTGGCTGGAAcggaaggcgaagaggctggagcaggaggcgagggagga
caacAAGCGCGCCAAGGCGCTGTCGAGGGAGTTGGAATGGATGCGCATGT
CCCCCAAGGCCCGCCAGACCAAGGCGAAAGCCCGCATTACCAGCTACGAG
CAGATGGTGCAGGCCGATGAGGAAGCACGGGAGAACTCCCGGTCGGGCCC
TACCAACATCTACAtccccccgggcccgcccctggcggccaaggtggtgg
aggctgaGAACCTGGGTAAGTGGTACGGGGACCGACTCTTGTGGGACAag
gtctctttctccttgccgcggggaggggtggtgggcgtGATCGGCGCGAA
CGGCGTGGGGAAATCGACCCTTTTCAAGCTGATCGCGGGCTTGGAGGCGC
CGGACCAAGGCGCGTTGAGCCTGGGCGATACCGTGAAGGTCATGTACGTG
GACCAGAACcgagaggcggtggcggaccCGACCAAGACAGTGTACGACAC
GGTCGCGGATGGGGCGGAGCAGATCGAATTGGGGAAACGGGTGGTGAACA
GTCGGGCGTATTTGGGTTGGTTTAACTTCAAAGGAGCGGATCAACAGAAA
CCCGTCGGTGTTTtgtcggggggggagcgaaACCGTCTGTGTCTGGCGCA
AACCttgaagcaaggaggaaatctcctcctcttggacGAGCCCACCAATG
ATTTGGATGTCGATACCttgcgggccttggaggacgcgatcgaaGCCTAC
GCAGGGTGTGCCGTCATCATTTCCCATGACCGGTATTTCCTGGATCGGGT
TGCCACCCACATCCTGGCCTTCGAGGATGACGGGAACGTGGTCTGGTTCG
AGGGCGATTTTAGCGAGTATCAGAGAGATTTGCAGGCCAGAAACGGTGGC
GTGGAGCCCAAAAGGCCCAAATTTCGGCCCTTGCCTACCGTCTAGATGCG
TTGTTCGTGGGCTCTTGTTTTAGGCCTCATGGTCTTGGACGCGACGGCTT
TTTTTATCGGCACGGCGCCCAACTTTCAGTTTTCCACATGGCCGTCAACC
TGGAAGCAGGACGTGGGAAGCCACCCCTTGTCTGCAAAGGGTATCAAGAC
ACGCCTTAATCCCTTAAGAATGGGCCCTTTGAATGCGGCCAATctgaaaa
agaagcaaaaagGTGGCAAGAAAGCTAGcaaaggcggtggcggcaaagga
aaaggcggtggaggtggtggtggcaacAGTGTGATAGACACCAATAAGCG
CGAGTACATTTATCAGATGCATCGAATGAGCAAAACATTTGGTAAAGGTG
ATGGATCCAAGCCTGTGTTGAAAGATATATCCCTGTCTTTCTACCCGGGG
GTCAAAATTGGAGTGTTGGGCGGGAACGGCGCAGGGAAATCGACACTCAT
TAAGATCATGGCTGGTGTGGACGACGATTTCAATGGAGAGGCACGGCCCG
CTCGCTGGGCAAAGCTAGGATACCTTCCCCAAGAACCGGAACTGGAAGGA
CCTACTGTGGGCGACGAGCTGGAAAAGGCAGTGGCAGAGACGAGAGGACT
TTTGAAGGAGTATGAGACTGTCAGCGCATCCCTGGGCAAGCCAGATCTGA
CGTCGAATGAGCAGGAGACACTTAACTTAAGGATGGACGAGCTTCAAAGC
GAGATCGAGGCGAACAATGGATGGGAATTGGACCGGATGTTGGAGAGAGC
CATGGACGCGCTGCGGTGCCCGCCTCAAGAAGCCATAGTGGCCAATTTAT
CCGGGGGGGAACGGCGCCGGGTAGCTTTATGCCGGCTGCTGCTGACCAGA
cccgaccttctccttctggaCGAACCTACGAACCACCTGGACGCGGAATC
AGTGGCCTGGCTGGAGGATTTCCTGCACGACTACAAGGGCACCGTGGTGG
CCATCACGCACGATCGGTACTTTCTGGACAATGTGGCCGGGTGGATCCTG
GAGCTGGACCGCGGGGAAGGGATTCCTTTCGAAGGGAACTACTCGGGCTG
GCTGGAAcggaaggcgaagaggctggagcaggaggcgagggaggacaacA
AGCGCGCCAAGGCGCTGTCGAGGGAGTTGGAATGGATGCGCATGTCCCCC
AAGGCCCGCCAGACCAAGGCGAAAGCCCGCATTACCAGCTACGAGCAGAT
GGTGCAGGCCGATGAGGAAGCACGGGAGAACTCCCGGTCGGGCCCTACCA
ACATCTACAtccccccgggcccgcccctggcggccaaggtggtggaggct
gaGAACCTGGGTAAGTGGTACGGGGACCGACTCTTGTGGGACAaggtctc
tttctccttgccgcggggaggggtggtgggcgtGATCGGCGCGAACGGCG
TGGGGAAATCGACCCTTTTCAAGCTGATCGCGGGCTTGGAGGCGCCGGAC
CAAGGCGCGTTGAGCCTGGGCGATACCGTGAAGGTCATGTACGTGGACCA
GAACcgagaggcggtggcggaccCGACCAAGACAGTGTACGACACGGTCG
CGGATGGGGCGGAGCAGATCGAATTGGGGAAACGGGTGGTGAACAGTCGG
GCGTATTTGGGTTGGTTTAACTTCAAAGGAGCGGATCAACAGAAACCCGT
CGGTGTTTtgtcggggggggagcgaaACCGTCTGTGTCTGGCGCAAACCt
tgaagcaaggaggaaatctcctcctcttggacGAGCCCACCAATGATTTG
GATGTCGATACCttgcgggccttggaggacgcgatcgaaGCCTACGCAGG
GTGTGCCGTCATCATTTCCCATGACCGGTATTTCCTGGATCGGGTTGCCA
CCCACATCCTGGCCTTCGAGGATGACGGGAACGTGGTCTGGTTCGAGGGC
GATTTTAGCGAGTATCAGAGAGATTTGCAGGCCAGAAACGGTGGCGTGGA
GCCCAAAAGGCCCAAATTTCGGCCCTTGCCTACCGTCTAG

Synonyms

Publications