rna3394, rna3394 (mRNA) Nannochloropsis gaditana

Overview
Namerna3394
Unique Namerna3394
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length351
Alignment locationCM002461.1:300781..301805 -

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Properties
Property NameValue
ProductPost-SET domain protein
Orig transcript idgnl|cribi|Naga_100080g13.2853.mrna
Orig protein idgnl|cribi|Naga_100080g13.2853
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002461.1supercontigCM002461.1:300781..301805 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100080g13gene3269Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna3394rna3394-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM27289.1cds3385Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna3394 ID=rna3394|Name=rna3394|organism=Nannochloropsis gaditana|type=mRNA|length=351bp
ATGAGCAACGAATATTGCGGCAATTTCTGGAGAGAGGAACAACAAGGTTT
GAGGGAAACACAAATAATTGTGCAGCTGAGTATCCTATTTCGCGTCGCAC
CATGCCAATACAGTTGTTTCAGTGTAAAAAATGAAAGTTTTAGCGCGTCT
TTTCAGAGCACACAACGGGAGGAAATCGTAAGAGAGGATACAACAAGGCC
ACGAAGTGTGAGAAGGGCATTTGAATGCCGACTGGATGCGAGAAGGAAAA
AGATACCTCTGGCGAACCGACCATTAAATGAATGTCTGATACTCCTTCTC
CCCTTGCCCTGTGCGACTGTGTCTTCGACGCATAATTTTCCTCAGTCCTA
A
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protein sequence of rna3394

>rna3394-protein ID=rna3394-protein|Name=rna3394|organism=Nannochloropsis gaditana|type=polypeptide|length=327bp
MDATDTTEGNSLVGPRGHYGAVELGHHEHLHDEADDTASINIFRHEQPRN
VRTARGKVGIVVAVVIAVVLAALAVSAPSRTAKMPPPLKTPGPEASAEDP
FLAATPGNDVAGPAPKDPVGWQDMVPKNVLNKTHGHTDSASHPPAEANHT
QAHDHHGHNSTSSTHSKGNSTSSQPMPAKKGDVARNCSQEECTDYSGCDP
ASFPFVCVEGFAKGGCAKTQKAWENPGCGDFCTLAHCVEHAPGRVWSPAP
LCLCGGRECRGLLGRGRLLAPRYFQRDLQEMLRPQDLRDALKPRAGKSAG
RHQKLSVSVRNLLQAESRKFPGAFTTT
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mRNA from alignment at CM002461.1:300781..301805-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna3394 ID=rna3394|Name=rna3394|organism=Nannochloropsis gaditana|type=mRNA|length=1025bp|location=Sequence derived from alignment at CM002461.1:300781..301805- (Nannochloropsis gaditana)
ATGGATGCTACGGACACAACAGAGGGAAACTCCCTGGTGGGGCCGCGTGG
CCATTACGGGGCAGTTGAACTCGGTCATCATGAGCACCTGCACGATGAGG
CTGATGATACCGCGTCCATCAATATTTTCCGTCATGAGCAGCCTCGGAAT
GTGCGCACAGCCCGCGGCAAAGTCGGTATCGTGGTAGCAGTTGTGATTGC
AGTGGTCTTGGCGGCCTTGGCTGTTTCTGCTCCATCGCGAACGGCAAAGA
TGCCTCCCCCCCTCAAGACGCCGGGCCCTGAGGCTTCCGCTGAGGACCCT
TTCCTCGCGGCGACCCCCGGGAACGACGTGGCTGGTCCTGCTCCCAAAGA
CCCGGTGGGGTGGCAGGACATGGTGCCCAAGAACGTGCTGAACAAGACAC
ACGGTCACACGGACTCTGCCTCCCACCCACCGGCCGAAGCCAACCACACC
CAGGCCCACGACCATCACGGCCACAATAGCACGAGCAGCACGCACAGCAA
GGGCAACAGCACCAGTAGCCAACCCATGCCGGCCAAAAAGGGAGACGTCG
CGCGCAATTGTAGCCAGGAGGAATGTACGGATTACAGCGGCTGTGACCCT
GCTTCCTTTCCATTCGTGTGCGTCGAAGGCTTTGCCAAGGGCGGATGTGC
CAAAACCCAGAAAGCATGGGAGAACCCCGGATGCGGCGATTTTTGCACGC
TCGCCCACTGCGTGGAACATGCCCCGGGGTGCGGGGACTGCTCGGAAAGC
GACTGCCACCGGCTCCAAGTCGTGTGTGGAGTCCAGCGCCATTATGCCTG
TGTGGAGGGCGCGAGTGCCGGGGGCTGCTCGGACGAGGCCGACTACTGGC
CCCAAGGTATTTTCAACGGGATCTGCAAGAAATGCTGCGACCTCAAGACC
TGCGGGATGCATTGAAGCCGCGCGCCGGAAAGTCGGCAGGGCGACACCAG
AAATTGAGCGTTTCGGTGCGTAATTTATTACAGGCGGAATCTAGAAAATT
TCCTGGGGCCTTTACTACAACATGA
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Coding sequence (CDS) from alignment at CM002461.1:300781..301805-

>rna3394 ID=rna3394|Name=rna3394|organism=Nannochloropsis gaditana|type=CDS|length=1968bp|location=Sequence derived from alignment at CM002461.1:300781..301805- (Nannochloropsis gaditana)
TCGTGTGTGGAGTCCAGCGCCATTATGCCTGTGTGGAGGGCGCGAGTGCC
GGGGGCTGCTCGGACGAGGCCGACTACTGGCCCCAAGGTATTTTCAACGG
GATCTGCAAGAAATGCTGCGACCTCAAGACCTGCGGGATGCATTGAAGCC
GCGCGCCGGAAAGTCGGCAGGGCGACACCAGAAATTGAGCGTTTCGGTGC
GTAATTTATTACAGGCGGAATCTAGAAAATTTCCTGGGGCCTTTACTACA
ACATGAATGGATGCTACGGACACAACAGAGGGAAACTCCCTGGTGGGGCC
GCGTGGCCATTACGGGGCAGTTGAACTCGGTCATCATGAGCACCTGCACG
ATGAGGCTGATGATACCGCGTCCATCAATATTTTCCGTCATGAGCAGCCT
CGGAATGTGCGCACAGCCCGCGGCAAAGTCGGTATCGTGGTAGCAGTTGT
GATTGCAGTGGTCTTGGCGGCCTTGGCTGTTTCTGCTCCATCGCGAACGG
CAAAGATGCCTCCCCCCCTCAAGACGCCGGGCCCTGAGGCTTCCGCTGAG
GACCCTTTCCTCGCGGCGACCCCCGGGAACGACGTGGCTGGTCCTGCTCC
CAAAGACCCGGTGGGGTGGCAGGACATGGTGCCCAAGAACGTGCTGAACA
AGACACACGGTCACACGGACTCTGCCTCCCACCCACCGGCCGAAGCCAAC
CACACCCAGGCCCACGACCATCACGGCCACAATAGCACGAGCAGCACGCA
CAGCAAGGGCAACAGCACCAGTAGCCAACCCATGCCGGCCAAAAAGGGAG
ACGTCGCGCGCAATTGTAGCCAGGAGGAATGTACGGATTACAGCGGCTGT
GACCCTGCTTCCTTTCCATTCGTGTGCGTCGAAGGCTTTGCCAAGGGCGG
ATGTGCCAAAACCCAGAAAGCATGGGAGAACCCCGGATGCGGCGATTTTT
GCACGCTCGCCCACTGCGTGGAACATGCCCCGGGTCGTGTGTGGAGTCCA
GCGCCATTATGCCTGTGTGGAGGGCGCGAGTGCCGGGGGCTGCTCGGACG
AGGCCGACTACTGGCCCCAAGGTATTTTCAACGGGATCTGCAAGAAATGC
TGCGACCTCAAGACCTGCGGGATGCATTGAAGCCGCGCGCCGGAAAGTCG
GCAGGGCGACACCAGAAATTGAGCGTTTCGGTGCGTAATTTATTACAGGC
GGAATCTAGAAAATTTCCTGGGGCCTTTACTACAACATGAATGGATGCTA
CGGACACAACAGAGGGAAACTCCCTGGTGGGGCCGCGTGGCCATTACGGG
GCAGTTGAACTCGGTCATCATGAGCACCTGCACGATGAGGCTGATGATAC
CGCGTCCATCAATATTTTCCGTCATGAGCAGCCTCGGAATGTGCGCACAG
CCCGCGGCAAAGTCGGTATCGTGGTAGCAGTTGTGATTGCAGTGGTCTTG
GCGGCCTTGGCTGTTTCTGCTCCATCGCGAACGGCAAAGATGCCTCCCCC
CCTCAAGACGCCGGGCCCTGAGGCTTCCGCTGAGGACCCTTTCCTCGCGG
CGACCCCCGGGAACGACGTGGCTGGTCCTGCTCCCAAAGACCCGGTGGGG
TGGCAGGACATGGTGCCCAAGAACGTGCTGAACAAGACACACGGTCACAC
GGACTCTGCCTCCCACCCACCGGCCGAAGCCAACCACACCCAGGCCCACG
ACCATCACGGCCACAATAGCACGAGCAGCACGCACAGCAAGGGCAACAGC
ACCAGTAGCCAACCCATGCCGGCCAAAAAGGGAGACGTCGCGCGCAATTG
TAGCCAGGAGGAATGTACGGATTACAGCGGCTGTGACCCTGCTTCCTTTC
CATTCGTGTGCGTCGAAGGCTTTGCCAAGGGCGGATGTGCCAAAACCCAG
AAAGCATGGGAGAACCCCGGATGCGGCGATTTTTGCACGCTCGCCCACTG
CGTGGAACATGCCCCGGG
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Synonyms
Publications