EWM27289.1, cds3385 (CDS) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	EWM27289.1
Unique Name	cds3385
Type	CDS
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Alignment location	CM002461.1:301078..301805 -
Alignment location	CM002461.1:300781..301036 -

Link to JBrowse

Properties


Property Name	Value
Protein id	EWM27289.1
Product	Post-SET domain protein
Orig transcript id	gnl\|cribi\|Naga_100080g13.2853.mrna
Gbkey	CDS

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002461.1	supercontig	CM002461.1:301078..301805 -
CM002461.1	supercontig	CM002461.1:300781..301036 -

Analyses

This CDS is derived from or has results from the following analyses


Analysis Name	Date Performed
GO annotation for N. gaditana B31	2020-04-08
BLAST analysis for N. gaditana B-31	2020-04-07
InterPro analysis for N. gaditana B-31	2020-04-06
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

The following terms have been associated with this CDS:

Vocabulary: **Cellular Component**
Term	Definition
GO:0016020	membrane

Vocabulary: **INTERPRO**
Term	Definition
IPR003616	Post-SET_dom

Homology

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BLAST of EWM27289.1 vs. NCBI_GenBank
Match: gi|585109471|gb|EWM27289.1| (Post-SET domain protein [Nannochloropsis gaditana])

HSP 1 Score: 676.011 bits (1743), Expect = 0.000e+0
Identity = 327/327 (100.00%), Postives = 327/327 (100.00%), Query Frame = 0

Query:    1 MDATDTTEGNSLVGPRGHYGAVELGHHEHLHDEADDTASINIFRHEQPRNVRTARGKVGIVVAVVIAVVLAALAVSAPSRTAKMPPPLKTPGPEASAEDPFLAATPGNDVAGPAPKDPVGWQDMVPKNVLNKTHGHTDSASHPPAEANHTQAHDHHGHNSTSSTHSKGNSTSSQPMPAKKGDVARNCSQEECTDYSGCDPASFPFVCVEGFAKGGCAKTQKAWENPGCGDFCTLAHCVEHAPGRVWSPAPLCLCGGRECRGLLGRGRLLAPRYFQRDLQEMLRPQDLRDALKPRAGKSAGRHQKLSVSVRNLLQAESRKFPGAFTTT 327
            MDATDTTEGNSLVGPRGHYGAVELGHHEHLHDEADDTASINIFRHEQPRNVRTARGKVGIVVAVVIAVVLAALAVSAPSRTAKMPPPLKTPGPEASAEDPFLAATPGNDVAGPAPKDPVGWQDMVPKNVLNKTHGHTDSASHPPAEANHTQAHDHHGHNSTSSTHSKGNSTSSQPMPAKKGDVARNCSQEECTDYSGCDPASFPFVCVEGFAKGGCAKTQKAWENPGCGDFCTLAHCVEHAPGRVWSPAPLCLCGGRECRGLLGRGRLLAPRYFQRDLQEMLRPQDLRDALKPRAGKSAGRHQKLSVSVRNLLQAESRKFPGAFTTT
Sbjct:    1 MDATDTTEGNSLVGPRGHYGAVELGHHEHLHDEADDTASINIFRHEQPRNVRTARGKVGIVVAVVIAVVLAALAVSAPSRTAKMPPPLKTPGPEASAEDPFLAATPGNDVAGPAPKDPVGWQDMVPKNVLNKTHGHTDSASHPPAEANHTQAHDHHGHNSTSSTHSKGNSTSSQPMPAKKGDVARNCSQEECTDYSGCDPASFPFVCVEGFAKGGCAKTQKAWENPGCGDFCTLAHCVEHAPGRVWSPAPLCLCGGRECRGLLGRGRLLAPRYFQRDLQEMLRPQDLRDALKPRAGKSAGRHQKLSVSVRNLLQAESRKFPGAFTTT 327

The following BLAST results are available for this feature:

BLAST of EWM27289.1 vs. NCBI_GenBank

BLAST of EWM27289.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 1


Match Name	E-value	Identity	Description
gi\|585109471\|gb\|EWM27289.1\|	0.000e+0	100.00	Post-SET domain protein [Nannochloropsis gaditana]	[more]

Relationships

This CDS is a part of the following mRNA feature(s):


Feature Name	Unique Name	Species	Type
rna3394	rna3394	Nannochloropsis gaditana (N. gaditana B-31)	mRNA

Sequences

Synonyms

Publications