rna3392, rna3392 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna3392
Unique Name	rna3392
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1419
Alignment location	CM002461.1:297623..299458 +

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100080g10.2843.mrna
Orig protein id	gnl\|cribi\|Naga_100080g10.2843
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002461.1	supercontig	CM002461.1:297623..299458 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100080g10	gene3267	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna3392	rna3392-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM27279.1	cds3383	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002461.1:297623..299458+
coding sequence from alignment at CM002461.1:297623..299458+

mRNA sequence

>rna3392 ID=rna3392|Name=rna3392|organism=Nannochloropsis gaditana|type=mRNA|length=1419bp
GATTTTGCGTCTCCTATTAAGAATTTGATAATATGCCACCTAAGGCGAAG
GAAGAGAAGAAAGCAGTTGTGCGATTCGGTCGTGTCCGCAGCAACCTAAA
AATGGGATTGGTGGGATTGCCAAACGTGGGGAAGTCGAGCCTTTTTAATT
TATTGTGCAATGCCTCCGCGGCAGCCAGCAATTTCGCTTTCTGCACCATC
GACCCCAACGAGTCACGTTGTGTCGTGCCTGACCAGCGCTTTGACTACTT
GTGCGACTTGCACAAACCTGCTAGCAAGATCCCTGCCTACCTGCATGTGA
CAGACATTGCTGGGCTCATCAAAGGTGCCAGCGAGGGGGCGGGCCTGGGG
AACGCCTTCCTGAGCCACATCGCCGCTGTCGACGGGATCTTCCACCTGGT
GCGGGGCTTCGAGAACGACGAGATCATGCATGTGGACGACTCAGTCGACC
CCGTCCGTGATTTGGAGACCATCACCAGCGAGCTGTGCATGAAGGATTTG
GACACGATCGACCGGGCCATCGAGAACGAGAAAAAGGAGCACAAACGCAC
CAAGATGACCAAGGAGATGGAGGCCTACATGGCGCTGTTGGAGAAAATCA
AGGCCATGCTGGAGGCCAATCAGCCGGTCAGGACCGGGACTTGGACGGCG
GCGGAGGTAGAGAGTGTGAACGAGCGGTTGAAAGAGCTCATCACCACCAA
GCCGATGATCTATTTGGTCAACTTGAGCATGGAGCAGTTCGTCAAGAAGC
GGAGCCGGTGTCTCCCCTTGGTCCAAAAGTGGGTGGACGAGCACGGCGGG
GGAACGATCATTCCCTTCTCGGTAGAGTTCGAGCAGAAACGATGGGATTT
GCGGGAAGACCCTGCGGCCTTGGAGACCTTTATGGCGGACGCGGAGGGGG
CCAAGAGCGCCCTGCCGCGGATGGTAAAAATCGGGTACAAGCAGCTCCAT
TTGATCTACTTCTTCACGGCCGGGGAGCAGGAGGTCCGGTGCTGGACGAT
CCAAGAGGGCAATTTGGCGCCCCAAGCCGCCGGGGCCATCCACACAGACT
TTGAAAGGGGGTTCATTAAAGCGGAAGTGGTGTCCTACGAGGACTACAAG
GCTTACAACAACGGGAAAGCGAGCATGGTGGACGTGAAGGCGGCCGGCAA
GTATCGGATCGAAGGGAAGTCCTACGTGGTGCAAGACGGGGATATCATCC
ATTTTCAATTCAACGTGACGGCGGACAAGAAGAAGAAGTAAAAGGGGCCA
GGCAGATCGTCGGTCTGGGGGCTGAAAGAGGGGTGGAGGGGTCAGAGAGC
AAGGGGGGAGGTCCCAGTAGTAGGGAGTGGAGAGCGGGATGAAGTTCGTG
GAAGGGGGGGGACTGCGCAACGAGGAGACGGAACGAAAATGAAAAGAAAT
GGACCAGGAATGCGGGAGC

protein sequence of rna3392

>rna3392-protein ID=rna3392-protein|Name=rna3392|organism=Nannochloropsis gaditana|type=polypeptide|length=439bp
MYPRWAHGASWEEEGASPPPFSNPMTPLLAYKLTRPHVIHTGQEQGAQFI
FSLCTLRAVCRRSRRRGLKMRSQRTRRGGRKGHAHQPLSKTPRHGRFHEA
TRRIEGGGSNAASLGLLCSLVFVSSVLCLLSLLRAADAARFIRPFGEPPP
PPPPMGARYGHGIFDRRHTPAKGGPRNRAEEGGDREGASGGGIGGNVFWK
QWHFPVRTRGRNGVDDEDALGSAGTGDFDPLFDGNGLGGREGARAEAAAA
EREFESSDRRPWTDLIPRFRVKVEPLTTLKLRKRFYPFKTVIELGADYNT
QIGVWQFKSSWEDRIIGGRLTVKGRELQFSKTWLVTLGDQDDIATRLKFR
AGIDTGTWRSYARLGFRTERIQPLNLKDGVTLRRRLPLDGTEGHAKLEVR
ANLCLPEPEIEYSTDKKRLIMGTGDILLSIDELNLCLEY

mRNA from alignment at CM002461.1:297623..299458+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna3392 ID=rna3392|Name=rna3392|organism=Nannochloropsis gaditana|type=mRNA|length=1836bp|location=Sequence derived from alignment at CM002461.1:297623..299458+ (Nannochloropsis gaditana)
ATGTACCCGCGATGGGCACATGGTGCctcctgggaggaagagggagcgag
ccctccccccttttctaATCCGATGACACCACTCCTCGCTTATAAATTGA
CACGACCACATGTCATTCACACAGGGCAAGAGCAGGGTGCGCAATTTATT
TTCTCATTGTGTACCTTGAGGGCAGTCTGTCGTCGGTCGCGGAGGCGTGG
ATTAAAAATGCGCTCCCAGCGAacgcgaagaggaggacgaaagggCCACG
CACACCAGCCCTTGTCAAAGACACCAAGACATGGTCGCTTCCACGAAGCC
ACGCGAAGAatagaaggaggtggaagcaACGCGGCATCTCTTGGTCTGCT
ATGCTCTTTGGTATTCGTCAGCTCGGTTCTGTGCCTCCTGTCTTTGCTTC
GTGCCGCTGATGCCGCACGATTCATTCGGCCTTTCGGTgaaccgcctccc
ccgccaccaccaatGGGGGCTCGGTAAGTCTTTCAATGGATAGATTGGGC
GAGAAAAATGAGACGTTGGAGGTTTGGATCGCTTGGAATGATTGGAACGC
GACATGTTTGATCTCTCTCtctgaaggggggaaggagcggccGGTGAGGG
AAACGTGGCATGTGGCGGTTGCGAGAAAAGGATGGTGTGCGTTGGCCGGA
TACCATCCTCGGTGGTCAAACGTTGTTCGTTGTTCATTTTCATTTTCATG
CGTTCATCCCATCTCTCTGTTCCCCTGCCCGGGCTGCCACTCACAGGTAC
GGTCACGGTATTTTCGACCGCCGGCATACCCCAGCGAAGGGCGGGCCCAG
GAACagggccgaggagggaggcgaccgggagggagcgagtgGGGGAGGTA
TCGGTGGCAACGTGTTTTGGAAGCAATGGCATTTCCCCGTCcgaacgagg
gggaggaacggggtgGACGATGAGGACGCCCTGGGGTCCGCGGGGACGGG
CGACTTCGATCCGCTCTTCGACGGAAATGGGttagggggaagggaaggcg
caCGTGCAGAAGCCGCagcggcagagagggagtTCGAGTCGTCTGACCGC
CGGCCTTGGACGGATTTAATTCCAAGGTTTCGGGTCAAGGTGGAGCCGTT
GACCACGTTGAAGTTGCGGAAACGCTTTTACCCGTTCAAAACCGTGATCG
AGCTGGGCGCGGACTACAACACACAGGTACGTCGCTGGATTTGCtaagag
ggagacgtgggGGAGAACGTGTTTCCTGGCACTGCGACTCCGGGTAAAGT
GAGGTGTTAATCCGCTCCGCTGTTCCCATCACTTCAGATTGGTGTGTGGC
AGTTCAAATCCTCCTGGGAGGACCGGATCATTGGAGGGCGACTGACTGTG
AAAGGTCGCGAGCTCCAGTTTTCGAAGACCTGGCTGGTTACTTTGGGGGA
CCAAGACGACATCGCCACGCGCTTGAAGTTCCGCGCCGGTATTGACACGG
GCACGTGGCGCTCCTACGCCCGCTTGGGATTTAGGACTGAGAGGTAGGTT
TGAATTCAGGTGGGGTAGTCGAGGTTCACGTTTGAAAGCAGGGATATAAA
AGATGGAGCGATGGGAAGAAAGACACTCGTGCGCGCTGTCTAAccttgct
cccccccccctgttcCGTGTTACAGAATACAACCTCTGAATTTGAAGGAC
GGAGTGACCCTCCGCcggcgccttcccctcgatGGCACGGAGGGCCACGC
CAAGTTGGAAGTGCGGGCAAATCTGTGTTTACCGGAGCCTGAGATAGAAT
ATTCGACAGACAAGAAACGGCTCATTATGGGCACCGGCGACATCCTGCTG
AGCATCGACGAATTGAACCTGTGTCTGGAGTACTAG

Coding sequence (CDS) from alignment at CM002461.1:297623..299458+

>rna3392 ID=rna3392|Name=rna3392|organism=Nannochloropsis gaditana|type=CDS|length=5280bp|location=Sequence derived from alignment at CM002461.1:297623..299458+ (Nannochloropsis gaditana)
ATGTACCCGCGATGGGCACATGGTGCctcctgggaggaagagggagcgag
ccctccccccttttctaATCCGATGACACCACTCCTCGCTTATAAATTGA
CACGACCACATGTCATTCACACAGGGCAAGAGCAGGGTGCGCAATTTATT
TTCTCATTGTGTACCTTGAGGGCAGTCTGTCGTCGGTCGCGGAGGCGTGG
ATTAAAAATGCGCTCCCAGCGAacgcgaagaggaggacgaaagggCCACG
CACACCAGCCCTTGTCAAAGACACCAAGACATGGTCGCTTCCACGAAGCC
ACGCGAAGAatagaaggaggtggaagcaACGCGGCATCTCTTGGTCTGCT
ATGCTCTTTGGTATTCGTCAGCTCGGTTCTGTGCCTCCTGTCTTTGCTTC
GTGCCGCTGATGCCGCACGATTCATTCGGCCTTTCGGTgaaccgcctccc
ccgccaccaccaatGGGGGCTCGGTACGGTCACGGTATTTTCGACCGCCG
GCATACCCCAGCGAAGGGCGGGCCCAGGAACagggccgaggagggaggcg
accgggagggagcgagtgGGGGAGGTATCGGTGGCAACGTGTTTTGGAAG
CAATGGCATTTCCCCGTCcgaacgagggggaggaacggggtgGACGATGA
GGACGCCCTGGGGTCCGCGGGGACGGGCGACTTCGATCCGCTCTTCGACG
GAAATGGGttagggggaagggaaggcgcaCGTGCAGAAGCCGCagcggca
gagagggagtTCGAGTCGTCTGACCGCCGGCCTTGGACGGATTTAATTCC
AAGGTTTCGGGTCAAGGTGGAGCCGTTGACCACGTTGAAGTTGCGGAAAC
GCTTTTACCCGTTCAAAACCGTGATCGAGCTGGGCGCGGACTACAACACA
CAGATTGGTGTGTGGCAGTTCAAATCCTCCTGGGAGGACCGGATCATTGG
AGGGCGACTGACTGTGAAAGGTCGCGAGCTCCAGTTTTCGAAGACCTGGC
TGGTTACTTTGGGGGACCAAGACGACATCGCCACGCGCTTGAAGTTCCGC
GCCGGTATTGACACGGGCACGTGGCGCTCCTACGCCCGCTTGGGATTTAG
GACTGAGAGAATACAACCTCTGAATTTGAAGGACGGAGTGACCCTCCGCc
ggcgccttcccctcgatGGCACGGAGGGCCACGCCAAGTTGGAAGTGCGG
GCAAATCTGTGTTTACCGGAGCCTGAGATAGAATATTCGACAGACAAGAA
ACGGCTCATTATGGGCACCGGCGACATCCTGCTGAGCATCGACGAATTGA
ACCTGTGTCTGGAGTACTAGATGTACCCGCGATGGGCACATGGTGCctcc
tgggaggaagagggagcgagccctccccccttttctaATCCGATGACACC
ACTCCTCGCTTATAAATTGACACGACCACATGTCATTCACACAGGGCAAG
AGCAGGGTGCGCAATTTATTTTCTCATTGTGTACCTTGAGGGCAGTCTGT
CGTCGGTCGCGGAGGCGTGGATTAAAAATGCGCTCCCAGCGAacgcgaag
aggaggacgaaagggCCACGCACACCAGCCCTTGTCAAAGACACCAAGAC
ATGGTCGCTTCCACGAAGCCACGCGAAGAatagaaggaggtggaagcaAC
GCGGCATCTCTTGGTCTGCTATGCTCTTTGGTATTCGTCAGCTCGGTTCT
GTGCCTCCTGTCTTTGCTTCGTGCCGCTGATGCCGCACGATTCATTCGGC
CTTTCGGTgaaccgcctcccccgccaccaccaatGGGGGCTCGGTACGGT
CACGGTATTTTCGACCGCCGGCATACCCCAGCGAAGGGCGGGCCCAGGAA
CagggccgaggagggaggcgaccgggagggagcgagtgGGGGAGGTATCG
GTGGCAACGTGTTTTGGAAGCAATGGCATTTCCCCGTCcgaacgaggggg
aggaacggggtgGACGATGAGGACGCCCTGGGGTCCGCGGGGACGGGCGA
CTTCGATCCGCTCTTCGACGGAAATGGGttagggggaagggaaggcgcaC
GTGCAGAAGCCGCagcggcagagagggagtTCGAGTCGTCTGACCGCCGG
CCTTGGACGGATTTAATTCCAAGGTTTCGGGTCAAGGTGGAGCCGTTGAC
CACGTTGAAGTTGCGGAAACGCTTTTACCCGTTCAAAACCGTGATCGAGC
TGGGCGCGGACTACAACACACAGATTGGTGTGTGGCAGTTCAAATCCTCC
TGGGAGGACCGGATCATTGGAGGGCGACTGACTGTGAAAGGTCGCGAGCT
CCAGTTTTCGAAGACCTGGCTGGTTACTTTGGGGGACCAAGACGACATCG
CCACGCGCTTGAAGTTCCGCGCCGGTATTGACACGGGCACGTGGCGCTCC
TACGCCCGCTTGGGATTTAGGACTGAGAGAATACAACCTCTGAATTTGAA
GGACGGAGTGACCCTCCGCcggcgccttcccctcgatGGCACGGAGGGCC
ACGCCAAGTTGGAAGTGCGGGCAAATCTGTGTTTACCGGAGCCTGAGATA
GAATATTCGACAGACAAGAAACGGCTCATTATGGGCACCGGCGACATCCT
GCTGAGCATCGACGAATTGAACCTGTGTCTGGAGTACTAGATGTACCCGC
GATGGGCACATGGTGCctcctgggaggaagagggagcgagccctcccccc
ttttctaATCCGATGACACCACTCCTCGCTTATAAATTGACACGACCACA
TGTCATTCACACAGGGCAAGAGCAGGGTGCGCAATTTATTTTCTCATTGT
GTACCTTGAGGGCAGTCTGTCGTCGGTCGCGGAGGCGTGGATTAAAAATG
CGCTCCCAGCGAacgcgaagaggaggacgaaagggCCACGCACACCAGCC
CTTGTCAAAGACACCAAGACATGGTCGCTTCCACGAAGCCACGCGAAGAa
tagaaggaggtggaagcaACGCGGCATCTCTTGGTCTGCTATGCTCTTTG
GTATTCGTCAGCTCGGTTCTGTGCCTCCTGTCTTTGCTTCGTGCCGCTGA
TGCCGCACGATTCATTCGGCCTTTCGGTgaaccgcctcccccgccaccac
caatGGGGGCTCGGTACGGTCACGGTATTTTCGACCGCCGGCATACCCCA
GCGAAGGGCGGGCCCAGGAACagggccgaggagggaggcgaccgggaggg
agcgagtgGGGGAGGTATCGGTGGCAACGTGTTTTGGAAGCAATGGCATT
TCCCCGTCcgaacgagggggaggaacggggtgGACGATGAGGACGCCCTG
GGGTCCGCGGGGACGGGCGACTTCGATCCGCTCTTCGACGGAAATGGGtt
agggggaagggaaggcgcaCGTGCAGAAGCCGCagcggcagagagggagt
TCGAGTCGTCTGACCGCCGGCCTTGGACGGATTTAATTCCAAGGTTTCGG
GTCAAGGTGGAGCCGTTGACCACGTTGAAGTTGCGGAAACGCTTTTACCC
GTTCAAAACCGTGATCGAGCTGGGCGCGGACTACAACACACAGATTGGTG
TGTGGCAGTTCAAATCCTCCTGGGAGGACCGGATCATTGGAGGGCGACTG
ACTGTGAAAGGTCGCGAGCTCCAGTTTTCGAAGACCTGGCTGGTTACTTT
GGGGGACCAAGACGACATCGCCACGCGCTTGAAGTTCCGCGCCGGTATTG
ACACGGGCACGTGGCGCTCCTACGCCCGCTTGGGATTTAGGACTGAGAGA
ATACAACCTCTGAATTTGAAGGACGGAGTGACCCTCCGCcggcgccttcc
cctcgatGGCACGGAGGGCCACGCCAAGTTGGAAGTGCGGGCAAATCTGT
GTTTACCGGAGCCTGAGATAGAATATTCGACAGACAAGAAACGGCTCATT
ATGGGCACCGGCGACATCCTGCTGAGCATCGACGAATTGAACCTGTGTCT
GGAGTACTAGATGTACCCGCGATGGGCACATGGTGCctcctgggaggaag
agggagcgagccctccccccttttctaATCCGATGACACCACTCCTCGCT
TATAAATTGACACGACCACATGTCATTCACACAGGGCAAGAGCAGGGTGC
GCAATTTATTTTCTCATTGTGTACCTTGAGGGCAGTCTGTCGTCGGTCGC
GGAGGCGTGGATTAAAAATGCGCTCCCAGCGAacgcgaagaggaggacga
aagggCCACGCACACCAGCCCTTGTCAAAGACACCAAGACATGGTCGCTT
CCACGAAGCCACGCGAAGAatagaaggaggtggaagcaACGCGGCATCTC
TTGGTCTGCTATGCTCTTTGGTATTCGTCAGCTCGGTTCTGTGCCTCCTG
TCTTTGCTTCGTGCCGCTGATGCCGCACGATTCATTCGGCCTTTCGGTga
accgcctcccccgccaccaccaatGGGGGCTCGGTACGGTCACGGTATTT
TCGACCGCCGGCATACCCCAGCGAAGGGCGGGCCCAGGAACagggccgag
gagggaggcgaccgggagggagcgagtgGGGGAGGTATCGGTGGCAACGT
GTTTTGGAAGCAATGGCATTTCCCCGTCcgaacgagggggaggaacgggg
tgGACGATGAGGACGCCCTGGGGTCCGCGGGGACGGGCGACTTCGATCCG
CTCTTCGACGGAAATGGGttagggggaagggaaggcgcaCGTGCAGAAGC
CGCagcggcagagagggagtTCGAGTCGTCTGACCGCCGGCCTTGGACGG
ATTTAATTCCAAGGTTTCGGGTCAAGGTGGAGCCGTTGACCACGTTGAAG
TTGCGGAAACGCTTTTACCCGTTCAAAACCGTGATCGAGCTGGGCGCGGA
CTACAACACACAGATTGGTGTGTGGCAGTTCAAATCCTCCTGGGAGGACC
GGATCATTGGAGGGCGACTGACTGTGAAAGGTCGCGAGCTCCAGTTTTCG
AAGACCTGGCTGGTTACTTTGGGGGACCAAGACGACATCGCCACGCGCTT
GAAGTTCCGCGCCGGTATTGACACGGGCACGTGGCGCTCCTACGCCCGCT
TGGGATTTAGGACTGAGAGAATACAACCTCTGAATTTGAAGGACGGAGTG
ACCCTCCGCcggcgccttcccctcgatGGCACGGAGGGCCACGCCAAGTT
GGAAGTGCGGGCAAATCTGTGTTTACCGGAGCCTGAGATAGAATATTCGA
CAGACAAGAAACGGCTCATTATGGGCACCGGCGACATCCTGCTGAGCATC
GACGAATTGAACCTGTGTCTGGAGTACTAG

Synonyms

Publications