EWM27279.1, cds3383 (CDS) Nannochloropsis gaditana

Overview
NameEWM27279.1
Unique Namecds3383
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002461.1:297623..298095 +
Alignment locationCM002461.1:298369..298798 +
Alignment locationCM002461.1:298910..299115 +
Alignment locationCM002461.1:299248..299458 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM27279.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100080g10.2843.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002461.1supercontigCM002461.1:297623..298095 +
CM002461.1supercontigCM002461.1:298369..298798 +
CM002461.1supercontigCM002461.1:298910..299115 +
CM002461.1supercontigCM002461.1:299248..299458 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
BLAST of EWM27279.1 vs. NCBI_GenBank
Match: gi|585109461|gb|EWM27279.1| (hypothetical protein Naga_100080g10 [Nannochloropsis gaditana])

HSP 1 Score: 890.952 bits (2301), Expect = 0.000e+0
Identity = 439/439 (100.00%), Postives = 439/439 (100.00%), Query Frame = 0
Query:    1 MYPRWAHGASWEEEGASPPPFSNPMTPLLAYKLTRPHVIHTGQEQGAQFIFSLCTLRAVCRRSRRRGLKMRSQRTRRGGRKGHAHQPLSKTPRHGRFHEATRRIEGGGSNAASLGLLCSLVFVSSVLCLLSLLRAADAARFIRPFGEPPPPPPPMGARYGHGIFDRRHTPAKGGPRNRAEEGGDREGASGGGIGGNVFWKQWHFPVRTRGRNGVDDEDALGSAGTGDFDPLFDGNGLGGREGARAEAAAAEREFESSDRRPWTDLIPRFRVKVEPLTTLKLRKRFYPFKTVIELGADYNTQIGVWQFKSSWEDRIIGGRLTVKGRELQFSKTWLVTLGDQDDIATRLKFRAGIDTGTWRSYARLGFRTERIQPLNLKDGVTLRRRLPLDGTEGHAKLEVRANLCLPEPEIEYSTDKKRLIMGTGDILLSIDELNLCLEY 439
            MYPRWAHGASWEEEGASPPPFSNPMTPLLAYKLTRPHVIHTGQEQGAQFIFSLCTLRAVCRRSRRRGLKMRSQRTRRGGRKGHAHQPLSKTPRHGRFHEATRRIEGGGSNAASLGLLCSLVFVSSVLCLLSLLRAADAARFIRPFGEPPPPPPPMGARYGHGIFDRRHTPAKGGPRNRAEEGGDREGASGGGIGGNVFWKQWHFPVRTRGRNGVDDEDALGSAGTGDFDPLFDGNGLGGREGARAEAAAAEREFESSDRRPWTDLIPRFRVKVEPLTTLKLRKRFYPFKTVIELGADYNTQIGVWQFKSSWEDRIIGGRLTVKGRELQFSKTWLVTLGDQDDIATRLKFRAGIDTGTWRSYARLGFRTERIQPLNLKDGVTLRRRLPLDGTEGHAKLEVRANLCLPEPEIEYSTDKKRLIMGTGDILLSIDELNLCLEY
Sbjct:    1 MYPRWAHGASWEEEGASPPPFSNPMTPLLAYKLTRPHVIHTGQEQGAQFIFSLCTLRAVCRRSRRRGLKMRSQRTRRGGRKGHAHQPLSKTPRHGRFHEATRRIEGGGSNAASLGLLCSLVFVSSVLCLLSLLRAADAARFIRPFGEPPPPPPPMGARYGHGIFDRRHTPAKGGPRNRAEEGGDREGASGGGIGGNVFWKQWHFPVRTRGRNGVDDEDALGSAGTGDFDPLFDGNGLGGREGARAEAAAAEREFESSDRRPWTDLIPRFRVKVEPLTTLKLRKRFYPFKTVIELGADYNTQIGVWQFKSSWEDRIIGGRLTVKGRELQFSKTWLVTLGDQDDIATRLKFRAGIDTGTWRSYARLGFRTERIQPLNLKDGVTLRRRLPLDGTEGHAKLEVRANLCLPEPEIEYSTDKKRLIMGTGDILLSIDELNLCLEY 439          
BLAST of EWM27279.1 vs. NCBI_GenBank
Match: gi|219126093|ref|XP_002183299.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217405055|gb|EEC44999.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 241.121 bits (614), Expect = 1.358e-72
Identity = 106/173 (61.27%), Postives = 143/173 (82.66%), Query Frame = 0
Query:  267 PRFRVKVEPLTTLKLRKRFYPFKTVIELGADYNTQIGVWQFKSSWEDRIIGGRLTVKGRELQFSKTWLVTLGDQDDIATRLKFRAGIDTGTWRSYARLGFRTERIQPLNLKDGVTLRRRLPLDGTEGHAKLEVRANLCLPEPEIEYSTDKKRLIMGTGDILLSIDELNLCLEY 439
            P+ + +VEP TTLK+RK F P KTV++LGAD+NTQ+GVWQF+SSWED IIGG+LT+ GRELQ SK+W +++G  +D+ TRL+FRA +D  TW++YAR+GFRTER+ P+N+ +G TL ++LPLDG  GH KLEV+AN  LPEPEIEYST+ +R ++G GDI ++I+ELNL L+Y
Sbjct:  175 PKIQCRVEPTTTLKIRKTFRPLKTVVQLGADFNTQLGVWQFRSSWEDAIIGGKLTLAGRELQLSKSWQLSVGAVEDLVTRLRFRAAVDLQTWKAYARVGFRTERLSPINVMEGFTLLKQLPLDGNHGHVKLEVKANFALPEPEIEYSTETQRSLIGMGDIEVNIEELNLVLDY 347          
BLAST of EWM27279.1 vs. NCBI_GenBank
Match: gi|298706541|emb|CBJ29511.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 238.039 bits (606), Expect = 2.524e-72
Identity = 107/179 (59.78%), Postives = 139/179 (77.65%), Query Frame = 0
Query:  264 DLIPRFRVKVEPLTTLKLRKRFYPFKTVIELGADYNTQIGVWQFKSSWEDRIIGGRLTVKGRELQFSKTWLVTLGDQDDIATRLKFRAGIDTGTWRSYARLGFRTERIQPLNLKDGVTLRRRLPLDGTEGHAKLEVRANLCLPEPEIEYSTD---KKRLIMGTGDILLSIDELNLCLEY 439
            DL P  RV ++P T+LKLRKR YP KTV+ LGADYNTQIGVWQF+S+WED IIGGR+++ GRE+  +K+WL+ + D +D+ATRLKFRA I+T  W +YA+ GFRTERI PLN+KDG  L ++ PLDG  GHAKLEV + L LPEPE+++ST+    K +++G GD+ L I+E NL LEY
Sbjct:   94 DLFPNVRVSMDPTTSLKLRKRIYPLKTVLTLGADYNTQIGVWQFRSTWEDSIIGGRISIAGREVMLTKSWLLKVMDSEDVATRLKFRAAINTRDWTAYAKFGFRTERISPLNIKDGFQLAKKFPLDGNNGHAKLEVVSKLALPEPELQFSTNGDTSKGVVIGMGDVNLGIEEFNLLLEY 272          
BLAST of EWM27279.1 vs. NCBI_GenBank
Match: gi|1210523390|dbj|GAX18027.1| (hypothetical protein FisN_18Hh242 [Fistulifera solaris])

HSP 1 Score: 229.95 bits (585), Expect = 8.977e-69
Identity = 103/184 (55.98%), Postives = 141/184 (76.63%), Query Frame = 0
Query:  256 SSDRRPWTDLIPRFRVKVEPLTTLKLRKRFYPFKTVIELGADYNTQIGVWQFKSSWEDRIIGGRLTVKGRELQFSKTWLVTLGDQDDIATRLKFRAGIDTGTWRSYARLGFRTERIQPLNLKDGVTLRRRLPLDGTEGHAKLEVRANLCLPEPEIEYSTDKKRLIMGTGDILLSIDELNLCLEY 439
            S++  P     P+   +VEP TTLKLRK F P  T+I LGA++NTQ+ VWQFKS WED IIGG+LT+ GRELQ +K+W +++G  +D+ TRL+FRA +D  TW++YAR+GFRTER+ P+N+ +G T ++ +PLDG  GH KL+V+AN  LPEPEIEYST+ +R ++G GDI +SI+ELNL L+Y
Sbjct:  128 SANISPSVKSWPKIVCRVEPTTTLKLRKTFRPLGTIIRLGANFNTQLQVWQFKSDWEDAIIGGKLTLAGRELQLTKSWQLSVGAVEDLVTRLRFRAAVDLSTWKAYARVGFRTERLSPINIMEGFTFQKEVPLDGPSGHVKLQVKANFALPEPEIEYSTETQRSLIGMGDIQVSIEELNLLLDY 311          
BLAST of EWM27279.1 vs. NCBI_GenBank
Match: gi|1210523628|dbj|GAX17588.1| (hypothetical protein FisN_18Lh242 [Fistulifera solaris])

HSP 1 Score: 224.557 bits (571), Expect = 9.908e-68
Identity = 101/173 (58.38%), Postives = 137/173 (79.19%), Query Frame = 0
Query:  267 PRFRVKVEPLTTLKLRKRFYPFKTVIELGADYNTQIGVWQFKSSWEDRIIGGRLTVKGRELQFSKTWLVTLGDQDDIATRLKFRAGIDTGTWRSYARLGFRTERIQPLNLKDGVTLRRRLPLDGTEGHAKLEVRANLCLPEPEIEYSTDKKRLIMGTGDILLSIDELNLCLEY 439
            P+   +VEP TTLKLRK F P  T+I LGA++NTQ+ VWQFKS WED IIGG+LT+ GRELQ +K+W +++G  +D+ TRL+FRA +D  TW++YAR+GFRTER+ P+N+ +G T ++ +PLDG  GH KL+V+AN  LPEPEIEYST+ +R ++G GDI +SI+ELNL L+Y
Sbjct:   60 PKIVCRVEPTTTLKLRKTFRPLGTIIRLGANFNTQLQVWQFKSDWED-IIGGKLTLAGRELQLTKSWQLSVGAVEDLVTRLRFRAAVDLSTWKAYARVGFRTERLSPINIMEGFTFQKEVPLDGPSGHVKLQVKANFALPEPEIEYSTETQRSLIGMGDIQVSIEELNLLLDY 231          
BLAST of EWM27279.1 vs. NCBI_GenBank
Match: gi|1072235216|gb|OEU19945.1| (hypothetical protein FRACYDRAFT_236006 [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 217.624 bits (553), Expect = 4.319e-63
Identity = 101/180 (56.11%), Postives = 140/180 (77.78%), Query Frame = 0
Query:  261 PWTDLIPRFRVKVEPLTTLKLRKRFYPFKTVIELGADYNTQIGVWQFKSSWEDRIIGGRLTVKG-RELQFSKTWLVTLGDQDDIATRLKFRAGIDTGTWRSYARLGFRTERIQPLNLKDGVTLRRRLPLDGTEGHAKLEVRANLCLPEPEIEYSTDKKRLIMGTGDILLSIDELNLCLEY 439
            P    +P+   ++EP TTLK+RK F P KT+I LGADYNTQ GVWQFKSSWED IIG +LT+ G RELQ +K+W +++G  +D+ TRL+FRA I+  T++   R+GFRTER+ P+++ +G ++ +RLPLDG+ G+ KLEV+AN+ LPEPEIEYST+ +R ++G GDI +SIDE+NL L+Y
Sbjct:  200 PKIQRLPKIICRIEPSTTLKIRKTFRPLKTIIRLGADYNTQQGVWQFKSSWEDAIIGSKLTLTGNRELQLTKSWQLSVGAVEDLVTRLRFRAAINLQTFQGTVRVGFRTERLTPIDVVEGFSILKRLPLDGSGGNLKLEVKANVALPEPEIEYSTEAQRSLIGMGDIEVSIDEMNLLLDY 379          
BLAST of EWM27279.1 vs. NCBI_GenBank
Match: gi|873231051|emb|CEM09184.1| (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 166.777 bits (421), Expect = 1.091e-44
Identity = 75/179 (41.90%), Postives = 117/179 (65.36%), Query Frame = 0
Query:  266 IPRFRVKVEPLTTLKLRKRFYPFKTVIELGADYNTQIGVWQFKSSWEDRIIGGRLTVKGRELQFSKTWLVTLG--DQDDIATRLKFRAGIDTGTWRSYARLGFRTERIQPLNLKDGVTLRRRLPLDGTEGHAKLEVRANLCLPEPEIEYSTDKK---RLIMGTGDILLSIDELNLCLEY 439
            +PR ++K EP T LK+RK  +P KT + +GADY+ Q   W+  SSW+D +IGG +T+ GRE   +K W +     DQ  +  +L+  AG++  T R +A+   R ER+ P+   DG+ + +R+PLDG  G+AKLEV+  +  PEP++EYSTD++    ++ G GD+ ++I++LNLC EY
Sbjct:  110 LPRIKIKTEPKTFLKIRKTLFPLKTRLTVGADYSLQDRQWKLVSSWQDNVIGGTITLNGREFSIAKDWFLPFSEIDQHQVGAKLRVHAGLNMDTGRLFAKFRMRAERLAPIAFGDGIRIDQRVPLDGRNGNAKLEVKGRVSFPEPQVEYSTDRQGNVGIMTGMGDVEVAIEQLNLCFEY 288          
BLAST of EWM27279.1 vs. NCBI_GenBank
Match: gi|545706842|ref|XP_005705737.1| (hypothetical protein isoform 1 [Galdieria sulphuraria] >gi|452822195|gb|EME29217.1| hypothetical protein isoform 1 [Galdieria sulphuraria])

HSP 1 Score: 102.064 bits (253), Expect = 5.990e-22
Identity = 68/173 (39.31%), Postives = 91/173 (52.60%), Query Frame = 0
Query:  267 PRFRVKVEPLTTLKLRKRFYPFK-TVIELGADYNTQIGVWQFKSSWEDRIIGGRLTVKGRELQFSKTWLVTLGDQDDIATRLKFRAGIDTGTWRSYARLGFRTERIQPLNLKDGVTLRRRLPLDGTEGHAKLEVRANLCLPEPEIEYSTDKKRLIMGTGDILLSIDELNLCLE 438
            P+   K  P T LKLRK FYP   T + LGAD + Q G W F ++W+DRIIGGRL VK  ++   K +LV   +  +I     ++ G     +R     G +T    P     G+ LRR++PLD      KL+V A L  PE   E +T    +  GTGD +L I +LNL LE
Sbjct:    5 PKLVWKCNPSTKLKLRKHFYPLALTKLTLGADLDLQHGFWTFHTAWKDRIIGGRLAVKDNQVSLVKEFLVDQKNTFNIHISYDWKIGQTLFGFRFSPYRGIQTNTHPP-----GMALRRKIPLD---YRTKLDVFAWLQFPEATCE-ATSTGAVSFGTGDFILDIQQLNLYLE 168          
BLAST of EWM27279.1 vs. NCBI_GenBank
Match: gi|223999949|ref|XP_002289647.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220974855|gb|EED93184.1| predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 106.301 bits (264), Expect = 8.387e-22
Identity = 74/223 (33.18%), Postives = 108/223 (48.43%), Query Frame = 0
Query:  260 RPWTDL-----IPRFRVKVEPLTTLKLRKRFYPFK--TVIELGADYNTQI----GVWQFKSSWEDRIIGGRLTVKGRE-------LQFSKTWLVTLGDQDDIATRLKFRAGIDTGTWRSYARLGFRTERIQPL----------------NLKDGVTLRRRLPLDGTEGHAKLEVRANLCLPEPEIEYSTDKKRLIMG---------TGDILLSIDELNLCLEY 439
            R WT       IP   V  +P+T LKLRK +      ++I +GAD+ T      GVW+ ++  ED+ IGGR  +KG+        L++SK+WL        +ATR    A  D  T R  AR GFR+E +  +                  +   T+   LPLDG +G+ KLEV+ ++ LPEPEI    D  R+  G          GD+ + I+ELNL +++
Sbjct:  144 RQWTHTKTGIRIPNVNVYFDPITILKLRKSWNGIIPGSIIRVGADFETHHRLVGGVWRLRACLEDKFIGGRFIIKGKRNGDEGVLLEYSKSWL--FAGAGSLATRFNLNAQYDIKTNRCSARFGFRSENMGTVGSFVSSRGVFGGMGGGGGRQSFTIVPILPLDGRDGNVKLEVKTSIELPEPEIVVGMDLDRVSAGGSSSVAMGVGGDVDMEIEELNLIVDF 364          
BLAST of EWM27279.1 vs. NCBI_GenBank
Match: gi|397641176|gb|EJK74514.1| (hypothetical protein THAOC_03801 [Thalassiosira oceanica])

HSP 1 Score: 85.1149 bits (209), Expect = 8.732e-15
Identity = 65/194 (33.51%), Postives = 95/194 (48.97%), Query Frame = 0
Query:  266 IPRFRVKVEPLTTLKLRKRFYPFK--TVIELGADYNTQI---GVWQFKSSWEDRIIGGRLTVKGRE----------LQFSKTWLVTLGDQDDIATRLKFRAGIDTGTWRSYARLGFRTERIQPLNL----KDGVTLRRRLPLDGTEGHAKLEVRANLCLPEPE----IEYSTDKK---RLIMGTGDILLSIDEL 433
            IPR  V  +P+TTLKLRK +       +I +GAD  T     G W+ +   ED+IIGGR ++  R           + +SK+W +         TRL   A  D  T R   R+GF+ E +    L    + GV++   LPLD  +   +LEV++N+ LP PE    +  S D      L +G GD+ + I+EL
Sbjct:  109 IPRISVGFDPITTLKLRKSWENILPWAIIRVGADLETHRLGRGAWKLRGCLEDKIIGGRFSLNERYNRDTDQRALLVGYSKSWFIANDYGAGSGTRLNISADYDVKTRRGGIRMGFQQESVWQSYLLPGRRRGVSIVPTLPLD-VDRRVQLEVKSNIELPAPEFGLGVSMSLDSDAPVELDIGVGDVNVDIEEL 301          
The following BLAST results are available for this feature:
BLAST of EWM27279.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585109461|gb|EWM27279.1|0.000e+0100.00hypothetical protein Naga_100080g10 [Nannochlorops... [more]
gi|219126093|ref|XP_002183299.1|1.358e-7261.27predicted protein [Phaeodactylum tricornutum CCAP ... [more]
gi|298706541|emb|CBJ29511.1|2.524e-7259.78conserved unknown protein [Ectocarpus siliculosus][more]
gi|1210523390|dbj|GAX18027.1|8.977e-6955.98hypothetical protein FisN_18Hh242 [Fistulifera sol... [more]
gi|1210523628|dbj|GAX17588.1|9.908e-6858.38hypothetical protein FisN_18Lh242 [Fistulifera sol... [more]
gi|1072235216|gb|OEU19945.1|4.319e-6356.11hypothetical protein FRACYDRAFT_236006 [Fragilario... [more]
gi|873231051|emb|CEM09184.1|1.091e-4441.90unnamed protein product [Vitrella brassicaformis C... [more]
gi|545706842|ref|XP_005705737.1|5.990e-2239.31hypothetical protein isoform 1 [Galdieria sulphura... [more]
gi|223999949|ref|XP_002289647.1|8.387e-2233.18predicted protein [Thalassiosira pseudonana CCMP13... [more]
gi|397641176|gb|EJK74514.1|8.732e-1533.51hypothetical protein THAOC_03801 [Thalassiosira oc... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna3392rna3392Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications